Array 1 199016-197848 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZRS010000001.1 Acinetobacter indicus strain AI23 NODE_1_length_274642_cov_186.878750, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 199015 28 100.0 32 ............................ TGAGTCAATATCATCACGTTTTCGCAGTTTTA 198955 28 100.0 32 ............................ ATGTCGCCATAGAGCTTCATGCCTTCGCCACC 198895 28 100.0 32 ............................ TATGTCATTTTTCAGGTAAAACGACACAACCT 198835 28 100.0 32 ............................ ATCTAATGTGTTAGCTTCAAGCCACGTCCTAT 198775 28 100.0 32 ............................ ATGTTTAAAGCAATAACGCAGTTCGACAGGCC 198715 28 100.0 32 ............................ AACATCAGCAAACGTGCATGCAACCAAAGTGG 198655 28 100.0 32 ............................ CCAGCTTATTAGCTGAAATCCCTTTAGCCTGT 198595 28 100.0 32 ............................ TGATCTTTAATTAGATCAGGGTTTTTTAATGT 198535 28 100.0 32 ............................ TGTAACTGTACCAGTTCAGCAGCAAGACCAAA 198475 28 100.0 32 ............................ ACTTTGTAGCACCAATCTGTTCTTTAGGAAGA 198415 28 100.0 32 ............................ ACCGTGATGACAAGGGCAAAATCGTCAAAACT 198355 28 100.0 32 ............................ GATGTACTCACGACCTTTAGCACGAATTGCTG 198295 28 100.0 32 ............................ AGACCACGCCTGTTTAAGCCCATTTTCTTCAG 198235 28 96.4 32 ..........G................. AAGGAATCGGAGATGATTTTACAACCACGATA 198175 28 96.4 32 ..........G................. ATATTCAAAAGAAAATAAATCCGGCTCTATTT 198115 28 96.4 32 ..........G................. GAACAGACGCTGGCTTAATTGTCTTGAGTCTG 198055 28 96.4 32 ..........G................. CCTATATTTCTTTTCTTCAACTGCATTAGGTT 197995 28 100.0 32 ............................ TGAAGAACTATAGATATTACGAGTAACTTCAC 197935 28 100.0 32 ............................ TATTAAGCGTATTAAAAAAAATATTATGAATT 197875 28 85.7 0 ............G.......T..CT... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.6 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : GCTTAGAAACCCGCAGAGTTCCTTAAATGCCTAGAGGAAAAGTTCACTGCCATATAGGCAGCTTAGAAATGAAGAAGTAGGCGGAAAATTATATTCTCATTGTTCACTGCCATATAGGCAGCTTAGAAATCATCAAGACGCAGCAGGCGGCTTAATTTCAAGTTCACTGCCATATAGGCAGCTTAGAAAATTATCAGGTGCAGACTGTAACTTTAGATAATGTTCACTGCCATATAGGCAGCTTAGAAATAATCCGATTACACAATTATCAGGGTCTTTTAGTTCACTGCCATATAGGCAGCTTAGAAAATTATCAGGTGCAGACTGTAACTTTAGATAATGTTCACTGCCATATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGCTTAGAAAATGGCAGCACTGGCAACCTCTCCAATACCAA # Right flank : AATCACCCCAAATAAAACCGGAGCATCTCCCCGGTTTTATTCTTCATCTATTTATTCTTCTAACAGGCTTCTTAACATCCAGGCAGTTTTTTCATGGACTTCCAATCGTTGGGTCAGTACATCCGCAGTTGGCTGGTCATTGGCTTCTTCCACCACATCAAAAATACTGCGTGCGGTCCGTGCAACTGTTTCATGGGCACGAACCAATAACTCCACCATTTCATTGGCTTTTGGCACACCTTCGACTTCTTCAATCGATGCCAGTTTTACAAATTCTTTATAGGTTCCCGGTGCCGGAAAACCTAGTGCCCGAATCCGCTCGGCAATAACATCCAGCGCATTCCATTGCTCGGTATATTGCGTCATAAACATGGTGTGCAGACTGTTAAACTGCGGCCCGGTCACGTTCCAGTGGAAATTATGAGTCATTAAATACAGGGTATAACTGTCGGCCAGAAGTCGGGAAAGTCCTTCGACAATTTTGGCCCGGTTATCTTCAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 202477-199207 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZRS010000001.1 Acinetobacter indicus strain AI23 NODE_1_length_274642_cov_186.878750, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 202476 28 100.0 32 ............................ TAACCAAGATGTTTTATGTGACAGCTGTGCTT 202416 28 100.0 32 ............................ AAAATAAAATATACAAATAAGAATATTTTAAT 202356 28 100.0 32 ............................ ATTGCAAGTTCAGGCATCGTTACTGCAAAGAT 202296 28 100.0 32 ............................ TCATTATCTAACTTATTAACTTTTACATTATA 202236 28 100.0 32 ............................ TCTCACCTTACAAGAGAACAGAAAAAAACTAT 202176 28 100.0 32 ............................ ATAAAACACCGCCTTCAGAAGTTGGAGGGAAT 202116 28 100.0 32 ............................ CATTGCATCTTTAAGCGGATGAGCCAATAGGA 202056 28 100.0 32 ............................ CATTGTCTGCTGCGGTAAAGTTGATTCAAGGC 201996 28 100.0 32 ............................ TAGTTTGATGCTCACTACATTTTGTTTGGTAC 201936 28 100.0 32 ............................ AGCCGATGAAGTGAAAGACGCTGTAAACGTAA 201876 28 100.0 32 ............................ ATTGTGTATCAGCTGCCGCAGTAGGCTTAAAG 201816 28 100.0 32 ............................ ACTTGAAAAACTTGTAAATGAAGATTTACCAA 201756 28 100.0 32 ............................ TTAATTGGTGTTGACTCTGGGAATTATTTTAT 201696 28 100.0 32 ............................ TCTCCGGCGCGGTGCGTTTAAGTTTTGACTAG 201636 28 100.0 32 ............................ ACAAGATAGTCATAGCCGCTTTTATCCGTCAG 201576 28 100.0 32 ............................ ATCACTTTTGCGGACTATAAGGACGACCTTAA 201516 28 100.0 32 ............................ AATTGGATGCCGCTTCTAAACATGCAGCGATA 201456 28 100.0 32 ............................ TGATAAAACAGTTGAAAAACAAACAGCCAAAG 201396 28 100.0 32 ............................ TCTTGGGTCTAGGTTAAAATTGGTTTAGATAC 201336 28 100.0 32 ............................ CGACAATCGCTTCGGCAATACCCACTTGTGTT 201276 28 100.0 32 ............................ ATCAACTAATCCTTTAAAAGAATTGGATAAAT 201216 28 100.0 32 ............................ TGAATATTTTGGCATTAAGCCATTAATTGAAG 201156 28 100.0 32 ............................ TAACCCCGATATTAGACAAGTAGCTTCATTGG 201096 28 100.0 32 ............................ TAGCTTTGCTAGTGGCGGATTGCGCCTTTCCA 201036 28 100.0 32 ............................ ATTTATCTATTCGCGGTACGCAGTGGATTCCG 200976 28 100.0 32 ............................ ACTTGAAAAACTTGTAAATGAAGATTTACCAA 200916 28 100.0 32 ............................ TTAATTGGTGTTGACTCTGGGAATTATTTTAT 200856 28 100.0 32 ............................ TCTCCGGCGCGGTGCGTTTAAGTTTTGACTAG 200796 28 100.0 32 ............................ ACAAGATAGTCATAGCCGCTTTTATCCGTCAG 200736 28 100.0 32 ............................ GATTGATTGACTAATCGTTACGTCTGTTTTTG 200676 28 100.0 32 ............................ ATCACTTTTGCGGACTATAAGGACGACCTTAA 200616 28 100.0 32 ............................ AATTGGATGCCGCTTCTAAACATGCAGCGATA 200556 28 100.0 32 ............................ TAGAAATTGTTTTATCTGTTAAATTGACGCTA 200496 28 100.0 32 ............................ TGACGATGCCGCAGCCAGAAACCGCTGTAGCA 200436 28 100.0 32 ............................ ATTGCCAATTCAGGCATGGTTACAGCAAAAAT 200376 28 100.0 32 ............................ TGCCATGTAGCCGGCAAGGGCTTGCATGGATG 200316 28 100.0 32 ............................ ATCTTCATGCTTAACCGTGATGCCGTCATCAT 200256 28 100.0 32 ............................ CGCATCAGACCAAACTTCACCATTTACACTAA 200196 28 100.0 32 ............................ TGAGCAGATGCTTCGCTACCGTGCTGCATCAT 200136 28 100.0 33 ............................ CTGAGTTTGCTGTAATTAACTTCTTGTTCACAG 200075 28 100.0 32 ............................ TTTCTTCGCCATGAGTAGCTACTCCTCAATTT 200015 28 100.0 32 ............................ AAAACCACTTTAAGCTGTTCTTTGGTTCGATC 199955 28 100.0 32 ............................ AAAATTCATCAAAGACATAAACAAAAGGCTGT 199895 28 100.0 32 ............................ ACCATTACCACCATTCACTTGCTGATTCTCAG 199835 28 96.4 32 C........................... TACCGTATATAGACGATGCTGAAAAAGTTTTA 199775 28 100.0 32 ............................ ATCAAATGGATGGATGAATCAATTGGCGCATC 199715 28 100.0 32 ............................ TGATCTTTAATTAGATCAGGGTTTTTTAATGT 199655 28 100.0 32 ............................ CAATAAAGCTGTCTGAGTAATCCTGATTAAAA 199595 28 100.0 33 ............................ CAGTATTTGAATGATGAAACCTATTCTGAAAGT 199534 28 100.0 32 ............................ CCCGCAGAGTTCCTTAAATGCCTAGAGGAAAA 199474 28 100.0 32 ............................ TGAAGAAGTAGGCGGAAAATTATATTCTCATT 199414 28 100.0 32 ............................ TCATCAAGACGCAGCAGGCGGCTTAATTTCAA 199354 28 100.0 32 ............................ ATTATCAGGTGCAGACTGTAACTTTAGATAAT 199294 28 100.0 32 ............................ TAATCCGATTACACAATTATCAGGGTCTTTTA 199234 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 55 28 99.9 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : CTTAGAAAATATACATATCAAAGGTTTGCAAGGAATTTCAGTTCACTGCCATATAGGCAGCTTAGAAATGAACGCACAACATGAGCTTTAAACAAACCGGGTTCACTGCCATATAGGCAGCTTAGAAAACCACTTGCCTTGTGTAAATCATTTAGGCAGTGTTCACTGCCATATAGGCAGCTTAGAAATTAGTAAGCTCAACAGGAGTAGGGAATAACCAGTTCACTGCCATATAGGCAGCTTAGAAAATTCATTGAGAAGACCTGCACCAAAACTGTATGTTCACTGCCATATAGGCAGCTTAGAAAATCATAAGACGCACCAATCATTGGCGCCGGAAGTTCACTGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAGGCAGCTTAGAAATAACCAAGATGTTTTATGTGACAGCTGTGCTT # Right flank : ATTATCAGGTGCAGACTGTAACTTTAGATAATGTTCACTGCCATATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAGCTTAGAAAATGGCAGCACTGGCAACCTCTCCAATACCAAGTTCACTGCCATATAGGCAGCTTAGAAATGAGTCAATATCATCACGTTTTCGCAGTTTTAGTTCACTGCCATATAGGCAGCTTAGAAAATGTCGCCATAGAGCTTCATGCCTTCGCCACCGTTCACTGCCATATAGGCAGCTTAGAAATATGTCATTTTTCAGGTAAAACGACACAACCTGTTCACTGCCATATAGGCAGCTTAGAAAATCTAATGTGTTAGCTTCAAGCCACGTCCTATGTTCACTGCCATATAGGCAGCTTAGAAAATGTTTAAAGCAATAACGCAGTTCGACAGGCCGTTCACTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 204018-202669 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZRS010000001.1 Acinetobacter indicus strain AI23 NODE_1_length_274642_cov_186.878750, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 204017 28 100.0 32 ............................ ATGCACAATGGATTGAAGGCGAAACCCGTTAC 203957 28 100.0 33 ............................ GATGTATGGGCGACCCCGCAATATTTGTTTGAT 203896 28 100.0 32 ............................ AAACTGGTATGCGTGAGTTCATTGCACTTCAG 203836 28 100.0 32 ............................ ACCAGGCAAAATTGACGTAATCATCCAATATT 203776 28 100.0 32 ............................ TTGTGTAAAGTCGGTGATGAATATATCAACTA 203716 28 100.0 32 ............................ TAGCCAAAATGGGTAGTAAGGCAGCTTTGTAA 203656 28 100.0 32 ............................ GATTACTAAGGTTGTTCTAAAGTATAACAATT 203596 28 100.0 32 ............................ TATTGAAATTGCTTTGTTTATTAAAAAGAAAT 203536 28 100.0 32 ............................ AAAGATACCGCTAAAATAGATGGAGCTTTAGA 203476 28 100.0 32 ............................ TAAAGTTTGGCGGCTCTAAATCAAGCGCACCT 203416 28 100.0 32 ............................ AAGCAGTGACGGACCTGGGTGAGCTGCAAGAA 203356 28 100.0 32 ............................ TTAAAATTTCATTTTGTTTACTTATCTATGGT 203296 28 100.0 32 ............................ TGATAAAACAGTTGAAAAACAAACAGCCAAAG 203236 28 100.0 32 ............................ TCACCAGTGCCGCGATTACTCTGAGAACGTAC 203176 28 100.0 32 ............................ ATTGAGCGTGATGAGTCAATCATCCAGAAGAT 203116 28 100.0 32 ............................ AAGTCAAACAAGCATACATGCATGAGGTTGAT 203056 28 100.0 32 ............................ TATTGAGGTTATTCGTGGCGGCTTAGAACAAG 202996 28 100.0 32 ............................ ATATACATATCAAAGGTTTGCAAGGAATTTCA 202936 28 100.0 32 ............................ TGAACGCACAACATGAGCTTTAAACAAACCGG 202876 28 100.0 32 ............................ ACCACTTGCCTTGTGTAAATCATTTAGGCAGT 202816 28 100.0 32 ............................ TTAGTAAGCTCAACAGGAGTAGGGAATAACCA 202756 28 100.0 32 ............................ ATTCATTGAGAAGACCTGCACCAAAACTGTAT 202696 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCATATAGGCAGCTTAGAAA # Left flank : AAAAATGGCTCAGCCAATATTTGGATTATGTGCATATTAGTTCTGTTAAAACTGTGCCATTAGATAAATTAACCGGTTATGCAGTTTATAAACGTAAGCAAGTGAAAAGTAGTGCGGAAAGACTCGCTCGGGCGGAAGCTCAAAAAGGCCGTTATGATTACGAAAATGCGTTGGCACATTATCGGAAGTTTATTAAAACAACGAACTTACCATTTATTAATATGCTGAGTGATAGTAGTCAGAATACAGAGTTTATTCAGAAGCATGCATTTAAGTTATTTATTGAAAAACTTCCCGCTGAAAAATCTGAAACTCAGGTTTTTAGCACCTATGGTTTAAGTTCGGAAAGTGCTGTACCTGAATTTTAACCCAATATTTTTTTGATTCTTTAAAAGCTTAATAAAATCAATGAGTTATGATAGTGAGTTGAAACTTGGGTCTTTTATGGGTTTTGGGCTTTAACTTACTGTTATAACTTTATTTTTTGTTTTAAAATTACT # Right flank : ATCATAAGACGCACCAATCATTGGCGCCGGAAGTTCACTGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATAGGCAGCTTAGAAATAACCAAGATGTTTTATGTGACAGCTGTGCTTGTTCACTGCCATATAGGCAGCTTAGAAATAACCAAGATGTTTTATGTGACAGCTGTGCTTGTTCACTGCCATATAGGCAGCTTAGAAAAAAATAAAATATACAAATAAGAATATTTTAATGTTCACTGCCATATAGGCAGCTTAGAAAATTGCAAGTTCAGGCATCGTTACTGCAAAGATGTTCACTGCCATATAGGCAGCTTAGAAATCATTATCTAACTTATTAACTTTTACATTATAGTTCACTGCCATATAGGCAGCTTAGAAATCTCACCTTACAAGAGAACAGAAAAAAACTATGTTCACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTGCCATATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //