Array 1 594990-594531 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEXJ01000001.1 Lactobacillus gasseri strain JCM 1025 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 594989 29 100.0 32 ............................. CTACATTCCTGCCAGTTGCTAGCCAGCTCTCT 594928 29 96.6 33 ............................C GAGTCTCTTCTTCTTGGTACTAAGACGGTTACG 594866 29 100.0 32 ............................. TGCTTACCATTTTGAAATTGTGTGTACATATT 594805 29 96.6 32 ............................C GTTTAGAAAGGACTAGCACGATGAACGAAATT 594744 29 96.6 34 ............................C AGAATGATTGCATCATTTAAGGAAACATGGGAGT 594681 29 100.0 32 ............................. GAAAAAGAAGCCTGACGATGAAAAACAATTTG 594620 29 100.0 32 ............................. TAACCAACTTTTGCGTCGAAATATCCAAACAA 594559 29 75.9 0 .....................GACTC.TG | ========== ====== ====== ====== ============================= ================================== ================== 8 29 95.7 33 GTATTCTCCACGTATGTGGAGATGATCCT # Left flank : AGCTGTCAAGTATATTAAGAAAAATGATCCAGAAGTTTTTTATAGATTGATAAAAGATATCCCAGAAGTTCCGGAGCATATTTCTAAATTAACAGGGTTGACAACTAAAAAATTACGAGATAGTGGTGTATCTTTAAGAGATGCACTAATTGAATTTAAAAAATTTGTTGGATCTCGACTAATAGTAGGCTATAATTTACCTTTTGATATGAGCTTTTTGGAAAATAGTATTAAGAAAGAAAGTTTAAATTCTCTGGAAAACAGAGCAAAGGACATTTTACCTATTGTGAAGCGGAAAAATAAATTCTTAGAAGATTATCATCTAGATACTGTACTGAAAAAATATGATATTGAAAACGAGAATCCACATCACGCAGACTCTGATGCAAAGAGTACTTGGTATTTAACAAAGAAATTGATAGAAATTAAAAGTTTGATAATTTAAATGAAATTGGCAAATTTTAGTAAATAAAATGCTGATTTGACGGGATTTTTTTAGT # Right flank : ATAGACAAATATATCAGCTTTTAGGCTAAAGTAAGAATTTTGTAGGTATAAAAAAATGAAAGTTAGATATGCTGGTGAAAGTTTTTATAGTGGGTTAGGTTTGGCAAATGGCAAGGTATATGTAGTTTTAGATAAAAAAGGACCTTTTTATAGAATAATCGATGATAGTGGAGAAGATTATTTGTATTCGAAGACTAATCCTGCTCCACTAGATGGTAATTCAAAAGGTGGGTATTGGAATATAGTTGAGTATTGAAAGAGCATAATAAAAACGCACTCATAAGCCTAATTTAAGCCTATCAGTGCGTTATTTTGTGTAATTCTAAATATTCTTAACAAATTCAGCGATTCTCTTTAATGCTTCTTTTAATTGCTCAGTTGAAGAAGCGTATGACATTCTTACGTAGCCTTGGCCACCTTGACCGAAGTAGCGACCAGGAGTTACACCAACTTTTGCCTTGGTAGCTAATTCATTTGCAAATGCTTCATCATCAGTACCA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.50,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 606307-606701 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEXJ01000001.1 Lactobacillus gasseri strain JCM 1025 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 606307 29 89.7 32 ..G....T......A.............. AAGTTAGTCATTGATTTTACAGCAGGGGCTTA 606368 29 86.2 32 ..G.....T....G..............C TGGTCCTACACAGCAAATGGCGTTCACAATGA 606429 29 96.6 32 .....................G....... AGTCCTAAAATGGAGCTTCAGCAGATGCTTGA 606490 29 96.6 32 .......................A..... GGTAACCCATATTTCTTTCGACTAGATATCGC 606551 29 96.6 32 ............................C GCTATTGCAACCTATGAAGGCGAAATGCTTAA 606612 29 96.6 32 ..........T.................. GTAGCAGCAGAAGTTGAGGGAGCCATTTCAAA 606673 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.6 32 GTATTCTCCACGTATGTGGAGATGATCCT # Left flank : TTGCGTAAGAGCTAAACTTGCATGTTCAGGATCGCGTCCTGTTGCAAAAGCATTTGGATCTGGATCAGGAGTAATATAAATTTTAGGAACAGGCAACCCCCCTGCTAAACAGAGTTCTTCAACAAGCTCATATATTTCAGGATCACTTTCTTTAGTGATTTCAACCGCATTCGTAACTTTCATTAAATGTTGAGTTGCATCAAAGTAAACGTGCGAAATATAAATTAATCCGATAATAAAAAATCCAATTCCTACATATGAAGTAAAAATCATTCCAAGAAAAATACTTAATACCAGTATTAAAACTGTATACAATCCCAAAATAATCCATGTATTTCTCTTATTTTGTTCTATTTGTTTATATAGCATTTTTCACTCCAACTATTTATGCTAAAAGTCTATGAACTAATTATACAAAATTTTCAATTGATAATACCTAAAATGACAAAAAATGCTATTATTTGAATTAAGGATGACTGATAAATCACGGATCTTTTAGT # Right flank : TTCATTCAAAACAGTATATTTTTCATAAATAAAAGTGTTCTCCACGCATGTGGCATGTGGAGGTATTAAAAAGGTCTGTTATCATCAAGTAACAGACCTTTTTCTTATTTAAAATATTCTAATTTGCCAAGTAAACTTTGATTATCAACTCCAAGTTTTTACCATCCCAATGGAAGTTTTTTACTCGACCAAATAAAAGATTACCGGAATCAATCAAACGACTAAAAATCAAATTATGTTCACATGGAATATAACCTAATTTTAGCCCAGCCGGTGTAGCTACAGAAATAGCATTTTTGTCGTACTTATTATCAGCCTCACGTATTAATAGAACGGGATCATTCTCTTTTAGACGAGGAACTACCTTATCTTCAAGATGTAAATAATCAGAACCACGCACTTCACAACCATATAAAAATGTGCTGTGACTTTCTCCTGATTGTTTATAATAGATTTTTTTCAAATCAGTAACCTGATTTTCTAACTTATCAATTCTATCC # Questionable array : NO Score: 3.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGATGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.50,-10.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 608085-607917 **** Predicted by CRISPRDetect 2.4 *** >NZ_BEXJ01000001.1 Lactobacillus gasseri strain JCM 1025 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 608084 36 100.0 30 .................................... AAACCATCTCATCGTTGCTCATCATCCTAT 608018 36 100.0 30 .................................... CTGGAAGACCATGAAAGCATTCCACACAAG 607952 36 88.9 0 ..........................A.....AT.T | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 96.3 30 GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Left flank : AATCAAAATATTTTTGACAAGTATATGCCCGTAATTATAAAAGGATACATTGAAGGGCTTAATGAAGCGGATCGTAATGAAATATTAAAAACCTACCATAAACTAGAGGGGATAATTCAAGATTCACTTCTACTTGAAGATCTACCATTAGAACTTGAATTTAATGAAGACTTGAAGAAGTTCTTAAAGATAGAAAATCTACATTTAGATACTAAGTTTTTAGAAGAGCCATATGCTATAATTGAATCGATCTTAAAAATACATCAAAACTATAATCTTCATTCCATACCTGTTGCCTGTAATGTAGCTCATTACTTAAATCTAACCCAGTTAGGAATGTTAAATGATCTATTAAAAGAAATGAGGTTGAAATTGATTTTAATAGAATTCACATCTGCGGATTTTCTGGTTTTTCCAAAGGATGTTGATTATTTCTACATTGATCAAGATCTTGTTGATTGGTACTAACTATTTAATTAAAAACTGATTATAAAATTTCG # Right flank : GTAGTGAGTTACGTTAATTAGTCGTAATTACACTACTGGTCCATTGTTTTTCAATGGGCCTTTTTATTATATTCCGAACCGTTTTTCACCTCTTTAGTGAAAAAGTGTATTTTAAATGTAAGTGCTGTTTAATACCATATAAGTGTTAAGAAAAATAATATTAATGAAGAATTTAAAAACGACTAAGAATGTTTCATTGATATTGCATCATCAAATTTTATGGCTTCTAACATGAGAAAAGCAGCAAAGAGGACTGGATTAGATTATAAAATTCAAGCTCGAGGTGGAGTAAAATTAGGTGACAATGTAAATCAAATTAATGCCTTGATGGTGGGTCCTCACTTAAAGTCAGAATTTGATGCTATTAAGACACAGGTTCCTGATAAAATAAAAGTAATTTTAATTAAACCAAATTACTATTCAATTTCTATTTGATTTTATGGATTATATGAAATTAGATAAGCAAAAGATCATCGCAGATCTTTTCCTCAGGGCGCGGT # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.88%AT] # Reference repeat match prediction: R [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //