Array 1 540120-540405 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032668.1 Listeria monocytogenes strain 52873 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 540120 29 96.6 34 ..............A.............. TTTCTTATTTTTATTGATAATTGATCCAGTAAAA 540183 29 100.0 35 ............................. AAGAATGTTTTATACGAGGAAAAAATACTTGATAT 540247 29 96.6 36 ..............A.............. TCGACATAACACATATATTTAAAATCATTAAAACTA 540312 29 100.0 36 ............................. GTTTTAGCCCGTGCTGTTAAAAAACTGACTATCAGT 540377 29 75.9 0 A.....AG.......CA.A....A..... | ========== ====== ====== ====== ============================= ==================================== ================== 5 29 93.8 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGCAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGGAAGGGAAGTTTGGCGGTGTTTGCTTGGGAAAATCTTCCGGAGAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCTCCTCCATACACAACTCCACCACCATCCATCAAAATAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTTTTATTTTTCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2669067-2667380 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032668.1 Listeria monocytogenes strain 52873 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2669066 36 100.0 30 .................................... TCGACTTCCCTAACATCCTGCCAGGCGTAT 2669000 36 100.0 30 .................................... TAAAAAGGCTGTTTTCGATTGATTTATGTT 2668934 36 100.0 30 .................................... TGATGCCTGCTGACATCCCCGCCCCTGCCT 2668868 36 100.0 30 .................................... AGTTTCTTATTGTGTATTTCTTGATACTCC 2668802 36 100.0 30 .................................... CCAAATTTCAAAATACGTTATTTCCATCGA 2668736 36 100.0 30 .................................... AATGAAAGAACAACAGATTGTAAAAGAATA 2668670 36 100.0 30 .................................... AACGCCCGGAAAAAAATATTGCGTTCATCC 2668604 36 100.0 30 .................................... GGAATCCGGAAACGATGAAAGAAGTCAATG 2668538 36 100.0 30 .................................... TGCTTTAACTGTAGCCTTTACACTACTTTT 2668472 36 100.0 30 .................................... GCGGGAATTTTCATTAAGATACTCCACCTT 2668406 36 100.0 30 .................................... TTTATCGCCGAAAGTTATTTGCGAGCTTTC 2668340 36 100.0 30 .................................... TAATGTTAAACCAGACACGTCAACTAGACA 2668274 36 100.0 30 .................................... CTTTATGCTCACTAAATATTTTTTTATCCT 2668208 36 100.0 30 .................................... TTTAAATTATGTGGGTTTAATGAAAAAATT 2668142 36 100.0 30 .................................... AAAGATGTTATTTGGGAGTCGACAACTTCG 2668076 36 100.0 30 .................................... AAACAACAAGCAAATTCGTGCGACTATTGA 2668010 36 100.0 30 .................................... AACAAAAAGCAAGTTTTCTCCGTTAAAATC 2667944 36 100.0 30 .................................... TTCGTCATCACTTTCATCAGCTTTTAGTTT 2667878 36 100.0 30 .................................... TAGTTAGAACCCTGCTCGACACCTGCGTTA 2667812 36 100.0 30 .................................... GGGATTTTCCGTTTTTATATAAATAAGAGT 2667746 36 100.0 30 .................................... ATTTAGCGCATACAGATCTTCTTTACAACG 2667680 36 100.0 30 .................................... AATTGTAAGTTCCATTTCGTCAGGGGTCAG 2667614 36 100.0 30 .................................... TACAAAGTGAAGGATGATGAAAATGGAGTT 2667548 36 100.0 30 .................................... AATCAATTCAACTATAAGGATTTAATGTCC 2667482 36 100.0 28 .................................... GAATATTCTTCCCCCATCACTAACAGGT 2667418 36 83.3 0 ............CA.....C.....A.A.......G | C,A,T [2667383,2667386,2667391] ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.4 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTTATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //