Array 1 12263-17968 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFHK01000012.1 Legionella pneumophila strain RC01 NODE_12_length_127629_cov_19.7442_ID_3740, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 12263 32 100.0 34 ................................ AGAGATGACAAGATATTGTCCGCAACAGCTACAT 12329 32 100.0 34 ................................ ATTAAAAAATGGTGAGTTTGAGGATTTAAAAGAT 12395 32 100.0 35 ................................ TTTCATGATCATTCCCTGATTCTAACCATTCTCCA 12462 32 100.0 35 ................................ TGCATTAATAGCTTCTGCTGGGTTCCACCCACTAT 12529 32 100.0 34 ................................ ATTACATAAATTATCACGAGTATCAGGCGATACA 12595 32 100.0 34 ................................ TATCAATATTAAGCATCTTGGCATTCTTCAAATC 12661 32 100.0 35 ................................ TGAGAATCCTAAATTACAAAAATTAAAAGGCTCGT 12728 32 100.0 35 ................................ ATCCATGCGCCCTCTTTGGTAGTCGCTAATGCTGC 12795 32 100.0 34 ................................ GCCAAGCGGAAGTCGAACGTGACGAACCGCAAGA 12861 32 100.0 34 ................................ TGTTTTTTTATTGTAAACGTGAGTTATATTAGTG 12927 32 100.0 34 ................................ CGTTTATTTCGTCTAATTCTTCTTTGTTGAACCC 12993 32 100.0 35 ................................ GCAACTAATTCATAGAATGCAGTACCAAAATAACT 13060 32 100.0 35 ................................ TCTATGATGGCATCTTTGATAGCCATACTCAAGAG 13127 32 100.0 34 ................................ TGCTGTGTATAGGAGAGAACCTACACTCATAATT 13193 32 100.0 34 ................................ TTTTATTTTGAGTGTCTGGTAGGTATATTGGTAT 13259 32 100.0 34 ................................ TGCTGTGTATAGGAGAGAACCTACACTCATAATT 13325 32 100.0 33 ................................ TCATTTACATTTCTTATTTTTTGTTTAACTTGT 13390 32 100.0 35 ................................ AACAAAGCCCTATAAATCTTGATACACACTTAGGA 13457 32 100.0 36 ................................ TTATTAAAACATACAGTAATGAAGGCGATACAGTGT 13525 32 100.0 36 ................................ ATTATTTTAAGGGTGCAAGACTTAGGAGGTGTGGTA 13593 32 100.0 34 ................................ GGGCTATATACGTCCTGTTAAACACCTACCGCAC 13659 32 100.0 34 ................................ ATGCTATAACGTATGATAAAATAAAAGACGAAAT 13725 32 100.0 35 ................................ TAGCCGCTAATGCCTTAATTCCAGCGCCGTATTGC 13792 32 100.0 35 ................................ ATGATGATATGAGTAGGGTTAAGGGTTTGGTCGAT 13859 32 100.0 36 ................................ AATTTTGACATTGATTTATGTGCTACTAAAGAAAAT 13927 32 100.0 34 ................................ TCAAAAGACCGAAATACCATCTCGAATGAGATTT 13993 32 100.0 35 ................................ AATAAATTAAAAAAGCTTACAGGCGGTGTTGGCAC 14060 32 100.0 35 ................................ CGGTGTGATCGCCGTCAACCGCTCCCGCCGAGGTT 14127 32 100.0 36 ................................ CAGTAAAATGCAATAAATATTGTATTTATTTTACAC 14195 32 100.0 35 ................................ ATACAAACGGGATAGGTAATAATCAAGCTAATAGA 14262 32 100.0 34 ................................ GCTAATATCAATTGTATGTTCTTCTTTTAGACCT 14328 32 100.0 34 ................................ AAATCTAATTGGGTAGTTTCGCGCAACGGGCCGT 14394 32 100.0 34 ................................ AAATTACTACAAACCAGAATACTAGTAAAAGGTT 14460 32 100.0 34 ................................ TGCAAGTCCTGCTATCAATTGATCGTCTGTTAAT 14526 32 100.0 34 ................................ CATCCGTTCATATCTTCGGAAGCAATAACCCAAA 14592 32 100.0 36 ................................ AATCGCCTCCATGCCGTATTTTCTGGCCTGTTCCGG 14660 32 100.0 36 ................................ GTTAATATGAAAGGCCGAATAATTCATCGGCACGCC 14728 32 100.0 35 ................................ GGGATTAGTTATCCTGCTATTCGAGACATTTTTTA 14795 32 100.0 35 ................................ CATCACGAATGACTTGCTCTACTTGATTGCCTTTT 14862 32 100.0 35 ................................ ATTTCATAGTTCCTTAATCTGTAAAAAGCTCGCCA 14929 32 100.0 34 ................................ CCTCCTCATCTGCTTTTTGAGTTCTTAAATCCAT 14995 32 100.0 35 ................................ CATCACATTGACCCAACACAAAAAGAATTCGCAAT 15062 32 100.0 35 ................................ ATCAAATCATAACCTTGTTTTATGCAATATTCCTT 15129 32 100.0 35 ................................ AATCTTAAGAGGGCATTCGCCTGAGCACGGAATGA 15196 32 100.0 34 ................................ TGAACGCAAAATGATGGCAAGAGAAATCGAAGAC 15262 32 100.0 34 ................................ AAATTTAGTTACAAGACTCGATATGATGAGGGAT 15328 32 100.0 36 ................................ GACTATTGTTTGTCATCATCCGGCTCGCCGCAAAAA 15396 32 100.0 34 ................................ ACATTAAACGCCTTCGCAAAGAATTGGCCGAAAG 15462 32 100.0 35 ................................ GAACTTACGAATCTTTGAACTGGAAATGCCAACGC 15529 32 100.0 34 ................................ AATGACAGTATGGGATGTGAAATCGGTTATCAAT 15595 32 100.0 36 ................................ ACGAGGACGTTTACTTTAGCTTGCTGGTTATGACAG 15663 32 100.0 36 ................................ TTTTGCGAGAAAAATTTAATAAATGCCAGTTGACAC 15731 32 100.0 35 ................................ AATAAAATAAAATCTTTCTGCTCATCACTAAGCCT 15798 32 100.0 34 ................................ CTGCCGTAACTCTTAACAGCAATATCTCTCAAAG 15864 32 100.0 35 ................................ ATTTTAATCCTTGGTACTAAGTAAGGGGATTTAAA 15931 32 100.0 34 ................................ TAATAATCAATTCCTTTTTGATTAATAAAATTAG 15997 32 100.0 33 ................................ TGCCAGACCGTTAAGCTGCCAATAAACTCCTAG 16062 32 100.0 35 ................................ TGTAGTTGGGCTATCTTCTGCGACTAAAGTCCAAA 16129 32 100.0 36 ................................ ACGGATGCTGAGGAAAAATACAAATTGTTTTCGCAA 16197 32 100.0 35 ................................ CGTTGATATTATCAAAGGGTAAGTTTGCAAGGATG 16264 32 100.0 35 ................................ TCCAAAGTCTTTGACTTTCATAGGTCCGGCTTGGA 16331 32 100.0 35 ................................ AGATAAAACTTATCAAAATTGGCGCAAGAAATACC 16398 32 100.0 35 ................................ AGATAAAACCTATCAAAATTGGCGCAAGAAATATC 16465 32 100.0 35 ................................ TATCTACTATTTGCGACCATTCAGCAACACTAATT 16532 32 100.0 35 ................................ CACAAGCACAAATTAAATCTATCTTGTTGCAAAAT 16599 32 100.0 36 ................................ TTTTCTGTATCTGCTATATATTCCTCGGCGACTGCG 16667 32 100.0 34 ................................ CAAGCTTTATAGCCGTAGAGACAAGATACTTCAA 16733 32 100.0 36 ................................ AATCCTAATGACAATGAAGTCTTTATTCCAGATTTA 16801 32 100.0 34 ................................ ATACCGACACATTCATAACATTTTGCAGTGATTG 16867 32 100.0 35 ................................ CTCGACAATGTCGCTGGGAATTACTCGAATAATAC 16934 32 100.0 35 ................................ TTATTTGTTCAAACACTTCATCGTTTTGTTCCTCA 17001 32 100.0 35 ................................ AACTAAAGACCCAGCAGGAAAAACCTGTGCTGTTG 17068 32 100.0 34 ................................ AACACAGAGAATAGAACAGAAATCGACATGGATA 17134 32 100.0 37 ................................ GTCCCCGGGTCTACTACATTTTGTTGATATGTTTCTA 17203 32 96.9 38 .......................A........ TGCTTCCTGCAACGGTTGCAGACAAGCGAACATAACGC 17273 32 100.0 34 ................................ AGATGTTCGTCCGCCGCTAGGCAAGGCTCAATCG 17339 32 100.0 35 ................................ GTTTTAACCGTGGTTGATATTAAGTGCGTCTTTGA 17406 32 100.0 35 ................................ AATTGAATTAGAGCCGAATCCTACAGGGAATCCTG 17473 32 100.0 34 ................................ ATAATATCTAAAGCTTTACTAAAACCTTCGGCAA 17539 32 100.0 34 ................................ ATTACAATCTTACAAGGCTAGTGTTCGCAGGGCG 17605 32 100.0 34 ................................ ATATTGTTGTTACAGAGGGTGAATTCGATGCAGC 17671 32 100.0 34 ................................ ACATGAACAACCCTACTATTCCCACTAACCTAAC 17737 32 100.0 35 ................................ TAACCCAAAACCATTCATTGAGAAAGCTTGGGAAG 17804 32 100.0 35 ................................ TTTATGTATGGGGCGATATTATCTTAAGTAATGGT 17871 32 100.0 34 ................................ CAAATACACTTCTTTAATTCTTCTGTGCGTCCTG 17937 32 90.6 0 ...................T.C........T. | ========== ====== ====== ====== ================================ ====================================== ================== 86 32 99.9 35 GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Left flank : AATTTTATACTCCTTATTTAGTGAAGTAATTATGTTTGTAGTAATAACTTATGATGTTAATGTAACAACTTCTGGTGGGCAGAAACGTTTACGGAATATTGCAAAAACATGTCTTGATTATGGTTTTAGAGTGCAAAACTCTGTATTTGAATGCGAAGTTGAACCTGATCGGTTCGTTGCGTTAAAAAATACACTTTTAGAGTTATTTGATCCTGATGCTGATAGCTTACGATTTTATTTTTTAGGCAAAAAAGGGAAGGATAAAATCGAACATTTTGGAGCTAATAAGGTCATCGACCCCTTGAGAGATCCACTGATACTGTAATTCGCTAACTTGAAGTTCTCATATTTTTACCGGTCAATTATCGGATTATAACCACTTGATATTTATATTTTTTTTTATGTGTGCTTATCAAGCTAATCAATAAATATAATTTTTTATTATTATTAGCGATATTTAGCATTTTTTTCGATATATTTCAATATGCTATAATCATACT # Right flank : CACGGGTAGCATGAGTTTTTTAAGTGAACAAAAGCGTCGCGTTTAGCAAAGATAGTATGAATAAATTTTAATTAAAATGAACTTGATGTGAATTGTTACAAACATTTCATATCGATTTTAGGTATATTTAGCCAGAAGCTCTTTGTCTTTATCTTTGACTTTGATATCTTAAAGAAGAAGTTCCAGATTTTTTACAAGGATGTGAATATGTCTGACTTACAACAATTGCCTAAGACTATCCTGAGATTTTCCTGGCATTTTATAAAAAAAAGTCCCTGGCTTTATGCTTTATTTTTCATAGCACCAGTGGTGATGGTGCTTGAAACGAATGTGATTCCCTATGCTTTAAAAATGATTATTGATGGGATAACAAACCATAAAGGGGGAAAAGAAAGCATATTTCAAGACATCGCACCGGCTTTGTATTTGGGTGGAGTTGCCTGGTTTGGTGTGATTCTGGTGTTGCGCTTGCATAATTGGTGGCAAGCCTACCTTGTTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //