Array 1 1085434-1086855 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047191.1 Streptococcus thermophilus strain EU01 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1085434 36 100.0 30 .................................... TTTCATTGAAAACTACAAGGATATTAATCT 1085500 36 100.0 30 .................................... CATCATGTCGCTTGTGAAAGTTGTTTTTAA 1085566 36 100.0 30 .................................... GAATGCATCCCATGTTTTAGCTCTAGCTTT 1085632 36 100.0 30 .................................... AAAACCAAGTCGAGGCTGGTGGCTTGGTAA 1085698 36 100.0 30 .................................... GTTCGTCTTTAAGAGCTTGAAAGGCTGCTA 1085764 36 100.0 30 .................................... CTATTTGCAGACAAAGAATTCAGTAAATCA 1085830 36 100.0 30 .................................... CGATGGAAATGATGGATTGCCTGGCAAAGA 1085896 36 100.0 30 .................................... AATATGTTCAAGGTGCTAGAACCGAAAACA 1085962 36 100.0 30 .................................... AGACGTCCATTTTGCTATCTAGTTCAGGTA 1086028 36 100.0 30 .................................... AACGGTTAAATGGCATCTAACATTTAACTC 1086094 36 100.0 30 .................................... ATTAGATGCTATTATCACCGATGTTAAAAT 1086160 36 100.0 30 .................................... AGTTAAAGCTGATGCAGGTGTATTGACTGG 1086226 36 100.0 30 .................................... ACCAGTCCACAATATATTAATTGAATTTGA 1086292 36 100.0 30 .................................... AACGGTTAATTTCGATATTCCAAAGAGTTA 1086358 36 100.0 30 .................................... TCTGCCGCCCCGGGAAACCCAAGTGGTCAG 1086424 36 100.0 30 .................................... CAAACCATAACACTGACGACAATTCCAAGA 1086490 36 100.0 30 .................................... TAGAGGTAATGACGGACTACCAGGTAAGGA 1086556 36 100.0 30 .................................... AGTTGTGACTTCGCTTTCGCTTGGCATCCG 1086622 36 100.0 30 .................................... TTTCCAATGCCGTGATGGTTTTCGTCAGGA 1086688 36 100.0 30 .................................... CAAGGTATACGGCATCCCTGATAACGTAGT 1086754 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 1086820 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1578029-1577776 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047191.1 Streptococcus thermophilus strain EU01 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 1578028 30 100.0 42 .............................. GGAAACGCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 1577956 30 100.0 46 .............................. GGAAACTCAAAATATGTTATTACCTTGTATTTCATAATTCAATTAA 1577880 30 96.7 45 ........................A..... GGAAACCCACTTGCTGTGTACATCCTACCAGTTCCGCCTATGATG 1577805 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 99.2 45 GATATAAACCTAATTACCTCGAGAGGGGAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGACTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : TTTTTTGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 1827553-1824944 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP047191.1 Streptococcus thermophilus strain EU01 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1827552 36 100.0 30 .................................... TTTGAGGGAATCAACATCACTGTATTCTGT 1827486 36 100.0 30 .................................... TTCCGTACAGAATTAAACCGAGATGGTACT 1827420 36 100.0 30 .................................... AAACATCATGGTCAGCCTCTGGTACTTCAA 1827354 36 100.0 30 .................................... TCCCGGCGTATATACTGGCTCGATTGTTTC 1827288 36 100.0 30 .................................... GAAAGATCACAAAAAAGAACTTTCATCTAT 1827222 36 100.0 30 .................................... CATTACGCCAAGGTGGTGGTTATTGTGAGT 1827156 36 100.0 30 .................................... GATGCTATGAGGGACGGTGTCGATAAATTC 1827090 36 100.0 30 .................................... TCTACTTATTATGTAAAATTGAGACGAGCT 1827024 36 100.0 29 .................................... ATGTAACTCGTGAGAAACACTACTCAAAG 1826959 36 100.0 30 .................................... TAATGTATATTTCTCAAGGTGTGATTCATA 1826893 36 100.0 30 .................................... CAAAACCCACAAGATTATCGATGGTCTAAG 1826827 36 100.0 30 .................................... TTGTCAATACCGACAGCCATACCTTGGCCG 1826761 36 100.0 30 .................................... TATATTAAGCTGACTGGACCAAATGCTTTT 1826695 36 100.0 30 .................................... TAGTTCGTAGTTAGTACAGTAGGTTTCTAC 1826629 36 100.0 30 .................................... TTAGTTTCGACATTCCAACGGATTCGAGCG 1826563 36 100.0 30 .................................... GAGCAAGCTGAAGGTAGCTTCACAATCCTT 1826497 36 100.0 30 .................................... AGAAAGAAAGGAAGTAAATGATATGGCATA 1826431 36 100.0 30 .................................... ATTCATCCATCATTTTCTGTTCATGCTCTT 1826365 36 100.0 30 .................................... ATGATTTAAACAAAGATGACGTTTTATATA 1826299 36 100.0 30 .................................... CTTACCACGTTTTCTATGTTTCTCAACTTG 1826233 36 100.0 30 .................................... ATTCCTTTTGCAGTGTTCCAAACAGCCATA 1826167 36 100.0 30 .................................... TTAACAAGATTGAACTTAAAAAGGAAACAG 1826101 36 100.0 30 .................................... GTTCCAACTCCCAATAAGAAAGCAGGTACT 1826035 36 100.0 30 .................................... AAGAAGGTCCATATTGACGACGGTGAAGCT 1825969 36 100.0 30 .................................... TGTTCGTTAGTAGTTCCAAGTCCTGTCTTC 1825903 36 100.0 30 .................................... TGAATAGCAAAGAAAAGTGAGGCTTTATGA 1825837 36 100.0 30 .................................... CGTGCACCGTTGACAAGTGTCAAATTATCG 1825771 36 100.0 30 .................................... GTATGTGTAGCATCACCTATTTTTCTATCA 1825705 36 100.0 30 .................................... AAAAAGGCTGGCGCAAAAAAATACATATTG 1825639 36 100.0 30 .................................... TCAATTTTAAATTCAGATTTTGAAGAAGCA 1825573 36 100.0 30 .................................... ATCAAGGAATGTAGCAGCATTTTTGACATG 1825507 36 100.0 30 .................................... AATCTCTTAGGGGTTCAGGAAGTGAAAACC 1825441 36 100.0 30 .................................... ATCCTTGTGTTCTTTCATTGTTGTATACCG 1825375 36 100.0 30 .................................... AGTTTGTGGCTGAGTGGATAAAAAAATATA 1825309 36 100.0 30 .................................... GTTCAAAATCGCAACATTTTTAGCACCTTC 1825243 36 100.0 30 .................................... AATCGCTAAAGAAGCAGTTAAAACTTTCGG 1825177 36 100.0 30 .................................... AATACGATTCATTGCAAGAATATGTAAACG 1825111 36 100.0 30 .................................... CGTACGGGTCGTGATTGGAACATGCCTACT 1825045 36 100.0 30 .................................... GGGCAATGATCGGTAAAGGTTTGGCTGATG 1824979 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 40 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCGGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTCGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //