Array 1 4275-3768 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKDG01000043.1 Acinetobacter baumannii strain TUM16645 sequence043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 4274 27 75.0 27 T...C.-....A......AG..G..... TTAATGCTTAGCATTGATTGATATGTG 4220 28 85.7 29 ...T.G.............G.......T ATAGGGCAATTCTGATCTTAAGTATTTAT C [4212] 4162 27 78.6 39 ....GC..C.AT...-............ GCCCTATTTTTCATTTTTCCTTCAAAAGTAATTTTGAAA G [4144] 4095 28 85.7 32 C..T......A.C............... CAGCGTTCTGCTTTACCGTTTACATATCGCGG 4035 28 92.9 32 ............CC.............. TTGCTTAGGCAAATGCACTGATTTTAAAGAAG 3975 28 100.0 32 ............................ TATCATGAACATTGTTCCTTGACCCACGGACA 3915 28 96.4 32 .........T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 3855 28 96.4 32 ...G........................ TGAGGGTGCCACACATTGGCAGGCTGGAGTGT 3795 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 9 28 90.1 32 GTTATTCATCGCATAGATGATTTAGAAA # Left flank : TGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTATTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGTTCTTACTCCTCACAAATAGTAGTGATCGGAGGTAGATCTAGGCCGTGTTGTAGAGTCGAGTATGACAAAAATTTAAAATGTTGTGCTATCATTTGGATAGTCCTTATTTAAGTAGTAATAGCTTTGAAAATGGACAAAAGCAGGTATGAAGTTTGGTCACGGAATACCTGCTTTTTTTTATGCCTTTTCATAAATTAAGATATATTTGTCCAAAATCCTTGTCAAACATTATTTTTATTTAAATAAAATTTTACTATCAATCTTATCTAAGTATTAAGGGTAGTGATTTTTTAAATGAATATTAAGTATTCCTAATTAAGATTTGTTATGATACAACTCTTACATAG # Right flank : ACATTCAAAGAGGCTCATCGAATCCAATCGAATTTTATCATCGCTCAGATGATTCAAAATTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCTGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGT # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-23] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9831-12980 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKDG01000043.1 Acinetobacter baumannii strain TUM16645 sequence043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9831 29 100.0 31 ............................. TAAGAAAGGGGGCGTTAAAGAAGTAACTCGA 9891 29 96.6 31 ............................T TATCCTGGTGATTCAAGCCCATATCTTGAAC 9951 29 100.0 31 ............................. TAGTCGCTTGCGGTACGATCTTAGCTGCACC 10011 29 100.0 31 ............................. AATCAGTTTTAAGGTGTAACTGGTGCAATCA 10071 29 96.6 31 ............................T GCAGTTCTGCGTTACGTGTTTCAGGATGCAT 10131 29 96.6 31 ............................T AAAGGGCGTGGCAAAGGCATTACGTGTGAAA 10191 29 96.6 31 ............................C TCTACACCTTCGCGAATAAGTACGCAGGGCT 10251 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 10311 29 96.6 31 ............................T GAGCAGGTCGGTTATTCTGAACCTGAAAATA 10371 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 10431 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 10491 29 100.0 31 ............................. GTCAGGCCCTAGCTTTTGAGTCACACTTTCG 10551 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 10611 29 100.0 31 ............................. CAAGCGATAACTTGCCGCCAATCACTGTTTA 10671 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 10731 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 10791 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 10851 29 96.6 31 ............................T GTTGGGCCAATAATCAGAGTGTGGCCTACAT 10911 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 10971 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 11031 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 11091 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 11151 29 96.6 31 ............................T CTACAGCAGCCGTCCAACGGTGTGTATCGAT 11211 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 11271 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 11331 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 11391 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 11451 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 11511 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 11571 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 11631 29 100.0 31 ............................. GAAGTACGAATCAATGTGAATGAATAACCAA 11691 29 96.6 31 ............................C AGTAACAGCAAAAACAAAAACAGTAACTAAA 11751 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 11811 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 11871 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 11931 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 11991 29 96.6 31 ............................G TATGTAGAGTTGAAATGTAGTCCTGCGAAGA 12051 29 100.0 31 ............................. CCACTTGTCTTGACAGCAACTATTGAATCCA 12111 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 12171 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 12231 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 12291 29 96.6 31 ............................T AACAGAAGCGCAAAAAAAAGCGTATATCATT 12351 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 12411 29 96.6 31 ............................T GAAAAACGTAACGCAGAACTACAAGCTGTTA 12471 29 96.6 31 ............................T TCCAATTCGCATAATGAGCACTGATGTTAAA 12531 29 100.0 31 ............................. AACGGTAAAGTCATTCCATTTGTACGTTTAT 12591 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 12651 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 12711 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 12771 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 12831 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 12892 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 12952 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 53 29 98.1 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGTCAATTGAACAAATATAATAATATACTGATTTATCTTAATTAATTTTTATAAAAAAATCCCAGTGTACATGACAGTGTACAAATTATATGTTGCTGGCCTATTTCCTTCGGGTTTGGTTGCTATATACGGAGTACAACTCATGTATTAAACACCTTACTGGCAATCCAGTAACACTACCCTACTCCACCACTTACACAGCATCACTTCGACATCTCGTCAACGCAATTTTGCGTTCGGCATTGTTTTCAAAAGTTTATCCAGAATTAGACGCACCTAAAACCCGATAAAACCCTATCAACTCTTATCATTAGCTCTTAATAAAACGTAGTCTTTTATCCAGGTAGCTACTACGAATTTCTCGTAGTAAGGCACTGTATTTGAAACATGGAAATGAGATTCCTTAAATTAGCGATAAACCTTGTTGTATATAGCTTCAA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.67, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19461-26218 **** Predicted by CRISPRDetect 2.4 *** >NZ_BKDG01000012.1 Acinetobacter baumannii strain TUM16645 sequence012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 19461 30 96.7 30 .............................C GTACTCAACACCTACATCCACGTTCTCGAA 19521 30 100.0 30 .............................. AAAACAGAATGCACAGTAGAGTAATAAAAG 19581 30 93.3 30 ............................GA CCGCATCCGAAATAGCCAAAATGCTAAACG 19641 30 93.3 30 ............................AT CAAAACGATTAAAGACCAAGAAAAGCATGA 19701 30 96.7 30 .............................C TCTTTTAACTACGGTATAACGATTTGTATC 19761 30 96.7 30 ............................A. AAACGGGCAGAAGTTTCAGGACCTGTGGAA 19821 30 100.0 30 .............................. TTGTGACAACTGGACGTTCATTTGTCACTC 19881 30 96.7 31 .............................T TATCGAACGCCTCATACGCGTTAGCTGCGTT 19942 30 100.0 30 .............................. ATACCAATTTACGAGCGCTTTTACTCTCAT 20002 30 100.0 30 .............................. TACCGTAACGTTTACTGGTAATCAGGTCTA 20062 30 96.7 32 ............................A. GAACCGCGTTTCACATGTAACAACTTATACTT 20124 30 93.3 30 ............................AT ATCGATTGTGATACGGTTGCCTGTACCGTA 20184 30 93.3 30 ............................GT AGCGGTCCCCAAAATTAACTTTGCAAATAT 20244 30 93.3 30 ............................GT CATTACCCCAAGAAATATAGTTATCATATT 20304 30 93.3 30 ............................GA TCCAAACAGCAAAACCGATGATACCTGCAA 20364 30 96.7 30 ............................A. CTGCTGGAATGATGCCAATTGAACAGATTC 20424 30 96.7 30 .............................C TAAAAGCATTGGTATATATAGCTCATAGAC 20484 30 96.7 30 .............................A ACCCAAACTCATTTTCAAGTATTGCTGCAG 20544 30 93.3 30 ............................AT TGTCTTAAGGATTGGGTCAAACGCTACGTG 20604 30 93.3 30 ............................GA TTTGGAACTTAACCGACAACGATGGTGAAT 20664 30 93.3 30 ............................AA TAAACCAAACCAATCTTGCTATTGCTGCTT 20724 30 96.7 30 ............................A. ACGGTCTAGGCGGCCAAGAACCACGCTTTA 20784 30 96.7 30 ............................C. TGCGCGTGATCGCCATAATGTTGTAAAAAT 20844 30 96.7 30 .............................C ATTCGCAAGCGGCTCATTCTAATTCTGGTA 20904 30 93.3 30 ............................AT GAACTACGTGAGATGGAGTTGGTGCACGTT 20964 30 100.0 30 .............................. CAACGGCTAGATGAAATTGAATGGATTATT 21024 30 93.3 31 ............................AA CATTGTATAGAACGCCAATTGGTGAGTTTAA 21085 30 93.3 31 ............................CA GGATTGATCATATTGAGACTATTGACGCTGA 21146 30 93.3 30 ............................CT ACTAAACCAAACCCCTCTTGTGTATTGGTT 21206 30 96.7 30 .............................T GTAATGATTTTTCCCAACACGTTCGAAATA 21266 30 93.3 30 ............................GA TACAAGTTTCAGTTTGTTCAGATTTTAAAA 21326 30 96.7 30 .............................A CTACTGCATTCATAAGAAATCTCACGCAAT 21386 30 93.3 30 ............................AC AAGACGCTTGAGGTCGGAAAGCATCACATC 21446 30 96.7 30 .............................C CTTGTAACGTTTAGTCATGGCTTCCTGCTT 21506 30 100.0 30 .............................. AATGTATCGTCTCAAGCAAAATCAGCTCAT 21566 30 93.3 30 ............................AC TTTAAGCGCAAACGAACAGCATCAAGATCA 21626 30 93.3 30 ............................CA ATGTGGTGCATCTGCAATAACTTGTTCAGC 21686 30 96.7 30 .............................T CAAGAAGAGTACGGGACAACTGAAAAATTC 21746 30 93.3 30 ............................AT TGTGCTTCAGTTAAGGCATGCGATTCTTCA 21806 30 93.3 30 ............................GT GTTGATATTGCTTCTGGTAGTGGTACTGTC 21866 30 93.3 30 ............................GC ATAAGCAATACTTCGCGCTGAATGAATCAC 21926 30 96.7 30 .............................T CAAAGATGGGTCAAAAAATTCAGTTTACCT 21986 30 93.3 30 ............................AT ATTGTCAGGGATCTCGATGATCAATTTAGC 22046 30 93.3 30 ............................CC TGCTTTGTTCCAGACAAGGAATTGGTCAGC 22106 30 93.3 30 ............................AT GAGTGAGTTTAAAGTCGGGGATTGGGTCAA 22166 30 93.3 30 ............................AT ATTCGAAAGTGTCGTTTTTCTCAATTCCTT 22226 30 93.3 30 ............................CC ATAGAAAACCGGATCAGCCCGCTGTGTAAA 22286 30 93.3 31 ............................CA GTAAGAACATTATAAATGTTCTTGATTTTTT 22347 30 93.3 30 ............................AT TAAAGGCGAATCAGAGCCACGTATCCATGA 22407 30 96.7 29 .............................T TTGCATTACGAGGTGCGGCATGACACTAA 22466 30 96.7 30 .............................C AGCCTTTTCACGCTCTGCTTTAGCAATAGC 22526 30 93.3 30 ............................GT CTTGCTCGCGATTATTCTCGATATTCGCCC 22586 30 96.7 30 .............................C AATCTTTATCGTCTCGAGAACTAGCAGAGA 22646 30 96.7 30 .............................T ACCCTTCACATTTAGACATGTGAAAAGCCA 22706 30 100.0 30 .............................. GCTACAGATCTTCATTATAGCCATTACGCC 22766 30 100.0 30 .............................. AACGTCAGATCTTTGCTGACATCGAGGGGC 22826 30 93.3 30 ............................AA CCTTCACCCGCAACAGTAGTTGCATTAGCT 22886 30 93.3 30 ............................CA GGCAAATACTCAGCAAAAACCAAAAGAAAT 22946 30 96.7 30 .............................T GCACTAAACGCTTAGTTACAGACCAACCTT 23006 30 100.0 30 .............................. GACAACATGTGTTGTAAAAAGTCCAATTCC 23066 30 96.7 30 .............................T TATGCACCTGACGAAATTTATTTTAACAAC 23126 30 96.7 30 .............................T AGCACCACGTGACCAAACTAACTGACGCTG 23186 30 96.7 30 ............................A. TGAGGATTCACACCTAGAAACTGGGCAGCT 23246 30 100.0 30 .............................. CTGCTTGAACAACATGAATTGCCCATTCAG 23306 30 93.3 30 ............................AA AAATATTGATACGATGGATTAACAACAGAA 23366 30 96.7 30 ............................A. AAGCGTCATGAATATTTGGTTTGGCTTGAA 23426 30 100.0 30 .............................. ATCATTAGTGCCTCTTCGGAAATCAACTTT 23486 30 93.3 30 ............................AA AGAGTATGTATTAGAGGGCTATGCACTTAC 23546 30 100.0 30 .............................. AAAATAATTAAATGGTCTATCACCGTCTTC 23606 30 96.7 30 ............................A. TAGATGCAGCACACAGCAATCAGGGCGCTC 23666 30 96.7 30 ............................A. GCAAAAGGAACGGCTGGCTAACGCCACTAT 23726 30 93.3 30 ............................AC ATTCCAGCAAACAACAGTGTAGATCCAATT 23786 30 96.7 31 .............................C TTTCACAAAAAATGATGGTTATTTTGAATGT 23847 30 93.3 30 ............................AA TAAACAGCATTTCATCAGTTGCGTAATAAA 23907 30 96.7 30 .............................C CAAAAGAGCAAGCAGAATTTAGTGCATGTA 23967 30 93.3 31 ............................CA CCAACCGACAATGTAGCATCGGCAACTAAAC 24028 30 96.7 30 .............................A TGACACGCTATCAAGTGACGGTGCAAATAA 24088 30 96.7 30 .............................A TGACACGCTATCAAGTGACGGTGCAAATAA 24148 30 100.0 30 .............................. ATCTCTCTTAGCTTTGTATTCAGGGTCTAA 24208 30 100.0 30 .............................. CTACAGATATAACTAATCAGTTAAATAACT 24268 30 96.7 30 .............................A TCCATTTTCTGATGGTGGCGCATTCTCTTC 24328 30 96.7 30 .............................C AAGCAAATCCCGATGATCCTACAGCACCTA 24388 30 93.3 30 ............................AC AAGTTAGAGCTATTAGAAAGAATTATTTAA 24448 30 96.7 30 .............................T TCGGGGTGGTTTTATTTTGCCTAAATTAAT 24508 30 96.7 30 .............................T GTATTGTTGGGTTTCTAGTTACCAGAGCAG 24568 30 100.0 30 .............................. ATTCAGTAGGTGCTAACTGGTATAACTTGA 24628 30 96.7 30 ............................C. TTGTTGGGTCTTGGTTGCGTAGTGGCCCCC 24688 30 96.7 31 .............................T ACTAGCCCATATGTCTAAACCGAATCCACGC 24749 30 96.7 30 .............................T GGTGTGATCATCAATACAGATGGGACAGGT 24809 30 96.7 30 ............................C. ATAGAAGATACAGAAGAAAATAATGCTATT 24869 30 93.3 30 ............................GT CAACCAAAGAACCCCAAGCAAATCGAGCAA 24929 30 93.3 30 ............................AT TATCTAAGCGTCCCATTAGAAAACCTTTAT 24989 30 96.7 30 .............................T TCAGATGAAACCATACGCACTAAATGCATT 25049 30 93.3 30 ............................AT GTAATCTTGGTATGGGAGGTGTAAAGCCAG 25109 30 100.0 30 .............................. TTGACCCATCTATTGATGCATCTGTAAATA 25169 30 96.7 30 ............................C. ACTGCTCCTAAAGCTCCGCCGACTGACATT 25229 30 93.3 30 ............................CC ACTGTAGTACGAGTAACGTTACCGACTAAA 25289 30 96.7 30 ............................A. TTGCCCGGATCACGACGATCATTAGAATAA 25349 30 96.7 30 .............................T GGAGTCATCAATAAGAAACAATCCATTTAA 25409 30 93.3 30 ............................AT CTAATCGATGGTGAAGATTTTGAACAAGAT 25469 30 100.0 30 .............................. TTACATGCCCAATTGGTTGGCGCATGTCAT 25529 30 96.7 30 .............................T CTAAGCGAAGGCTAACGCTCACATTCAAAA 25589 30 100.0 30 .............................. TAAAACCGAATCCCAAGCTGAATAGGTTTT 25649 30 96.7 30 ............................G. ACATGTGAGCTTCACACCATCCTTCAGGCA 25709 30 96.7 30 .............................T GTTGCGGCTCTCGCATGATGTGGTTTGATC 25769 30 93.3 30 ............................AA CTGAAAAGATGTTGAGTGCAGGTTGTTCTT 25829 30 96.7 30 .............................T GATGCTGAAAACTTCACAGCAGGCAATCCA 25889 30 100.0 30 .............................. TAAAGGATGTGAGGAACGTCGTGAGTGGAT 25949 30 93.3 30 ............................AA CTGACTAGTGATTTGAGGAATGTGCTCACC 26009 30 93.3 30 ............................GA TGCAGGCGGAGTCTGCTATGCGACTGGTAC 26069 30 90.0 30 .................T..........AA ATAACCACGGTTATGGTAAGTCACTTTTAC 26129 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 26189 30 66.7 0 ...T...A...T.....T..C...AGCG.T | ========== ====== ====== ====== ============================== ================================ ================== 113 30 95.5 30 GTTCATGGCGGCATACGCCATTTAGAAATG # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAATAGACAAAGCCGAACAGCCTGCTGAAGTTGAACAGATTAAACAGTTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.19, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //