Array 1 34179-30785 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHYF01000014.1 Acinetobacter baumannii strain AB_363 NODE_14_length_67159_cov_66.131749, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 34178 30 93.3 30 ............................AT CTTGAGTTCAAATAAACGAACAAATGGAAT 34118 30 100.0 30 .............................. AGTTATTCCTCGTTTGAAGTGTGCCCAAGT 34058 30 93.3 30 ............................GA GTGGCTTTTAAAAAACTCTGTTCAAAAGGT 33998 30 93.3 30 ............................AA GAACTAGAGAAGTTGTAGTGGCAATTGAAA 33938 30 96.7 30 .............................T CTAAATCAGCAAGCTTATTCCAATCGGAAT 33878 30 96.7 30 ............................A. CAATTTATGGTAGATGAATCAGAAACACAA 33818 30 100.0 31 .............................. TTGTTAATGCTATTGAGAAACAGACTACTGA 33757 30 96.7 30 .............................A GAGGTTGTCCCAGAGACGCAAGTAATCAAC 33697 30 93.3 30 ............................CA ATGATGGCGTAGAGTCTCAGTTTATTTTTA 33637 30 93.3 31 ............................CC AGTGCGTGAACATTATTCTTTCTGCATCAGC 33576 30 93.3 30 ............................AT CAAAGTGCAGAGATGAAGAAGTATTTTTAC 33516 30 96.7 30 ............................A. CCGTAGCGGTCCCCAAAATTAACTTTGCAA 33456 30 100.0 30 .............................. TACGTCAAATTACTTCTTATTGTAGTTGGG 33396 30 96.7 30 .............................T CATCATCAAATAAATCTTCGTATTTAGTGA 33336 30 100.0 30 .............................. CTGCTTGAACAACATGAATTGCCCATTCAG 33276 30 93.3 30 ............................AA AAATATTGATACGATGGATTAACAACAGAA 33216 30 96.7 30 ............................A. AAGCGTCATGAATATTTGGTTTGGCTTGAA 33156 30 100.0 30 .............................. ATCATTAGTGCCTCTTCGGAAATCAACTTT 33096 30 93.3 30 ............................AA AGAGTATGTATTAGAGGGCTATGCACTTAC 33036 30 100.0 30 .............................. AAAATAATTAAATGGTCTATCACCGTCTTC 32976 30 96.7 30 ............................A. TAGATGCAGCACACAGCAATCAGGGCGCTC 32916 30 96.7 30 ............................A. CGCGGAAGAGCATTCGGGTGAGTTGGATTA 32856 30 96.7 30 ............................A. GCAAAAGGAACGGCTGGCTAACGCCACTAT 32796 30 93.3 30 ............................AC ATTCCAGCAAACAACAGTGTAGATCCAATT 32736 30 96.7 31 .............................C TTTCACAAAAAATGATGGTTATTTTGAATGT 32675 30 93.3 30 ............................AA TAAACAGCATTTCATCAGTTGCGTAATAAA 32615 30 96.7 30 .............................C CAAAAGAGCAAGCAGAATTTAGTGCATGTA 32555 30 93.3 31 ............................CA CCAACCGACAATGTAGCATCGGCAACTAAAC 32494 30 96.7 30 .............................A TGACACGCTATCAAGTGACGGTGCAAATAA 32434 30 100.0 30 .............................. ATCTCTCTTAGCTTTGTATTCAGGGTCTAA 32374 30 100.0 30 .............................. CTACAGATATAACTAATCAGTTAAATAACT 32314 30 96.7 30 .............................A TCCATTTTCTGATGGTGGCGCATTCTCTTC 32254 30 96.7 30 .............................C AAGCAAATCCCGATGATCCTACAGCACCTA 32194 30 93.3 30 ............................AC AAGTTAGAGCTATTAGAAAGAATTATTTAA 32134 30 96.7 30 .............................T TCGGGGTGGTTTTATTTTGCCTAAATTAAT 32074 30 93.3 30 ............................AC ATGAAAAACTAGCTTCCACGACATCAATCC 32014 30 93.3 30 ...........T.................C TTGCTGTGCATAAGCCTGTAAGTTATTTAA 31954 30 96.7 30 ............................A. TTGCCCGGATCACGACGATCATTAGAATAA 31894 30 96.7 30 .............................T GGAGTCATCAATAAGAAACAATCCATTTAA 31834 30 96.7 30 .............................T CTGGATCTATTCCAAAGTGTTTGCAAATTT 31774 30 96.7 30 .............................T AATGCAATTCGGAGCATGGCGTACCGAAGA 31714 30 96.7 30 .............................T GTGTGGACTCCTCAATCAGCATCTTGAAAT 31654 30 93.3 30 ............................GC TCACAAGTCAAATACTATTTTGCATTATTT 31594 30 93.3 30 ............................AT CTTTTTGCTTATAGTAACAAGTAGCAGAGT 31534 30 93.3 30 ............................GA ACTGCAATGCTGTGAGTAACGAACCTTGAT 31474 30 93.3 30 ............................AC TTACCAGACACAGCACCTTCTTGAAGCATC 31414 30 93.3 30 ............................AT GACGGTTAGTTACTTTTGATGTACCGCCAC 31354 30 93.3 30 ............................AC TAACTCACCGCGATAAATAGACGCGATACC 31294 30 96.7 30 ............................A. AGACACAGAAAAAGAATGTGAACAATGGGC 31234 30 93.3 30 ............................GT CGATTAAATCAGTCAAAGGACCCTAAGCCA 31174 30 100.0 30 .............................. TAAAGGATGTGAGGAACGTCGTGAGTGGAT 31114 30 93.3 30 ............................AA CTGACTAGTGATTTGAGGAATGTGCTCACC 31054 30 93.3 30 ............................CA AACACAGCATTATTGGGCCTTCAATACGAT 30994 30 93.3 30 ............................GA TGCAGGCGGAGTCTGCTATGCGACTGGTAC 30934 30 90.0 30 .................T..........AA ATAACCACGGTTATGGTAAGTCACTTTTAC 30874 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 30814 30 66.7 0 ...T...A...T.....T..C...AGCG.T | ========== ====== ====== ====== ============================== =============================== ================== 57 30 94.9 30 GTTCATGGCGGCATACGCCATTTAGAAATG # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACTAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAATAGACAAAGCCGAACAGCCTGCTGAAGTTGAACAGATTAAACAGTTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4224-3717 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHYF01000069.1 Acinetobacter baumannii strain AB_363 NODE_69_length_11099_cov_62.871257, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 4223 27 75.0 27 T...C.-....A......AG..G..... TTAATGCTTAGCATTGATTGATATGTG 4169 28 85.7 29 ...T.G.............G.......T ATAGGGCAATTCTGATCTTAAGTATTTAT C [4161] 4111 27 78.6 39 ....GC..C.AT...-............ GCCCTATTTTTCATTTTTCCTTCAAAAGTAATTTTGAAA G [4093] 4044 28 85.7 32 C..T......A.C............... CAGCGTTCTGCTTTACCGTTTACATATCGCGG 3984 28 92.9 32 ............CC.............. TTGCTTAGGCAAATGCACTGATTTTAAAGAAG 3924 28 100.0 32 ............................ TATCATGAACATTGTTCCTTGACCCACGGACA 3864 28 96.4 32 .........T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 3804 28 96.4 32 ...G........................ TGAGGGTGCCACACATTGGCAGGCTGGAGTGT 3744 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 9 28 90.1 32 GTTATTCATCGCATAGATGATTTAGAAA # Left flank : TGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTATTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGTTCTTACTCCTCACAAATAGTAGTGATCGGAGGTAGATCTAGGCCGTGTTGTAGAGTCGAGTATGACAAAAATTTAAAATGTTGTGCTATCATTTGGATAGTCCTTATTTAAGTAGTAATAGCTTTGAAAATGGACAAAAGCAGGTATGAAGTTTGGTCACGGAATACCTGCTTTTTTTTATGCCTTTTCATAAATTAAGATATATTTGTCCAAAATCCTTGTCAAACATTATTTTTATTTAAATAAAATTTTACTATCAATCTTATCTAAGTATTAAGGGTAGTGATTTTTTAAATGAATATTAAGTATTCCTAATTAAGATTTGTTATGATACAACTCTTACATAG # Right flank : ACATTCAAAGAGGCTCATCGAATCCAATCGAATTTTATCATCGCTCAGATGATTCAAAATTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCTGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGT # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9780-11008 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHYF01000069.1 Acinetobacter baumannii strain AB_363 NODE_69_length_11099_cov_62.871257, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 9780 29 100.0 31 ............................. GACGGAAATCCTACTGGTGGACAATCTTTAT 9840 29 96.6 31 ............................T AAAAAGAAAGTGAGCTAAAGCAGAAGCGATA 9900 29 100.0 31 ............................. ATCACCCTGATCGGCTGCATTGGCTTCGGTC 9960 29 100.0 31 ............................. ACCTTAGATTTCGTGTCACGCCGATGGACTG 10020 29 100.0 31 ............................. ACGATTTGAAACTTTTCTCTTTGACTACTAA 10080 29 96.6 31 ............................T TAGGCGACTGAGATGCATAGCCATCACTTTT 10140 29 100.0 31 ............................. CTAGATAACCACTTATCAAACACAAATACAT 10200 29 100.0 31 ............................. ATTCCAAAGAAAAACCCAATGGAATCAAAAG 10260 29 100.0 31 ............................. ACCGCATTACCTTGCGATTGATCAAGTGGAA 10320 29 96.6 31 ............................C TGAGCACCAGACAACTCCCCAGTAATTTCAG 10380 29 100.0 31 ............................. ATCACCATCATCGGTGGCGTTAGCTTCAGTC 10440 29 96.6 31 ............................T GCATCAAGTGAAGTACAAGAAGATACAGGTG 10500 29 96.6 31 ............................T AATCGCCCTTATGAGGTTGATACTTCTCAAA 10560 29 100.0 31 ............................. TCTTGGATGACTTTGTTAGAAAAGCATCGTC 10620 29 100.0 31 ............................. ATAAGCTCAAGCGAGTTGACCTTAGATAAAT 10680 29 96.6 31 ............................C TAATTACTAACCTTTAAGGAGAGCAGTCATG 10740 29 96.6 31 ............................T ATATGTTTATACGGTTAATAAATCAGTACAA 10800 29 100.0 31 ............................. AGTCTCGGTAAACGTAGAGATAGAGATACGC 10860 29 96.6 31 ............................T GTTAGGAGCCAAAAACTCACTTAAGATAGCC 10920 29 100.0 31 ............................. TAGTCGCTTGCGGTACGATCTTAGCTGCACC 10980 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 21 29 98.7 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AATCAGTTTTAAGGGGCTTTGTTGCACAAACCTATCTCTAAAGGCTTATTCCACAATATAATTTTGAGATGAATAAGCCTACACCTAAAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6558-3745 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHYF01000077.1 Acinetobacter baumannii strain AB_363 NODE_77_length_6660_cov_56.930773, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6557 29 96.6 31 ............................T GCAGTTCTGCGTTACGTGTTTCAGGATGCAT 6497 29 96.6 31 ............................T AAAGGGCGTGGCAAAGGCATTACGTGTGAAA 6437 29 96.6 31 ............................C TCTACACCTTCGCGAATAAGTACGCAGGGCT 6377 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 6317 29 96.6 31 ............................T GAGCAGGTCGGTTATTCTGAACCTGAAAATA 6257 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 6197 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 6137 29 100.0 31 ............................. GTCAGGCCCTAGCTTTTGAGTCACACTTTCG 6077 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 6017 29 100.0 31 ............................. CAAGCGATAACTTGCCGCCAATCACTGTTTA 5957 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 5897 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 5837 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 5777 29 96.6 31 ............................T GTTGGGCCAATAATCAGAGTGTGGCCTACAT 5717 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 5657 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 5597 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 5537 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 5477 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 5417 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 5357 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 5297 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 5237 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 5177 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 5117 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 5057 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 4997 29 96.6 31 ............................C AGTAACAGCAAAAACAAAAACAGTAACTAAA 4937 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 4877 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 4817 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 4757 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 4697 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 4637 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 4577 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 4516 28 72.4 0 ....................AG.GTTCT- - Deletion [4489] 4489 24 79.3 31 -----.......................G TCATCAATACGCTTCAGTGCATCAATGTCAT 4434 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 4374 29 96.6 31 ............................T AACAGAAGCGCAAAAAAAAGCGTATATCATT 4314 29 96.6 31 ............................T TCACCTGCAAAGTAAATCGCATAAATCTCGC 4254 29 100.0 31 ............................. ATTTCAGCGTCAATAGTCTCAATATGATCGA 4194 29 100.0 31 ............................. TCCCGGAAGGCTTGGCTAAACTTGTACTTTT 4134 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 4074 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 4014 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 3954 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 3894 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 3833 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 3773 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 48 29 97.0 30 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACCTCATACCCAAGTTGTAACCTAAATTTTAGCAACTTAGGAAAACTTTACCTTCAAAGGCTTTATGCAACAAAGCCGTTTTAAGGTGTAACTGGTGCAATC # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGGGAGTTGAACAAATATTTTAAATTATTGATTTTATAGTTACTTTTTCAACATATAACATGCTGGTATAACGCATGTATAACATTTAATTTTGATTAAGTATGATTAACAACAGTTTGTTTTTTGTTCAAGTCCGACTGTAGGACTTGAACTCAGGAGTTAATATAAATCATTTTAAACAACGCTCAAATGACTTTAAGTAAGTTTCAAAAATAGCCATAGATCATAAAAAATACTAAGATGGAATTAAAAAGGGGCAAAGTTTATGTGTGCTAACTATGAACCAATATCAAAAGACCGGGTACACCTATTAAATCTACTCGAACCTACCTTCGACTATAAAGCGGATGTTTATCCAGGTTATGACTGCCCTCTTATTTTTTCAAAAGATGGCCATATAGAATGGCGCCAAGTTAAGTTTGGCATGATTCCGCCATGGAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //