Array 1 6865017-6864808 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069396.1 Archangium violaceum strain SDU8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 6865016 29 93.1 31 .........AC.................. TGCCACGGTGAAGGCCGAACGGGGCCGCTCC 6864956 29 100.0 31 ............................. CGAAACCGTGAAGGCCGAGCGCGGCGCGAAG 6864896 29 89.7 31 ..................AAG........ AGACCGGGTGAAGGCCACGCGGGGTCCGAAC 6864836 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 4 29 95.7 31 TTCTACGAGGAGATCGGCCGCAAGGGCGG # Left flank : GTTGATGAAGTCCGGGCCCAGCAGCCGCAGCATCGTGAGCCCCGCGATCGAGGCCAGCACTGGTGCCAGCATCCGGACCCACATCTTCAAACCGCCACCGCCGCCACCCATCACGCCATGCCTCCCAGGCTGGATCGGCGGGAAAGGTGGGACAGCTAACGGGAATCGGCAATGCGAACTGGTGTGTTCTTGACACTGAAGCGTCCGGGCGGGCAGGCCGTAGTCACGCCCGCCGGGACAGCGTGTACCCCCAACCCCCCAAAATCATTGGGGTTTTGGATGTGCTCTGTCCGGCGTGAACGGCTGGCGGTGTACGGAGCTTGCTTGCATCGGGGCGCTTCCGTCCCAAGTTTTCAGGCAAGGGGCACCCTCGCGGGGAAGGGGGAGTCAGTAGGAGGAGGCAAGACATGCAGCAGGACAAGGACAACAAGGGCAGCATGACGGTGGCCGAGGCGGGCCGAAAAGGCGGCGAGACCGTGCGCAACGAGCGCGGCCGGGAG # Right flank : TCAGAAGGTCAAGAAGCTCATCGAGGAGGGCAAGCGGGCGGCTCGCGCGGCCATGGAGAAGCAGGAAAGCGCGGGCACGGGCACACAGCAGCAGGAGGAGCCGGCGTCATCTCCGGCGGCGCCTCCCGATGAGTCGAGCCCAGGCCGTAGCGAGTAACGTGACGAAAGGGCCGCGGACCGGATAGACACGGGTCGTGTACCTCTTCCTCGCGTTCCTCGACCACGCGGACCAACCAGAACGGGCCATCCGGCGGCTTCGGGACTTCGGTATCCCGGAGCCGCTGGTCATCCGGGCTCGCAGCGCCATGGCCACCCTGTCGGCCGAGGTGCCCGTCTTCGCCGGCCTGCGCGGACTCGCGCTCGGGGCGGATGAGGACCAGCTCATCCTGGTGAGCCTGATGCCCACCCTCCCCGCCGAGGAGGTGGAGCGGCTCGTCCAGCGCGTCCAGCTGGAGATGGACGCGGACGACCCCCCGATGGGCCGTCTGGTGGCCCTGCCA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCTACGAGGAGATCGGCCGCAAGGGCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 2 8113240-8111924 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069396.1 Archangium violaceum strain SDU8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 8113239 36 100.0 35 .................................... GCGTGGTCCACGTACTGCTGGCACCACGCCTGGAA 8113168 36 100.0 33 .................................... CTGTCGCGTAGCAGAGAGGGTGCGCTCCTGAAG 8113099 36 100.0 35 .................................... TATCCTTCCGGGGCATTTGTGTTTTGGAGGCTGTA 8113028 36 97.2 34 ....................A............... CCCACCCACAAGTTCGACTCGGGGCACGGGCGTA 8112958 36 97.2 37 ...........T........................ GTGTCGCGTGCATCCGCCGCCGTAGCCGCGATCAGCC 8112885 36 100.0 34 .................................... TACCCATAGCCGCCGGGGTTGCCGTAATAGGTGG 8112815 36 97.2 37 ........................T........... ATGTCGGGGGCGTTCTCGACGGTGAACTCCGGGATGT 8112742 36 100.0 36 .................................... CTGATGCCCTTCCTCTTCGTCTCAACCCTCGCGGCT 8112670 36 100.0 35 .................................... ACGTCCACGGGCAGGCTCATCTTGGAGTAGCTCTC 8112599 36 100.0 33 .................................... TGGATGTCTCCTGGGTTCCTCGACTGGAGCCCC 8112530 36 100.0 35 .................................... AACGTCTTCAGCGTGGCCTACTCCACGGTGGCTGA 8112459 36 100.0 34 .................................... GCCACGTCCAGGGACTGGTTGGCGGGGACCGCCA 8112389 36 100.0 35 .................................... ATCAAAGCTGAGGAGGAACGCGAGAAGGCCGCGAA 8112318 36 100.0 35 .................................... AGGGTGTTCGTCTCGGAGAAGGACACGATTAGCCG 8112247 36 100.0 33 .................................... GTAGAAGGGGAGTCCGGAATTCTGACGGTTTCG 8112178 36 100.0 37 .................................... AAGAGGACCGCCTCCCTGCGCTTCAGCAGGAAGGGCA 8112105 36 100.0 37 .................................... CGGACGCGGGCGCTGACGGTGTAGCCGGCGGGACTCG 8112032 36 94.4 37 ........A....................C...... TTGTTACCGGTGGCCAGCCACGTGCCGGTAATCGCCA 8111959 36 97.2 0 ........A........................... | ========== ====== ====== ====== ==================================== ===================================== ================== 19 36 99.1 35 GTCCCGCTCGCCGTGATGCCGAGAGGCGTTGAGCAC # Left flank : TTCCCCGCATCGCCCGCCGAGGCGTGGAGTCGAAGGAGCGTTTGGGACGCCATCGCTGGGTGGTGGAGCGCTCCCTGGACTGGTTCCACCAGATGAAACGCCTGCGGATTCGCGAAGAGCGGAACCCACAGATGCACCTGGCACTCCTTCGCCTTGGCCACTGCCTCCTTCTCTATCGCGTGCTTGAGCGCCATTTACGAAATGGCCCTGAATAGGCAGGGCATGTTACCTGACCTCTCAGGTCCATTTTTGAAACGAGCTCTTAGGGTGTGGAGGGCCCGCCAGCCCTCCCGCCCCGGTTTTTCTTCCCGCTCATCCTTCTTCTCCCCAGGACCTGCCCGGCCCGTCACCGGGCTGTGTGCAGTCGCCCCCCGCGCGATCAGCCCGCGGCTGCTCGCCACCGGTGGGCGCCTGTAGGCGGGACTATACCTCAGCCGTAGGTCTCGGTGGGATAACCTCTTTCGTAGGACTTTGAATCAAGCCTGCCCATGGCGGATCTC # Right flank : ATGAACTTTCTCAGGCTCTTCTGTAGCCGGCCCTCAAGGCGATGGTGTTTCTGTACTGTGGAGGGCTGGTGCTCAACCCGCCGCTGCCGGGGCATGTAGCCATGCGCTGCGGCGGGACTTGCTTGCCCGACGGGCTGTTGCCGGACATCGTCCGGTGATGCGGTCCATGGCCGAACCTCTGGGTCGAGGACCATCGCTGCCGATGTCTTGAACTCTCACCTCCAACCCACGGATTGTGCAGAAGAGCCTGAAATAAGTGGAGCCTCAAACCGAGCCATGTTCCAGTATGAAATAGTACGAATGGTGGACACCGTGAAGACCTTGATCCCCTACATCCTCTTGGTGGCGGGCATTCTGAACGGAGTATTCGCGTCCGGTTGTGCAGTTGGGATGTCCTCCACCTGCTCGACTGGTGCTCACTGCACGGCAAACCCATCCACGTTCCCTGCTCAAGCAGCCGCGACGGACTGCAGACCTGGAGATTCAACGATGGTGTGCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAGAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 11961607-11959075 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP069396.1 Archangium violaceum strain SDU8 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================================================================================== ================== 11961606 24 91.7 48 C....................T.. TAGAGCTTCGTTTGGTTCAGGATGTAGAACCGAGCAGTGCCCCTGGCT 11961534 24 95.8 52 ....................T... TTGTGTCCGTGTCCACGACCTCCGGTGTAGAGTTCATGTTCCCCCCCTCGCC 11961458 24 91.7 49 .T..................T... TCCGAGCGCAGCCACCACCCGTCAGCCTGGAGCGCGAAGTCCCCTAGCC 11961385 24 91.7 46 ......T.......T......... TCCTGGTGGTCGAGCATCTCCTGGACGAAGGAAGGTCTCCTTGGCT 11961315 24 95.8 51 ..............T......... CCCGCCCTCCTTCGTCTCGCTGTGGCCGATGCTGACTGAGTCCCCCTCGCC 11961240 24 95.8 50 .T...................... ACCCGCACGTCCGCGTTCTCGTGCGCCATCGCAGCGAGGTCCCCCTCGCC 11961166 24 100.0 46 ........................ AGGTAGGCCTCGGCCGGCATGTTGGGCACCTCCAGTTACCCTCGCC 11961096 24 100.0 107 ........................ CTCACCAAGGGCTTCCAGGCCGACCTGACGCAAGTCCCCCTTGCCGAGAGGCGTTGAGCACATCTCGCCGAAGCTCAGCAGCGAGTTCTTTTCCTGAGTCCCTCACC 11960965 24 100.0 45 ........................ AGTTCGACACGCTTGAGGCTCCAGGGTCGTTGTTCATCCCTTGCC 11960896 24 87.5 49 .......A............T.G. GTGTCGCGCATCACTCCCTTGCTGCCTTGGCCGTCCAGTCCCCCTCGCT 11960823 24 91.7 42 .T....T................. TCCTTCCACCAGTCGTCGGCCATCAGCGCTGTCCCCCTGGCC 11960757 24 100.0 47 ........................ TACCACTCCCGCACCGACGCTGTCTGCGGGTGGATATCCCCCTTGCC 11960686 24 100.0 49 ........................ TCATCGTAGTTCGTGGTCTCCAGTTTCTTCTGCTTCCGTCCCCCTGGCC 11960613 24 100.0 51 ........................ CGGAGCCCAGGCCCGTGGCGTGTTGCCGCCCGTCACGGGGTCCCCCTGGCC 11960538 24 95.8 48 .......................T AGGTACTGGTAGGCGATGGCCCCGCCGGCACCGACCGTCCCCCTGGCC 11960466 24 100.0 47 ........................ GCTGCGCCCAGTGGACCGCCCGCGGTGAAGCCCTGGTCTCCCTCGTC 11960395 24 95.8 50 .T...................... ACGGCGAAGTCGCGGCAGGTATAGGCGTCCTCGCACGGGTCCCCCTGGCC 11960321 24 100.0 48 ........................ TCGGCGATCGTGGCCGCGTTCGGCTTCAGCACCTCAGTCCCTCTCACC 11960249 24 95.8 50 .T...................... CTGCCCACGAGGTTGACGACGAAGGCGAATGCGGCGACGTCCCCCTGGCC 11960175 24 100.0 49 ........................ TTTATTGCGAGGGTGGAGAGTACCACTGCCGCGCGGGGGTCCCCCCGCC 11960102 24 91.7 49 .T.............A........ TACCTGTCGAGGTACTTGTTGCTGCGGAAGGAGAGTCGTCCCCCTTTCC 11960029 24 91.7 47 .T.......G.............. GAGTTGGCGGGGACGTTGAATCACTCGCGCTCGTAGTCCCCCTCGCC 11959958 24 100.0 48 ........................ TGCTCCAGCGCCACGTTGTCGTACTCGGTACCGGTCGTCCCCCTCACT 11959886 24 95.8 49 .T...................... TGGGCGGAGCTGACGGGACGCGCATCGCGCGCCGCTGGTCTCCCTGGCC 11959813 24 100.0 48 ........................ CTGCGATAGACATTCTTGGTCTTGAGCTTCTGGTCAGTCCCCCTCTCC 11959741 24 95.8 47 .................C...... ATGGAAGTCGTGTCGGCCGTGTACGGCATGTTCTGGTCCCCCTGGCC 11959670 24 100.0 47 ........................ AACGGCCGCGACGCTTGATGACCGCACGCGCTCAGGTCCCCCTGGCC 11959599 24 100.0 46 ........................ TCCCGGGGGTCGAACTCCGAGTTGTTGAAGACGTTGGTCCCCCGCC 11959529 24 100.0 47 ........................ AGCGGCGCTCTCAACCTCACCACCGGGCCCCTGTCGTCCCCCTGGCC 11959458 24 100.0 48 ........................ CCAACTTCATCGTGGTGCACATGACCACCAAGGAGGGTCCCCCTCGCT 11959386 24 95.8 47 .T...................... CGGTCCATCCGCCTGATCTGGTTCTCTCAGGAGATGTCCCCCTCGCC 11959315 24 100.0 47 ........................ CAGGAAGGCTGGCGTGTCGACGGCATCGAGTGGAAGGTCCCCTCGCA 11959244 24 91.7 49 .T.....T................ CGAGAGCACCAGCCCCTCCAAGTGGGCGTGATGAGGGGTCCCCCTCGCA 11959171 24 91.7 49 .T.....T................ AACGACACGAACCGCTTCTTCGTGACCACGACGCGCGGTCCCCCTCGCC 11959098 24 95.8 0 .T...................... | ========== ====== ====== ====== ======================== =========================================================================================================== ================== 35 24 96.5 50 GAGATGCCGAGAGGCGTTGAGCAC # Left flank : GTCCGGCCTGGTCCGGATACTTCCGAGCGCGGAGCCACATGCCGCCCACGCGCACGACGACGAAGAACGCGAGCAGGAGCACGCCAATCCACTGCCAGCCCGAGGGCCGAGTGAGGGCGACGGCCCAGGCGGCGATGAAGGCGACGTTGCCGAGCAGGAGCAGCAACTGAAGGCGGACGAAGGGGCTCATGGGGCTTCGGTAAGGCACGGAGGGAGCGGAGTCCAGCGCCTCGTCGACAACCCGTGCACGAAGTGACGGCCGGCGAGCGTTGGAAATCGAGCGATGGATATAGGCCGTGGGGGCCCATGGTTTCCTGGCGGTATGAACAGCATCTGGATGCATCTGCGTCGTGGGGTGGTGGCCGGGCAGAGGAATGGTTAATAGAATCGAGGGTGGATGCTCTTTGACAGGTGAATAGCTGCTTCAAAGAAGATTGCCGAGGACTCACCGGGCGAGCGCTCATGATGATGTGCCGAGGGAGATAGGGAACCTCCTCGCT # Right flank : GAGGACGAGCGCCAGCCGAGCCGCAGTACCTGGCCGGAGTTCGGTGTTGAGGTAGTGGCTTGAAGAGGGGGGAGGGCGGTGCTCCTGGCGAGGGTCGCGAGTGGGGCAAGGAGGAGCAGCAAGCGAGCAGGCATACGACGCTGGACAAGGAGAGTTCGACGCACCACAAGCTCTGCGTTGCCGGGAACAGGGCTTTTGCCCTTGAGCGCGGGAGCGGCGATCATGGTCCCGCGATGGAGCCCAGCCCCCCCACTCATGTTGGTCCCTACCGGCTGTTGCACCTGCTTGGCAGCGGGGGCATGGCAAGCGTCTATGCCGCTGAACACGGGCCTCAGGGGCAACGTGTGGCCCTCAAACTCCTGTCCCCCGAGGCGGCACGCGAGCCGCACCTCGTTGCCCGCTTCCTGCAAGAGGCCCAGGCCCTGGAGCGGCTCCAGCATCCGGGGGTCGTGCGCGTCCTGCACTCGGCGCGGCAGGGAGACACGGCCTTTCTCGCCATG # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.25, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGATGCCGAGAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //