Array 1 112070-111806 **** Predicted by CRISPRDetect 2.4 *** >NZ_CARR01000018.1 Salmonella enterica subsp. enterica serovar Agona str. 56.O.08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ==================================== ================== 112069 24 79.2 36 ...TT.T.....T.........A. GCTGCCGTCAGGACTGGAGGTGCTTACTGTCGAAGA 112009 24 100.0 36 ........................ ATTGCCGGCAGGACTGGTGGTGCTGACGGTATCAGG 111949 24 95.8 36 ...............T........ GTTGCCGGCAGGACTACAGACGCTGTCGGTAGCAGG 111889 24 100.0 36 ........................ GTTGCCGTCAGGACTGGAGGTGCTTACTGTCGAAGA 111829 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ==================================== ================== 5 24 95.0 36 TAACCAACTGACCAGCCTGCCGCC # Left flank : GAGGATGTGGTCAGCAGATTTGAACAGCTCAGGATGCTCGTGTATGCCGGATACGAGGAAAGCATTCACTCCGGCCGCCACGGGGAAAGCCACTTCTGTATCCTGGATGCAGACAACCAGGAGATATTGTCGGTCACCCTTGATGACGCCGGGAACTATACCGTGAATTGCCAGGGGCACAATGAAACATATCGCTTCACCATGGACATAGAACAGGGAGAGGAATGTACAGAACATGCGGAAGGGGCATCCGGGACACTCCAGGTATCCCCCCTTCCTGATCCGGCGGCTCCACAGACACCAGCAGCGTATGATGCTGTCTGGTCAGAATGGAAGAGGGCTGCGCCAGCAGAAGAGTTACGCGGTCGTGCTGCGACGGTACAGAGAATATGTACCTGCCTGAATAACGGCAGTCGAGAGCTTAATGTGGGAGAGTCAGGCCTTACCGCCTTACCAGACTGTTTACCAGCGCATATAACAACATTGGTTATTCCTCATAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGTTGGTAGCAGGTAACCAACTGACCAGCCTGCCGCCGTTGCCGGCAGGACTACAGATGCTGTTGGTAGCACGTAACCAACTGACCAGCCTGCCGCCGTTGCCGGCAGGACTACAGATGCTGTCGGTAGCAGGTAATCAACTGCCCCGCCTGCCGCCGTTGCCGGCAGGACTACGGAGGCTGTTGGTAGCAGGTAATAGTCTGCCGCCGTTGCCGGCAGGACTACAGACGCTGTCGGTAGCAGGTAACCAACTGACCAGCCTGCCGCCGTTGCCGGCAGGACTACAGGTGCTGTCGGTATCAGATAATCAACTGACCAGCCTGCCGCTGTTGCCGGCAGG # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAACCAACTGACCAGCCTGCCGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 109377-108676 **** Predicted by CRISPRDetect 2.4 *** >NZ_CARR01000006.1 Salmonella enterica subsp. enterica serovar Agona str. 56.O.08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109376 29 100.0 32 ............................. AAAAATAGTCCTGAACGATAGCCCGCGCGGTC 109315 29 100.0 32 ............................. CAGGAGTGGTTGGAGACTGTCGTCAAGCCTGA 109254 29 100.0 32 ............................. TTTTATAACGACACTAAAACCCGCCAGTTATA 109193 29 100.0 32 ............................. ATTTTAACGGCAAGGTCGACAGGAGATACCAC 109132 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 109071 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 109010 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 108949 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 108888 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 108827 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 108766 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 108705 29 93.1 0 A...........T................ | A [108678] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGTTCCCCGCGCCAGCGGGGATAAACCGAGCGAAAAAAAAGACGACGAACTCGTCACAACGTGTTCCCCGCGCCAGCGGGGATAAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCCAGCGGGGATAAACCGAAAAATAGTCCTGAACGATAGCCCGCGCGGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGTGTGGTCTGTGCATAACGGTGTAACAGAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGGGAAGATTGGGCGCTTTCAATATCTTCCAGTGTTTCCCGCGCCAGCGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 110122-109849 **** Predicted by CRISPRDetect 2.4 *** >NZ_CARR01000006.1 Salmonella enterica subsp. enterica serovar Agona str. 56.O.08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 110121 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAT 110060 29 100.0 32 ............................. GAGGCGCTGGCCGCGCTGGCCGCAGAAAAATT 109999 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAT 109938 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 109877 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTCTCGTCACAAA # Right flank : AGCGAAAAAAAAGACGACGAACTCGTCACAACGTGTTCCCCGCGCCAGCGGGGATAAACCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGCCAGCGGGGATAAACCGAAAAATAGTCCTGAACGATAGCCCGCGCGGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGTGTGGTCTGTGCATAACGGTGTAACAGAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGGGAAGATTGGGCGCTTTCAATATCTTCCAGTGTTTCCCGCGCCAGCGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTCCCCGCGCCAGCGGGGATAAACC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //