Array 1 1110595-1107851 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHHX01000003.1 Streptococcus uberis strain NCTC4673, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1110594 36 100.0 30 .................................... ACTGGAATTGATTGCAATCTACGCATTTCT 1110528 36 100.0 30 .................................... TAAAATAAGGGTTCGCTAAAAAATAAATGC 1110462 36 100.0 30 .................................... TCACCACAAACACAAACAATATTGCAACAA 1110396 36 100.0 31 .................................... TGGGGTTGCAAGGTCAGTCGACGACGCTTTA 1110329 36 100.0 30 .................................... TTAATATTAATTTTCAACTCAATGTCATCA 1110263 36 100.0 30 .................................... CAGTTTTTATTGGCGCAGATACGTATTTTA 1110197 36 100.0 30 .................................... AAAAGAGTCAGGGTATGTTGCCATTGCCAG 1110131 36 100.0 30 .................................... GTACCAGCTGGACAGTATTTATGGACTCGG 1110065 36 100.0 30 .................................... TAAGACGAAAAGCTAACTCTGGATCTTCAA 1109999 36 100.0 30 .................................... TCGATGATGGTTACTTACTTTGTTGCAAGT 1109933 36 100.0 30 .................................... TGCAAAATGCAAATGATTTTGACAACGGTA 1109867 36 100.0 30 .................................... AAAGAAGTACTTCAAAAAATCAACGAATTT 1109801 36 100.0 31 .................................... TCAAAGCTTGGATTAAATGGCACGATGACCA 1109734 36 100.0 30 .................................... CACCGAGTAAGCCTGTAGAGCGTCTTGTGG 1109668 36 100.0 30 .................................... GCATGCCTATAAAAGAAGTAGGGGGTGATG 1109602 36 100.0 30 .................................... CATTTGTTTCCAACTTAGCAAATTGGCTCT 1109536 36 100.0 30 .................................... ACAGTAACCCAGATAACCCAAACCATTGGC 1109470 36 100.0 30 .................................... TGTTTGGAATTACTCCAGTACCGTATGTGC 1109404 36 100.0 30 .................................... TAGCGCCTTTAAGTGCTTCTCGCATCGCGG 1109338 36 100.0 30 .................................... AAAGTATTGACATTGTATGGTACATGTACT 1109272 36 100.0 30 .................................... CCAATCTCACGAGGTCGACCATTTAACTCC 1109206 36 100.0 30 .................................... TTAAAACAGAACAAGTCAAGTTAGTGCTTT 1109140 36 100.0 30 .................................... CAACTGCTCAATCAATGATCAACCAGACAG 1109074 36 100.0 30 .................................... GCGTGGGGTTTATTACAATAAACGAAAAGG 1109008 36 100.0 30 .................................... AAGGGACATTAGGTATCTTGCCAACCTACA 1108942 36 100.0 30 .................................... ATAGTACCAGTTACACCATACCAGTTATAA 1108876 36 100.0 30 .................................... TGGCCAATAAACTGCTTACCTACGCTATCA 1108810 36 100.0 31 .................................... TCATCACCCCCTACTTCTTTTATAGGCATGC 1108743 36 100.0 30 .................................... CTGTTATCTCAAATGGTTGATTTGCTAGAT 1108677 36 100.0 30 .................................... AATCCTCTTTTAACTGTTCGTGAGTGTCCT 1108611 36 100.0 30 .................................... TAATTGGAGTGGTTGCTTATATCGGAAATC 1108545 36 100.0 30 .................................... TAGTTACCGTCTATACCTTCTCCAATAATT 1108479 36 100.0 30 .................................... ACCCGCTTTTAAGCGCAGCATCACGGATAG 1108413 36 100.0 30 .................................... TTTACCAAGACCGATAGAACTAATCAGGTT 1108347 36 100.0 30 .................................... TCGGTTGTTTTAATTAATCCATCTTCTGGA 1108281 36 100.0 30 .................................... AACCCCTTTATTATAGGGTTTTTAAAAGTA 1108215 36 97.2 30 T................................... ATATACCTTATGCTCCGCATTTGTATTTTA 1108149 36 100.0 30 .................................... TTAGGCCTCCTTCTTTAAATTAGTGTTTCA 1108083 36 100.0 30 .................................... TTTTGACCATTTCCTTGCAGTTAGCAGCAT 1108017 36 100.0 30 .................................... TGGGTGGATTACGATTGACGAAGTTCCCGA 1107951 36 100.0 30 .................................... AAGATACCTTTGATAAAATTACTCGTTCGT 1107885 35 91.7 0 ....................-.............TT | ========== ====== ====== ====== ==================================== =============================== ================== 42 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TAAGAATTTGGATGATTATCTAAGTCATAAACAATTTATTGAGATATGTCAGTTTTTAAACGATATATGTCAAAAATATTCTCATTTTTTCTGTATTGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTATCCGACTAATGATTATCCAAACGAAGACCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGTTTGTCTGTAAGAGATATGGTAACTATCAAAATTTTAAACATGCTTTATCATTTTAATGATAAAGTAACTTTTGAAATTCCACATGTGAATTCGATGGAAATCAAATACCTAATTAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGAGAGTATAAAAATTTAATTTGAG # Right flank : AGTATTCTTAAGTAGGTTTGGTAACTGTTGATTTTTAAATAATTCCATATAACACCAAGAAAACAGCCACTTTCTAGAGTGGCTGCTTTTTACTTACTTTTCATATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAATCTATTGTTTAAAATGTATAATTATTAATAAAATAGCCTTAAAAATGTATATCGAGAAATACGTTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAGGCTTTTAAAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //