Array 1 92322-91255 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPZE01000008.1 Cronobacter malonaticus strain 687 contig008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 92321 29 100.0 32 ............................. ATATGAGGGGGGATGATGTCTACGAACAAATC 92260 29 100.0 32 ............................. GCCGGTCACAGGGTTGTCGGAGTTCCTGAACA 92199 29 100.0 32 ............................. GGCACGTTGGCTGCCCGCCGATTATTGCCGTC 92138 29 100.0 32 ............................. GGCGCGCGGTACCGGCACAGGAGGTTGACCAC 92077 29 100.0 32 ............................. TCAGCCGGCACCAGACGCAGCGTCAGGTTACA 92016 29 100.0 32 ............................. ACGGATGAAGTCGGGAAGGGTCAGGTCCGCAT 91955 29 100.0 32 ............................. CGAGAGCAATAGTGAATGGGTGCCCGGTCATC 91894 29 100.0 32 ............................. AACTGTGAGATTACGCCGTACCTTTACCGTGC 91833 29 100.0 33 ............................. CACCAGCAGCTCCCCGGCGGCTTTTCGCCCTAC 91771 29 100.0 32 ............................. AACGCTACGCCGCCGCCGCTGAGGCGGCAGGG 91710 29 100.0 32 ............................. GACGGGCGAGAGCGCCAGAAATCTTCGCGCCA 91649 29 100.0 32 ............................. CGCGCGAATCCGGCCCAGGTCTTGTTCTGCCA 91588 29 100.0 32 ............................. TGTTCTGGACTTGCGACGAGCACAAAACTGAC 91527 29 100.0 32 ............................. CCCAGCCTAACGAGGATTGGGCATTAACGTCG 91466 29 100.0 32 ............................. TGGGTGATGCCAAAAAAGAGCGCCTGGGCTAT 91405 29 100.0 32 ............................. GTGATTTCACGCCGGAGGAATACGGGCAAATC 91344 29 100.0 32 ............................. CCTTACCAGTCCTTTGATTATGAGGAGAGAAG 91283 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.4 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : TGAAACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGGCTAGTTTCGTTTTTACCCTTGGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGCTGAAAAAGTGTAATAAATACAAGTATATAGTTTTAGA # Right flank : TGGTTGAGTAGAATCGCCAGGCCTAGTGGGTGCGCTTTGCTTACCCACCCTACATATATTGATTGCCAGGCCTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120528-118977 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPZE01000008.1 Cronobacter malonaticus strain 687 contig008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120527 29 96.6 32 ...................A......... GTTATAGGTGCCACGGATAGAATTTTTATCAA 120466 29 96.6 32 ...................A......... AACAGGAAACGGTTTTCATCAGTACATTGCCG 120405 29 96.6 32 ...................A......... GTTGATGTTACTGAACGCTTTCAACTTAGTGG 120344 29 100.0 32 ............................. GGGTGTTCGTTGTCGATGGCGCTACGTCAGGC 120283 29 100.0 32 ............................. AGCTGCGGACAACGTCTCTTCTATGCGGCTGA 120222 29 100.0 32 ............................. TTAGGCGGCGCAAAAGTCTCACACCTTCACCC 120161 29 100.0 32 ............................. ATGGGGCTCGGAGATTTTGTTTTCTCTATATC 120100 29 100.0 32 ............................. TGGTGGCGAATAAACTGCGCGCGATCACGTAC 120039 29 100.0 32 ............................. GTACATATCTGTCTATCCCACCTCTCAACGCA 119978 29 100.0 32 ............................. CGCCGCATACTCGCAAAACGCTACGCTCCGAT 119917 29 100.0 32 ............................. CCTTGCCGCTCTTGCGATTAGCCCGGAGCGGA 119856 29 100.0 32 ............................. ATTCTGACGGTATCGGTGACGGTATCGAAACA 119795 29 100.0 32 ............................. ACCATTTACACCGAGTGCAAATATCAGGGCGC 119734 29 100.0 32 ............................. GGATGAAACCGAAGACGCGCAAAAGCGGCTCG 119673 29 100.0 32 ............................. GGCTTACCGCCCTACAGCCAAAAACCTCTGTT 119612 29 100.0 32 ............................. AGCGGGAGCTGGCGCGTATAGCGCTGGACTGG 119551 29 100.0 32 ............................. CCGCTAAATTCAAGAGCTACAGCTCCCGTAAC 119490 28 96.6 32 .............-............... GGTTAGGAAAACCAAAAGGCGCTGGCGCGAAA 119430 29 100.0 32 ............................. CACACCACATCACCGGCACAAGACGGCGCGCG 119369 29 100.0 32 ............................. GATGGGCGCAGCCCGGATGTTGAGCCTTTCTA 119308 29 100.0 32 ............................. ATCTGCACTTCTGGCAACGTTTTGGTAATGCC 119247 29 96.6 32 ...................T......... GCAATCGACGGGCTTAAAGAGGTGCAGGAGTC 119186 29 100.0 32 ............................. ACGGTGGACAGGGTTAGGGGCGATAAAATATT 119125 29 100.0 32 ............................. AAAATAACCGAAGGGTTTTTTAAAAGCGGTTC 119064 29 93.1 32 ..A.........T................ TCGTAGTACGCCTTAACGGTTTCGGCGCGGAT 119003 27 82.8 0 ...........-.-...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGAATGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : CCCAGGTTCTTCGCGCCTGTCAATCACCTCTCCATTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTCCACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGAGCATCACGGACTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGACATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGGTTTACGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTACATCTGATGCAGCGGGAAATGACCGCTGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //