Array 1 16623-15314 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWF01000021.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N32763 N32763_contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16622 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 16561 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 16500 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 16439 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 16378 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 16317 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 16256 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 16195 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 16134 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 16073 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 16012 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 15951 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 15890 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 15829 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 15768 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 15707 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 15646 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 15585 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 15524 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 15463 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 15402 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 15341 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 162414-161712 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYWF01000006.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N32763 N32763_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 162413 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 162351 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 162290 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 162229 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 162168 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 162107 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 162046 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 161985 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 161924 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 161863 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 161802 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 161741 29 96.6 0 ............T................ | A [161714] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //