Array 1 772239-771684 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT964854.1 Ottowia sp. Marseille-P4747, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================== ================== 772238 36 100.0 35 .................................... CAGCAGGCGAAAGTCATAGTCATACTCCGTGGATG 772167 36 100.0 32 .................................... TAAATACTGCCATTGTTGTGTCCTTTCAAATG 772099 36 100.0 33 .................................... AGTCCAGGCTTTCGGGGTTGGTGTCGAGTTCGA 772030 36 100.0 35 .................................... AAGAACATGAACGCGAAGTCCACATCCTCGAGCTT 771959 36 97.2 32 ........................G........... GTCAACGATCTCCTGCATACGCCGGATTGTCT 771891 36 100.0 66 .................................... CGGGGCGGCATCCTTGGGTTGCCAGGTTGCCAGGTTGCCAGGTTGCCAGGTTGCCAGGTTGTCAGG 771789 36 100.0 33 .................................... ACAGCGTGGTAAGCAGTGTTGAAAGCGACGGAA 771720 36 94.4 0 .................................TC. | G [771689] ========== ====== ====== ====== ==================================== ================================================================== ================== 8 36 99.0 38 GTTTCAGGCCACCCCTGATTTCAAAGGGATTAAGAC # Left flank : CCGGCGGCATCCACTGGAGCGGCCTGCCCGAAACCTGGCAAGACGACCCCGCCCTGCTTCCGGGCGACGAAAGCGGCGACGGAAACATCAACGAAAACGGCAACCCGGCCGGCCCGGGCGCTGCCGACGCCATCAGCAGCCTTGACGGCACAGACGAACCCGGCGCCCCGTCAGCCCCCTCAAACCGCAAACCCTGGACTCTCATCTGAAAGCCTGCCGGACAAGCGCCCTTCACATCAAAAACAGGAGCGAATTCATGGGGTCGAAATGCCGCCTCTCGTGCATTCCACTAGGACATCCTGCTATCAATCAAGGAGCAAAAACGCGCATTCCACCCACAGATACCCTGCGCCCGGCCCAGCTGGGGGCCAAAACCAGGCGAAAATACCCCCCGCCAAAAGCCTGAAACGACGCCTGAAGCGACATCTCCCCAACGACCTGTGACCGTCCATAAAGCCCTCTGCAAGCTGTTGTCCCGCAACGGATTTCAGAGGCGTACG # Right flank : AGCAACAGCCGCTGCTTTGGCAGCAAGATTGGGTAAATGCTGCGTAAATGAAGAAAAGGCTGTTTCCGGTTTTCGTTGCCAGTGCTTTGGGTTTGGGCGGAAACTGTTTGCCGGAAATTTGGGCTTATAAGAGCCTGTTCATGATCAGGCCGTGAGAGGCGAAAGAATGGATCGGGATGGGCGGCAAGGCGCAAGCCGTAGGCAGCTCTCGTGGCCCGGCGAGGATTTGCAACGCGGCAGAGCGCCTGAGGCCGCGCTTTTCGCGTCTACGGACAGAATGTGAGCGGGTTCTCAGCCATTTGCTTTTCGCCATGCAACGTTTGGATGACCTTCTTTTTGCCCAGGGTTTTGGCACGCGCCGTCAGTGCGCGGGGCTGATTGCGCAGGGGCTGGTGCAAGTGCAAGGCAGCGTTTGCACTGATCCGGCGGCTGTTTTTCCGCCGCAGGGCCTGCGCATTGCCGTGCAGGGGCAGCCTTGGGAGTGCCGCAGTCCTGCGTAT # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGGCCACCCCTGATTTCAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 1480077-1482095 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT964854.1 Ottowia sp. Marseille-P4747, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1480077 36 100.0 30 .................................... AGAACGTTCCTTCTTGCGTGGGTGTTCCCA 1480143 36 100.0 32 .................................... GTTATACACCTGACACATCTCCGCAACTGTGG 1480211 36 100.0 30 .................................... CGGGCAGCGCGCCTAAAAACGCATCCGCGC 1480277 36 100.0 30 .................................... ATGCCGTAGCTCATGCAAAAGCCTTGATTA 1480343 36 100.0 30 .................................... CTAGAGCCAATGCTTCGCCGCTCATGCGGC 1480409 36 100.0 30 .................................... CGCTTTGCGGAGCGTGTGCATTGCCAGCTA 1480475 36 100.0 30 .................................... TTCAGCTAGAGTTCTATTGCCTAGTGCCGT 1480541 36 100.0 30 .................................... CCGGGGGCACTTATAACGTGCCAGCGGATG 1480607 36 100.0 31 .................................... GAACCTGCCGTTATAGAAAACGGGGCGTTCG 1480674 36 100.0 31 .................................... TGCGCGCTGTAGCTGATGCTCTTCGCGCTCC 1480741 36 100.0 29 .................................... GCCGCAAACAAGGCTGCCTCTTTGCACAG 1480806 36 100.0 30 .................................... CATCGACGCCGCCGACTGGCCGCTGGCCTT 1480872 36 100.0 30 .................................... ACACATGCCGACGATCTGCTGCACGCGGCG 1480938 36 100.0 30 .................................... GCAGCGGCTCCGCAGCGCTACCTAGTGGAT 1481004 36 100.0 30 .................................... CAGACGGCAAATGGGGCGCTGCCGTATCGT 1481070 36 100.0 30 .................................... GTTAGTCATGCACAATACAGCTATGTTGAT 1481136 36 100.0 30 .................................... GCAGGCACAAACCATCAACGACAGGGTCAA 1481202 36 100.0 30 .................................... TACAGCCAGCGGCGTTTCGGCATTCTCGCT 1481268 36 100.0 30 .................................... CTGCCGCGCGATGCACAGGCGTACTTGTGC 1481334 36 100.0 30 .................................... TAATTACATGCGGAATCCTCAGAGCCGCCT 1481400 36 100.0 30 .................................... CTTCCACGTTGGATGCGCCAACATCGATAA 1481466 36 100.0 30 .................................... CTCTAATGCCATCTTTATATTGCTTTTTGT 1481532 36 100.0 30 .................................... GTTGCCCGTGCCACATTACTTTTCCCCTCA 1481598 36 100.0 30 .................................... CCCTTGCCCGCCCTGCCCGCTACCTAGGTT 1481664 36 100.0 30 .................................... GCTGCAAACGATTCATGTTGTGCGCACGCA 1481730 36 100.0 30 .................................... CGGAAACAAAACGGTCATGATTGTTGCGAT 1481796 36 100.0 30 .................................... CCATCCTTTGGCTTCTTGCCCATGATTCCG 1481862 36 100.0 30 .................................... TGTAGCCGTTGCAATAGGCTTCATCTTCAT 1481928 36 100.0 30 .................................... TCGCATCTGTAACCTACCGGCGTTTCGTAG 1481994 36 100.0 30 .................................... CCCGCCACCGACCGATCGCCATTTGTGCAT 1482060 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 31 36 100.0 30 GTTCCGGATAGAGCGCATTTCCCAGTGATCTAAAAT # Left flank : CCCCCGCGCCCGCATGAAAGAAGCCATGGGAAACCTTGAGCTGGATACCCAGCTGCCCGCCTCCTTGCTGGCTCTGCAGCAAGACCGTTTGCGCCAAAGCCATTGCGATTTGCTGCCCGCAGAGCAGACGGCGCCCATGACACGCATCCAAATCGCCCGCGACATGACCATGGCCGCCACACTGGCCCGCCTGGCTGAACAAGCGCCCTCCAGCCAAACAGTCATCCTCATCACAGGCAACGGGCACACCCACCGCGCCCTGGGCGTCCCACGCTTCTTGCCCCAACACCTTCTCACACGGGTTCTTTCCGCACGCGCCCGTTCGGCTGCGGGCAAGCCGCACTCGCAAGAAGACCCCGCCGAAACATCCGCCCTGGCTCCCTCGGACATTATCTGGCTCACTTCGCCCATTCCGCCGCTTGATTACTGCGGGAAACTGCAAAAACAGATTACCGGAAGCAAATAAATCTTGGTATATATTGGCTGCTGCTTTTGCTGGA # Right flank : TTCCAGAACACCTAACTCCTTGTCGCCAAACACCTTTTAGGTGCTGCGAGGTATAAAAAAGCGTTGTTCAACATCAGAAGAGATCGAACTGATCTGGTGTTTTCGGTGGGGCTTGTCGCATCTTGCTGTGGAAGGTGATGATGCGCTCATACTGTTTGTCCGTGAATTGAAGTAGGTTGACCTTGCCGCCCGCGGGAAGGATGGACTCAACGCGTTTTGCGTAGGTGTCAATTTGAGTCTGGCTTGTGCAAAAGCGCATGTAAACGCTGAGCTGGCTCATTTCAAAACCCATGTCCAACAAGGCCTTGCGAAAGTCTGTGGCGGCCTTCCGCTCGACTTTTTCCAGCACGGGTAGATCGAACATCACCAGTATCCACATCAGCCTGTACCCGGAAAGCATGGTGAATCCATCATGAAGGGCGCAGGTTGCCTGTCAGAGATAGCGGCAGACCGGGCAAGGGCAAGTCCAACTTTTCTCTTTGACCAACGTAAACCTGTGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGATAGAGCGCATTTCCCAGTGATCTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 1926531-1926367 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT964854.1 Ottowia sp. Marseille-P4747, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1926530 32 100.0 33 ................................ CTCTTTTGCTTCGTTTTTCATGGCGCATATCGC 1926465 32 100.0 35 ................................ ATAAACACCAACATACACCGCGCCCGCATTTTCAG 1926398 32 87.5 0 ..............A...........AA...A | ========== ====== ====== ====== ================================ =================================== ================== 3 32 95.8 34 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GAAAATTTTCATGTTGATATTGATTACTTATGACATTTCCTTTGAGGATCCGCAAGGCCCGGTCCGGCTGCGCAGGATAGCGAAATTGTGCCAAGATTATGGCGTGCGTGTGCAGTTCTCTGTTTTTGAATGTGATATATCGCCCGATCAATGGGTGAAGCTAAAAATCGGGTTGCTTGATGTTTTCAACCCAGCAGTTGACAGCTTGCGCTTCTACTATCTAGGCAGCAAATGGCGGGGCAAGGTAGAACATTATGGAGCTCGGCCAGCGGTGGACGTGTTTAGGAGCACGCTGATTATTTAGTGATCGCTGATGGCTTGCTCCCATGAAAACACTGGCAGGTTAGCGAACGCTTCGGTTTTTCAACTATTAAGACGAATTTCCGCAGTTTGTATGGTGCGAGGACGACCGCTATACTTCCCTAACTCCCTGGGAATCAGATAGGTCAGCGAAAATTAACTTCTAATTGTCTGATTTTTAAAGAGTTTTCAAGCAGGGA # Right flank : GAGAATCAAATGAACTAAATCTGCCTAAACGCGCGAGACTTTGGCGGCGGTATATTAAAAGTCGGCGATTCGATGGATAACTGACCGGATTTATAAAATAAAGCCGATTCGCTTTGAATCAATACCGTGCAATGAGCTGGGCGGCAAGATTTCGGCGGGCAAGGTCAGCGGAGCGATGAGATACAAGATCGTTGTCGTTATATTCGATAATTAAACGCTAGTATCTTCGAATGTTATTTTCTCTTTTTCCGCGTCTGCGTAAATTCAAAGCCAGTATGACGATGAATCTAGACAAGGATTTGGACTAAATCATTTCCAGGCTTCCGGAAATCTTTCTTCGTCATTTAAACAAGGCCGTTGTACCATTGGTTATTACCATTAAAAACTAATTTATTTCTGCTGCCGACGTTAGCGCGACATGGTGCATTCAGCCTGTATCTAAAAACAGGGGAAGTCAGGGCGTTGCAGACCAACCTGTTCATTGCGCCTTGAACGCTTGC # Questionable array : NO Score: 5.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //