Array 1 134359-137745 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSSP01000001.1 Rhodocyclus tenuis strain Pfennig 2761 DSM109_NODE_1_length_367306_cov_394.453, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 134359 28 100.0 32 ............................ ACAACGGTGAACGGATCGACTTCGATCAGTTC 134419 28 100.0 32 ............................ TTGAGTGTAATACAGGTCGAGTGCCTTATCGG 134479 28 100.0 32 ............................ ACGCCGCTGATGACAGCGGCAACAGTGACAGC 134539 28 100.0 32 ............................ GCGTCGCCGGCGCGGACCGCAGCGAAGCGAGG 134599 28 100.0 32 ............................ GAGCAGAGAAGCGACTTGCTGTTGGGGTAAAA 134659 28 100.0 32 ............................ ACTTCACGGACTTGTCATAGGTGATTTCCATT 134719 28 100.0 32 ............................ TCGTTCTGCGCCGAGAATCCGAATTCTCCGAT 134779 28 100.0 32 ............................ GAATGGCAAGGGGAGAACGCTCTACATAGGTC 134839 28 100.0 32 ............................ GTCGCGCGCGTACCAGCCTTCTTCGACGGCCA 134899 28 100.0 32 ............................ GCTTGATATCTACAGGTTGATTCGGCTTTCAC 134959 28 100.0 32 ............................ AGTTGCTGTTTGTCATGCACGAAATTGAAGGC 135019 28 100.0 32 ............................ CATCGCTGCCCTACTCTTCCTGCTGATCTACT 135079 28 100.0 32 ............................ GATCAGGATCAGCTCGTCACGACCAACAGAAA 135139 28 100.0 32 ............................ ATTCCCATCAGCAGGTCGGGCGCGTAGATCGA 135199 28 100.0 32 ............................ TGTAGCGTTTTTCGTTCTCGGTGCGCCCGGCT 135259 28 100.0 32 ............................ TTGCGGTATTCCTGATGGGTAAAGCGCGCGTC 135319 28 100.0 32 ............................ GCGCGCCGGCAGGAGGTGATCGACAAGGCCGT 135379 28 100.0 32 ............................ CTCAAGCATGACGACAACGGAACCCTGACGCT 135439 28 100.0 32 ............................ AGCGCGCGGCGGAGTTCTTCAGGTCCCTGGTG 135499 28 100.0 32 ............................ TCACCGCCTTCATTGCCGACGCAGACCTTTTC 135559 28 100.0 32 ............................ CTGAAATCCTCACCCGGTCCCCTTCGGGGCTG 135619 28 100.0 32 ............................ ATCGGGAGCTTTTGCCCGATCCGACGAACCAT 135679 28 100.0 32 ............................ ACGTGCAGATGTTCGCTCGAAGCGAACTCTCC 135739 28 100.0 32 ............................ GATTTGACCGGGCGTTTCTGCGACCGCCGCTG 135799 28 100.0 32 ............................ GTGGCGCGTGGTCTGCACGCTCGTCGAGAAGA 135859 28 100.0 32 ............................ TCGGCGAGCTTGCCCGCCAGATCGTCGATGTC 135919 28 100.0 32 ............................ TTTTGCCAGAAGGCGAAGTCAAGGAACGTGTT 135979 28 100.0 32 ............................ ATGCGCAGGAAGCGGCTCTGATCCCACACGGG 136039 28 100.0 32 ............................ ATCCGCGAAGGAAAGTCACGGCCAGCGGCTAC 136099 28 100.0 32 ............................ GAGATGATGGCGAAGCGCCATGCCGAGCTGCT 136159 28 100.0 32 ............................ TGCATGTGAATCACGCAGGAAGAAGTTAGCAG 136219 28 100.0 32 ............................ AGTTGGAGGCGCTGGCAACGTCGAGGCGGGCG 136279 28 100.0 32 ............................ GATGAGCAACACATCGCCAGAGACGACGGCGA 136339 28 100.0 32 ............................ AGGACGGCGCCGCGAAGACGACGCCGACCACA 136399 28 100.0 32 ............................ TCGGCCGCGCCGCGCTTGCGCTTGCCGAACAG 136459 28 100.0 32 ............................ TACCTGACAGGTAAGGCCCAGGGACAGATTCT 136519 28 100.0 32 ............................ CCGGTCGGCCGCGCGGCCGTTGTTGTAGCCGC 136579 28 100.0 32 ............................ GCGCGCGGCGGCCCAGCCGCGCAGCTGTTGTT 136639 28 100.0 32 ............................ TTGCGCAGCGGCGGCGTCTGCTGCGTCGGCCG 136699 28 100.0 32 ............................ GATTCTGCGGGCGTCTTCTTCTGGGTCGCCTT 136759 28 100.0 32 ............................ ACTGACACGCTGCCGGCGCCGGCCATGAATCG 136819 28 100.0 32 ............................ TTGATGTAGCCGGCCGGCGGCGTGATCGTCGG 136879 28 100.0 32 ............................ ATTATCGCAAGCGGTTGTTTTCGCTTGGGCGT 136939 28 100.0 32 ............................ CTGGTCGAAGACGGAAAACGGAATCGCGGCCA 136999 28 100.0 32 ............................ TCGTCGCCGATCTGGGCTGATGCGTCCCGGTC 137059 28 100.0 32 ............................ TCCTCGCAGACGATCTCCCAGCGATAGCTGGC 137119 28 100.0 32 ............................ ACGCCGCCAGCGAGCGCAGCGTGTCGGTGGCC 137179 28 100.0 32 ............................ TCCTTGGCCTCGCCGAAAAACTCGCCGAAGCT 137239 28 96.4 32 .............T.............. AAGCGCGAATGGCCGCGTCTGCAGCGTCTGGT 137299 28 100.0 32 ............................ ATCTGCGCAGCCTTCAGCGCCTTGCCGTATCC 137359 28 100.0 32 ............................ CGACTCGTACCGGCTGCCGCCAGACTGCGTGA 137419 28 100.0 32 ............................ TTTCCGGCTCGTCTGGATCAAAGTTTTCGCTC 137479 28 96.4 32 ..............G............. CATGCGTCGAGGATGGCTTGTTTCTTGGCGCT 137539 28 100.0 32 ............................ AGCTACCGCAAGGCATGCATGCGGATGTGGCG 137599 28 100.0 33 ............................ TTCGGCGATGCCACGCAGCTTGGCCAGCTCGGC 137660 28 100.0 32 ............................ ACTGCGGAGTTGAAGGTTTGCGCTCGTCTTCT 137720 26 82.1 0 .............T.-..-T......G. | ========== ====== ====== ====== ============================ ================================= ================== 57 28 99.6 32 GTTTGCCGCCGTGCAGGCGGTTGAGAAG # Left flank : ATGGGCGCGCGCCCTCTACGCCAGCCTCTCCGCCGGCCACGGCCTCAACTTCACCCGCCAGGAGGGCGCCGGCGCCAAGGGCAGCAAAGAAGAGCGGGTGAATTCCTTCCTCGATCATGGCAATTACATCGCCTATGGCCTCGCCGCCGTCGCCCTCAACGGTCTTGGCATCAGCTACGCTTTTCCCCTGCTGCATGGCAAAACCCGGCGTGGCGCACTGGTTTTCGACATCGCCGACCTGATCAAGGACGCCTATGTGATGCCTCTGGCCTTCACGTGCGGCGCCAACCCCCGCGTCAAGGACAACGCCTTCCGCGCCCTGCTCATCGAGACCCTCCAGGACGGCGACTCCCTTGACTTCCTGTTTGACTTCGTCAAACGGCTCTGCGAAAAAACTCTTTAATATCAATATTTTGAGAACCCCCTGAAACGACGAAGTCTGAAGCACGAATCTCAGGGGAACTCATTGTTTAAATGAATGGTTTCTGGCCATTCATCCA # Right flank : GGCTATCGTTCCACCCCGCTCCATCAGCAACCACCGCTTCAGCGCGCTTGCCAGTCAGTAACGAGAGATATTCGGGCGGGCTGTTTACGTAGTTAAGCTCCCAGTGCTTCCTCACAGCCTTGCCCGCCCGCACCATTTGCCGGAAGCTGCGAACTTCGCTTGACTTCGAGTGCACTCAAAGCCCCACCATGCCGGACGTGACCAACAACGCCATCTCCATCGGAGAGCTTTCGCGCCTGAGCGGGCTTTCCACGCACACCCTGCGCTTCTACGAAGCCGAGGGCATCCTGCAGCCTGCCGGGCGCAACTCGGGCGGGCATCGGCAGTACCACCCGGCCGATGTGCTCTGGCTTGAGTTCGTGCTCCGGCTCAAGCAGACCGGGATGCCGCTGGCCGAGATCAGGCAGTACGCGGCGCTCAGGGCGCAAGGCGAGACGACGTTGCAGGCGCGGCTGGCGATGCTCAAGCTCCATCGCGAACGCTTGGCCACCAGGATCGAA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCCGCCGTGCAGGCGGTTGAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //