Array 1 939867-940871 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051416.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM 20744 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 939867 29 100.0 32 ............................. GTTGCACGCATTCCAGTGTGGTTTAAAAAACA 939928 29 100.0 32 ............................. AACAACCCGCTAGTATTACAACGACTAAAAGT 939989 29 100.0 32 ............................. CGGGCGTACACCAGAACGGCTATTCAGGCACG 940050 29 100.0 32 ............................. GCGCAGTATCAGGGAACGGCCGTTATTACGGT 940111 29 100.0 32 ............................. GAGCGTTTAAAAATGCTCGATACGCTCCAGCA 940172 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 940233 29 100.0 32 ............................. ATTCTTGACTGGCTCGATACGCTCGCATCCAT 940294 29 96.6 32 ................A............ TCACAGTTGAGTTTTGCCGAATTTTTCAACAC 940355 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGACTT 940416 29 100.0 32 ............................. CAGACTGTGGATCTCAATCGGCCCGGGCAACT 940477 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 940538 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 940599 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 940660 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 940721 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 940783 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 940844 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 957140-959182 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051416.1 Salmonella enterica subsp. enterica serovar Muenchen strain CVM 20744 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 957140 29 100.0 32 ............................. CCCTCTTTCGCCGCTACCGCAGCTAACAAGAT 957201 29 100.0 32 ............................. ATTTTCATCGCCAGACCAGGATCGGTGGGGTT 957262 29 100.0 32 ............................. AAAAATTCGGCGCCAGCATCGCTGCGGATACT 957323 29 100.0 32 ............................. GCTGGCGGTGTACTCATCGCTTTGCACGGTTC 957384 29 100.0 32 ............................. GAACGCACGTCGCACAATACGACGGTTAAAAA 957445 29 100.0 32 ............................. CGCGCCACGGGTAAGACCTGGGAAGAGACGAT 957506 29 100.0 32 ............................. CTCAAGTAAACGTTAGCACCACGAATATAACC 957567 29 100.0 32 ............................. GGCATTGCGTGGTATCGGGTTTGCTAATATTT 957628 29 100.0 32 ............................. GCGCCCGTCGGGGGAAGCAAGGCGGACGGGAC 957689 29 100.0 32 ............................. TAGTCCATAGCCTCAGCCCGGCTTGTCATCCT 957750 29 100.0 32 ............................. ATTACGAGACATTGTGGAAATCCATCTACGGC 957811 29 100.0 32 ............................. AGGCGTGCATCAATTGCTATAAAGCCGTAGTC 957872 29 100.0 32 ............................. ACTGGTTGAGAAGATCCGCCGCAGAATCAGCG 957933 29 100.0 32 ............................. ATCACATCACGCAGATATTATCTCATTACAGC 957994 29 100.0 32 ............................. CGCCTACGCCTGGGAGCTAATCCCCGACAGCA 958055 29 100.0 32 ............................. CCCGTTCCACGGCGAGAAAACCCCGTCCTGCG 958116 29 100.0 32 ............................. CCGTTGACGGCGAGCGCAGACCTCGGAAATAA 958177 29 96.6 32 ............................T TGCCATAGAAGAATCTGACCCTGATAACTGGC 958238 29 100.0 32 ............................. GCGTCCTCGCCAGCGTCAGCCGGGTAATACAA 958299 29 100.0 32 ............................. GCCTGCGTGAAAAACAGGTTCATCAGGATGCC 958360 29 100.0 32 ............................. CTCCTTGAGCAGGGGAAACCCTGCCTTTTCCA 958421 29 100.0 32 ............................. GGCTGAGAAGATCGGCGGGCAAACTGCCTATG 958482 29 100.0 32 ............................. TTTATTCGCCGAAAGAGGGCGACATAGTTATT 958543 29 100.0 32 ............................. AGCCAGGCGTTATCTTCTGGCGTTCTTAGCGG 958604 29 100.0 32 ............................. GTGACAACGGTCCCGGCGCTGGAAAAGGTGAA 958665 29 100.0 32 ............................. CCAGATAGAGGCTTTAACATGAAATCAATTAC 958726 29 100.0 32 ............................. GGGGAGGGTGAATTTAACGAGCTGTATAAAGC 958787 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 958848 29 100.0 32 ............................. CTTCATCTCGCAGTACGTAAACGCCTGCATCA 958909 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 958970 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 959031 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 959092 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 959153 29 96.6 0 A............................ | A [959179] ========== ====== ====== ====== ============================= ================================ ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGTGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //