Array 1 83422-84833 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNCZ01000022.1 Parabacteroides merdae strain BIOML-A17 scaffold22_size84882, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 83422 32 100.0 34 ................................ GCAATGCCTCCAGGAGACGGGAGCCAATCAGAAG 83488 32 100.0 34 ................................ TAATCGGGGTACAACAACTCGAGAAATAGGTAAT 83554 32 100.0 34 ................................ CAAATAGAGCGACCAGCCTTAATACCAAAAAAAC 83620 32 100.0 35 ................................ TCCGAAGGTGGTGCTTTATCTGAATCCGGTTTGGG 83687 32 100.0 33 ................................ AACCTCAAACATTTAAGTAATGGCAAACGTTTT 83752 32 100.0 35 ................................ ACGACGCCGAGCTTGCATAATACGACGTTTAGCAG 83819 32 100.0 32 ................................ CGTCACCCGGCAATGTTGCGAAAAAAGTACTA 83883 32 100.0 35 ................................ CGTAAATACGGGAGTAATACGACCAAGGTCAGTAG 83950 32 100.0 34 ................................ ATCAGAAGGAAGTCGCTTAACGACAACTCGATGA 84016 32 100.0 33 ................................ AGGATTGAAAGAATCAAGACGCTCGCGATAAGT 84081 32 100.0 33 ................................ TTAAGGCCCAGGTGTCTGAAACTTGGTCTCGTA 84146 32 100.0 34 ................................ CAAACGACACAGTTACCATTAGACTCATAACCAG 84212 32 100.0 36 ................................ GATGATTGCTCATTCTTATCCCCTCATGCCATCAGT 84280 32 100.0 34 ................................ CTTATAGCTAAATCCACGGAATTGATTAAGCTCA 84346 32 100.0 34 ................................ CTTAATGGTAAAAAGACATATAATCGTTGGATAA 84412 32 100.0 33 ................................ GCTATCTCGCGTGTGGCGAGTATGGCTCTAAAA 84477 32 100.0 33 ................................ ATCTTAGTTTGGATCGGAAACATCATCGGCATT 84542 32 100.0 34 ................................ TTGAAAAAACATTTCGCAAACAACTGAAAAAGAT 84608 32 100.0 34 ................................ ATGAAGTTGCAAATGTTACCTTAGCATTATAGAA 84674 32 100.0 32 ................................ TGTTATGTCGCGTTTAAAGGATGCTGGTTTAA 84738 32 100.0 32 ................................ TAAAATAGCTAAAAACAACATTTGGGATATGA 84802 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 100.0 34 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : TACTTCCAGGAGATCCCGTCTCCCCAGAGCCTGTGAAGTCATCCCACTCGTTCCCATCCGCAAGAAACCGAACAACCAGTAAATAATATTGAACAGCATCCCCCCTACCGCAATCGCCCCGATATAGGAAGCGGCCCCCAAATGTCCGACAATCGCCACATCGACCAATCCCAACAAAGGAACCGTTATATTGGATACAATAGAAGGAAGCGCTAACTGAAGTATCTTTTTATTCATTATTTATCGTATCTATAAAAACTATTCCTAACTTTGTCAGCAAAGTTACAGATTACTTTAGAAATAACATGATTACACTTATGTTTCAATAACAAAAACGCGAACCCTAAGTAATTGTAAAAAACGTTGGATGTTCGCATCCTCTATAAATCATACACTTATAGATTTATTTAGAGAATATGAACATTTATTGCTTTTCTACTTTATCATTCGCAAAATTACAATTTAAAAGTGTCATCAATAAAGCTTTTCACAAACATGGA # Right flank : CCCGACCAAGCATGGACAGTCACCGGCAAAACCAAGTCGCATCTTTTAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.40,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 291112-290156 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNCZ01000001.1 Parabacteroides merdae strain BIOML-A17 scaffold1_size291113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 291111 32 84.4 34 ...T.......G......C....C.....C.. TAATGGGGGAACCGTTTTACAAACAGCCAATATA 291045 32 100.0 33 ................................ AAGAGAAGGATTGCCTAAAATCTCATCTCTACG 290980 32 100.0 34 ................................ ACGACTGATTTAGGCCGCATTACTCCGGTATTTA 290914 32 100.0 33 ................................ ACGGATGTAGATACGATCAAAATCCAAGGCCTT 290849 32 100.0 35 ................................ TGATAAAACAGGAATAAAACACAAAAAACCGTTCC 290782 32 100.0 34 ................................ AGGATTGTATGTAAGTGTAATAAAAAGAGGTGCG 290716 32 100.0 33 ................................ CTGTTTGTCTCTTACTCCTTATTCCCAATTCAT 290651 32 100.0 35 ................................ ACGAATATAAATACGATCAAAGCCCAAGGCCTTTT 290584 32 100.0 33 ................................ TTTGAATTTACCCCCTTTAGAGGATATGGAAGC 290519 32 100.0 33 ................................ AAGGTGCTGCCTATGCTAAAACTCTCGCTGAGA 290454 32 100.0 35 ................................ GACTGTCTGAGTAATAGGATTAACAATAATGTCAC 290387 32 100.0 36 ................................ TTATATTGTACATCTATTGCCATCAAATGAATCATT 290319 32 100.0 34 ................................ AATGGACGAGCCGTTGAAAGAGCTGTCATACTTG 290253 32 100.0 34 ................................ AGTTGACAACCGGTACGCGTGTCCTTCGGAGTCT 290187 32 84.4 0 .......................C....GCCA | ========== ====== ====== ====== ================================ ==================================== ================== 15 32 97.9 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : C # Right flank : GAAGTTGATACACGTGTCATAGCCGTCGCACCCGTAAAGGATGCGACGGTAATGTTATTGTTGTAATTCAGACACATTTCAATCCAAACGCACTATTATAACCAACTCAATCTGTAACACCTATCACATCAACAGTAGTTCCTCTACCCAAGCACCGTCCAAAACCAATCCGGCCCGTTCATCATAACACCTTCCATCTTCCAATATAAAAATCCCAGCATACACTCCCACTGTTCCCTGTTTACATAACTGTTCGAAATCCCATTTTCTAATGGATACGCTATACTGCTGTAGCTTACGTAACAACCAAAATTCCGGGCCAATCCGCTTCAGTTCCTCCAGTAAGGTTGCACCATCACCATAGCCGACCAAGATGGATACCGAGTCTTTATCGTCTATCAACCGGAACTTCTCTGCAGCAGTTGCAAACATAAAGTGCATTTCTGCAAAACCTTTATATAACAGACCTTTTATATTAGCCTTATCAAAGGTGTTACAAT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 70-434 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNCZ01000074.1 Parabacteroides merdae strain BIOML-A17 scaffold74_size7451, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 70 32 100.0 32 ................................ TTGTGCAGCAATGGCGCGCTTTTGGCGTCTAC 134 32 100.0 34 ................................ ATTGCCCTCAAAAGGAATACAATAATCCCATAAT 200 32 100.0 35 ................................ GAAATCAACCTTATAAGCATTACCGTCCTCGTCAA 267 32 100.0 33 ................................ TTACCAGAGTGCAGGAGTTTTTTCGCAATGCCA 332 32 100.0 39 ................................ GTCCGTTTTAGAATACAACAGTAATAATGCAACTAATAA 403 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 6 32 100.0 35 GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Left flank : GAGATCTACACTACTAGGTTCGTCGGCAGCGTCAGATGTGTACAAGCGACAGGTCACCGGCAAAACCAAG # Right flank : CCACTCTTCAAAGGCGCGTTTGAACGTGTCTTTAATGTCGCATCCTTTACGGGGACAACTATTTATAATATTTTTTGCAAGAAGATTACAGGATTAAAATATTTGTTTGTTAGAAAATAAAATATATCTTTGTTGAACAGAGTTATAAAGATACCTTATTACTCAAAGCATAAACACCTTATATTACGTTAACCTAAACATATGATATATACAAATAAAGAATACTGTCTTGAGGTTAAAGGAAGCATGGCCTGCTTTACCCGTCCGGAGATGAAAGTCGAAAGAGTTAGCTACGACATAATAACGCCATCTGCTGCCCGAGCTATTTTCGAATCTATATTTTGGAAACCAGCCATACAATGGAATATTACTCGAATAGAAGTATTAAATCCAATCAGATGGTTTTCCATGAAAAGAAATGAGATTGGAAGTTTAATGAGCCCCCGTTCATCCGGATTATTCATCGAAGATAATCGGCAACAAAAATCCAGTTTGTTACT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCTTTTACAGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.40,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 6115-7400 **** Predicted by CRISPRDetect 2.4 *** >NZ_WNCZ01000074.1 Parabacteroides merdae strain BIOML-A17 scaffold74_size7451, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 6115 32 100.0 33 ................................ ACGAACATGAGCATAAGCTTCAGCCCATTTTTT 6180 32 100.0 34 ................................ TCAAAACTACGGAACATGATAAAGTTGCGGAGAG 6246 32 100.0 34 ................................ AGGCATATTCAAAGCATCATAGCGAACATTAACG 6312 32 100.0 34 ................................ TCGCCATCTATTGCGCTCAATGGAGAGGGTAATA 6378 32 100.0 35 ................................ ATTTTTGTTTGGATCGGGAACATCATCGGCATAAA 6445 32 100.0 34 ................................ TAGAGATCTCCTGTATGCCTTTTATTGCCAAAGC 6511 32 100.0 34 ................................ CAAGCCTTGCAATCTTTATTACAACCCTTGGAAC 6577 32 100.0 34 ................................ TATGAAAGAATATACCGTTATATGTTTTATAACA 6643 32 100.0 33 ................................ AGGAAGGTGGTGCGTTAAAGCCGTCCGGTCTTG 6708 32 100.0 34 ................................ TTGACATCACCAATTTTATTAAAAACGTTTGCCA 6774 32 100.0 35 ................................ CCTTTAATACGACATACACACCACTACCTTGAAGA 6841 32 100.0 35 ................................ ACGGCGACGAGCCTGCATAATACGGCGTTTAGCAG 6908 32 100.0 34 ................................ TGCCAATTAGAATCAACACGAGAAACGGGTATGC 6974 32 100.0 34 ................................ TTAACAATCGCCGTTTTGATCTCGAGTGTGAAGA 7040 32 100.0 34 ................................ CTCTGGTCAGAGCCCTATGGATCGCGTTTATATG 7106 32 100.0 34 ................................ AATGAATATATTTATACTTTAACAGAACGTTTGG 7172 32 100.0 34 ................................ CCCCTGAACTTAAAGTTGATGCGGATAGAAATAC 7238 32 100.0 34 ................................ CTTTAATTGATGTAGAAACGAAGATGGCTTTAAA 7304 32 100.0 33 ................................ AGAAACAATGCTACTGTAGATAAAGTAAGAATT 7369 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 20 32 100.0 34 GTCGTACCTTATATAGGTACGTGGATTGAAAC # Left flank : TTTAGATAATTATCCGGTCTTTTTAATGAAGTAAGTTCATGTATGTTCTAGTTACATATGACGTAGAAACGATGACTTCCGACGGACAGCGCAGGTTACGTCAGGTAGCACGTCAATGCCTGAATTATGGCCAACGCGTCCAAAATTCCGTTTTTGAATGCTCTGTCTCGCCTGCTCAATTTACCGAGTTAAGATTAAAACTATCGGATATCATCGATCATAAAAAAGATAGTATTCGTTTCTATTTCTTGGGAAATAATTATTCTAAAAGAGTTGAATACATAGGTGTCGTCACATCCTATAATGTAGAAGATGAACTTATAATATAACTGTTTGCGAACATTAAGCATTAACAAAAAGCTGGAGTTTTCGCAATCATTGATTATTAGCCTATTAAACACTCCTATTAGTTTTATTTCATCAATAAAAAATCCAAAAAGTTTATTATCGCATAAATGCATTGATAACAGACTGTAAATGTTTGCATTATTTGTAATGCA # Right flank : TAATGGGGGAACCGTTTTACAAACAGCCAATATAGTCGTACCTTATATAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTACCTTATATAGGTACGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //