Array 1 137462-136334 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLFW01000001.1 Escherichia coli strain MOD1-EC5745 MOD1-EC5745_1_length_387503_cov_42.5678, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 137461 29 100.0 32 ............................. GTCTGCTCACCGGGCATAGTAATCAATGGGAT 137400 29 100.0 32 ............................. CGATTTGGTCGTCTTCACCGTATCGCTCGTTG 137339 29 100.0 32 ............................. TATTGGCAAGGTGAAGTAATACCTGGCGAAAT 137278 29 100.0 32 ............................. TCGAGGGCCGAGGATTACGGCGATCGGGTTGT 137217 29 100.0 32 ............................. ACCGCGCAGGGGTTCGTTCAGTCAAAAACGCC 137156 29 100.0 32 ............................. CGGTTAACATATTGAAATATTTGCTAAAAAAA 137095 29 96.6 32 .................A........... ACGCGGTGGAACGCTACGTCGCCGGGTTATGC 137034 29 100.0 32 ............................. TGGCCGAGCGGTGCCGACGGTTCAAACCGGAT 136973 29 100.0 32 ............................. AAAAAGCAGCGCAGGACGCAGCAATTAAAAAA 136912 29 100.0 32 ............................. TTACGCGGCCCAATATACGAATGGATTTGTGA 136851 29 100.0 32 ............................. CGATGCCACCGATTTACCCGATTTTTGCCAGT 136790 29 100.0 32 ............................. GATTAAAGAGAACTACCCGAATTGGCGCATCA 136729 29 100.0 32 ............................. ATGATGCAACCGTCGCAGGACGACCTGCGCAC 136668 29 100.0 33 ............................. CCGATTTTATGCATGGCGGTTGATAGTGGCGGC 136606 29 100.0 32 ............................. GCCACGATCGGCGATCTGGTTTACGCGTTGCT 136545 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 136484 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 136423 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 136362 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 164537-163164 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLFW01000001.1 Escherichia coli strain MOD1-EC5745 MOD1-EC5745_1_length_387503_cov_42.5678, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 164536 29 100.0 32 ............................. AGAGCACCAGCCATCACTGAGCGGTTTGCCCT 164475 29 100.0 32 ............................. GCGTTTACTCATTCATCCAGCGATTTCGGCAA 164414 29 100.0 32 ............................. CCAGGCCACGGCGCTAACGAGGCGCTGGACCT 164353 29 100.0 32 ............................. CAGAAGCAGCCTCGCAATCCAGAGACCGGTCA 164292 29 96.6 32 .........A................... ACGCAACCGGGTTTATGCTCGCTGGTGGAATG 164231 29 100.0 32 ............................. CGTAAAAGTTCCAGTAAGTTTTCTGATAGTCC 164170 29 96.6 32 ............T................ AAAGAACTCATTCAGACAGGCCATTTGTCGCC 164109 29 100.0 32 ............................. TGCGTGTCGGGCTGATTCGTCAGCTTCTTGGT 164048 29 100.0 32 ............................. GAACGCTGTTCATTAACATATATTTCCACCTT 163987 29 100.0 32 ............................. ATTAATCATAAAACCGGAAGACGTCGTGAAGC 163926 29 100.0 32 ............................. CTCTTTGAAAATGCAATGCCCCGCGCGGCCAT 163865 29 100.0 32 ............................. AAACTCCGTGGTGTGCCGCGTTCACCGGAGCT 163804 29 100.0 32 ............................. GCTGGCACAACTTATCAGCCCGGGGACACGGT 163743 29 100.0 32 ............................. CAGTAAACGTCCGAGCGTTTCCGCGTTCGCGG 163682 29 100.0 32 ............................. AGGAATAAAAAATGACTACTATTAAATCTGCT 163621 29 100.0 32 ............................. ATACCCGGCAGCAATTTACTCAACATGGCCCT 163560 29 100.0 32 ............................. AACACCTACGCTAACGAGCAGTGGCTGAAAGG 163499 29 100.0 32 ............................. GTGAGCCATTACAGCGTGTACAGGCGGTCACG 163438 29 100.0 32 ............................. TTTTTGTACGTCATGATGCGTCTCCATGTAGC 163377 29 100.0 33 ............................. GGCGTCATCATCAAACAGGGCGTCTAACAGCGA 163315 29 100.0 33 ............................. CCCAGCCTGGCTTTCGGGTAAATCACCTAAAAC 163253 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 163192 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAATAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //