Array 1 1262118-1260350 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT629747.1 Pseudomonas chlororaphis strain LMG 21630 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1262117 28 100.0 32 ............................ AGTATGCGGCCACAGTGGGGCAGACGCAGCTT 1262057 28 100.0 32 ............................ ATGATCGAGTGCATCAGCACCGCGGTATCCAT 1261997 28 100.0 32 ............................ TATGTCATCACCAACATCGGCAACACCGTCCG 1261937 28 100.0 32 ............................ ACCAGCAGGCTGCCGTATTCGCGTCGCATCAC 1261877 28 100.0 32 ............................ GCGGTTTGCGTCTTCCTGGGCCTTGAGGAACC 1261817 28 100.0 32 ............................ TGATAATCGACCAGTCGCTGAAAGGGCACATT 1261757 28 100.0 32 ............................ AGATCCTGTCGAAATCACGGTTTACCGTTGAC 1261697 28 100.0 32 ............................ AAGGCCGCCGCCGAGCGCCGCGAGCTGGAGCT 1261637 28 100.0 32 ............................ CGGCTGATCGAGCGCGGTAGCGCAGTGAAGAC 1261577 28 100.0 32 ............................ TTTTGGCGTTTGGCCAGAAGGCCGCGCAGCGC 1261517 28 100.0 32 ............................ TACCGCGAGAGCTACGGCCGCAGAACTATGGA 1261457 28 100.0 32 ............................ TGGTCGAGGAAGGCGACGACCTGCAGCCTGGC 1261397 28 100.0 32 ............................ GCTGCGCCCGGTCAACACAACTCAGAGCGATT 1261337 28 100.0 32 ............................ CTGATCTGATTCCTATTTCGCTTTGGGACGAT 1261277 28 100.0 32 ............................ TGCTGGCGAAATCAGTAGGTTTTATGTGCCGC 1261217 28 100.0 32 ............................ TCGTCATCATGCTCCTCCCTGTTAAAGCTACG 1261157 28 100.0 32 ............................ GTGAGACGGTCGGCCACCGGGCGGCGGTCCTC 1261097 28 100.0 32 ............................ GCCCCCTGATGAGGACGAAAAGTTGCAGCAAG 1261037 28 100.0 32 ............................ TGGCCCAGGGAATTGCGCGGCGTGCCGGTGTG 1260977 28 100.0 32 ............................ TTCCAGCCGCCCGCTGCCGGCGGCTTGACCAT 1260917 28 100.0 32 ............................ AGGCATCGTTCACCGGCGGTTCGCAGATGCAC 1260857 28 100.0 32 ............................ AGGCCGAACGCGAAGCCACTCTGCGCCGCGAG 1260797 28 100.0 32 ............................ ATGCGGTGGAGACCGCGGTTGATCGCTTCGTC 1260737 28 100.0 32 ............................ AAAGCGAAGCAGCGCTCGGTAACTGCTGATGA 1260677 28 100.0 32 ............................ ACGTACCCGTCGGGCACGCCCCGGGTTTGTGC 1260617 28 100.0 32 ............................ AGGGAAACATTGATGTTGCCGCTCTGGCTCTT 1260557 28 100.0 32 ............................ ATCTGCAGTACCGCTGCCGGCGCCGTCTGTAA 1260497 28 100.0 32 ............................ CTTCGGGCGCTAAGACCCGGATAAATCGCCCC 1260437 28 96.4 32 ............A............... TGTCCGCAGCCTTCCAATTCGATAATTCATTT 1260377 28 67.9 0 T..........C.........CCGTTCC | ========== ====== ====== ====== ============================ ================================ ================== 30 28 98.8 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : AGCACTGGCAAGCCTGTTGGCGCTGAACTGGCTGACGGGCATGCGCGATCACGTACAACCGAGCGAACTCCGCGCAGTACCAAGCCCAGTGCAATACCGGCATGTCAGCCGCGTGCAGACAGACAGCAACCCCGAACGCGCTCGCCGACGCCTGATCAAGCGTCACGGGATTACCGAAGAAGAAGCCCGCCAACGGATTCCCGACCACGCCGCAAAACGCTGCGACCTGCCCTTCGCCAACCTGCGCAGCCACAGCAACGGCCAGACCTTCCGCCTGTTCGTCCGTCATGGTCCATTGCTCGACACACCACAGCCAGGCAGTTTTGGCAGTTATGGTTTGAGCACGACGGCAACCATCCCCTGGTTCTGACCCTCTTTTTTCCGCCTGACAAAGCCCCTTGTAAAATCAATGAGTTACAGGGGGCCACGGAAAAAGCCTATAAACCCGGTTTTGAAGGGTTTTCTCTTTAAGAACGTGGGGTTATGGAGGGAGGGGTCTA # Right flank : CTTCTCTACGGCTCAAAAACGCACCCTCAACACACTCCCCAACCACCTCCCCCCGACATCCAGAATTTTCATACTGACCCCCGCACTTTATTTCGTTTGCGACGCGGCCTCGCTCTTGGCTTAGATAGCCGCCATGTTCCAGGTAGCCAGAGCCCTTAGCCCATGAGCAGCGAAAGCATCAGCCAGTCGATTTCCATCGTTCACCCCATCCGCCTGAGCCACGGCAAGAATGCCGAGGTGTGGGACGAGAACGGCAAGCGCTACATCGATTTCGTCGGCGGGATCGGCGTGCTCAACCTGGGGCATTGTCATCCGCGGGTGGTGGCGGCGATTCAGCAGCAGGCCACCCGGCTGACCCACTACGCGTTCAACGCGGCGCCCCACGGGCCCTATGTCGAGTTCATGGAGCGGCTGGCGCGTTTCATGCCCTTGAGTTACCCGGTCAGCGGCATGCTCACCAACAGCGGCGCGGAAGCGGCGGAGAACGCCTTGAAGATCGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 6106033-6104924 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT629747.1 Pseudomonas chlororaphis strain LMG 21630 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6106032 28 100.0 32 ............................ GTTGGCTCAGTGCTGATGCGCGACGCCGGGAC 6105972 28 100.0 32 ............................ TGGGAAGGCCACGGCCAGAACATCGTCTACGC 6105912 28 100.0 32 ............................ AATGAAGAACCCGGCGCTGACCGCCGCTAACG 6105852 28 100.0 32 ............................ TTGAGCCATACGAAGTTCAGCGGGTTTATCTC 6105792 28 100.0 32 ............................ TAGTTGTCAGCAATACGGCCAACGTCGAACTG 6105732 28 100.0 33 ............................ ATCCGTTACTGACGCTTCTTGCATTTTCTTAAA 6105671 28 100.0 32 ............................ TGGTCACGCACGCCAGGGCCACCTGGCACGGT 6105611 28 100.0 32 ............................ ATAGCCGCGCGCAACGCCGGCGTCTGCAAGAC 6105551 28 100.0 32 ............................ TGGTTGTAACGCTGATCGCGGCTAACCACCTC 6105491 28 100.0 32 ............................ AGACGAAATGGACATTTGAGGATCTGCAGCAT 6105431 28 100.0 32 ............................ AGATACCGCGATGCCACAGGCCATCAGGTCGG 6105371 28 100.0 32 ............................ CGGCACCAGTTTCGGTGCCGACCAAAGCACCC 6105311 28 100.0 32 ............................ AACAAGCGGCGCCGTAGCCGCTACGTCACGAG 6105251 28 100.0 32 ............................ AGGGGATCAGGGTGTAGTTGTCGGGCATGCCC 6105191 28 100.0 32 ............................ CTACTGCTGGCCGAGGCCGGCGAAACCTTCAT 6105131 28 96.4 32 ...........A................ CAGGATCGCGCCGAACAAGAGCACCGCCTGTT 6105071 28 96.4 32 ...........A................ ATCTGCGCTTCGCGGCCAGCGTTGTAGGACTG 6105011 28 92.9 32 ...........A..........C..... AGCCGGGCTTTTTGGTTTCTGCAATTTGGCTA 6104951 28 67.9 0 .C.........C.C.......CC.AGCG | ========== ====== ====== ====== ============================ ================================= ================== 19 28 97.6 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : ACCGCTCGGTGCTTAAAGCGCTTAAAGAAACAGCCAGCTCTACCATTGGCAACAACTCGCTCTTCACCGTCCGCCCAGGCATCAGCGCCGAAGAGGCGTTGCTGCATGTGTCGATGCTGCTCAAGTCCGCCGAGGAGGTTTCCGACGAGATCACCGAGCACGCCAGCGGTATCGAGCGAGGCCTGATCTGGTCGCTGGTGCATTCCGTGGAGATGGCGCGCGGTGTGGTGGATGCCTTGCTCGATGGTAATCGTCTCTGATCGACAACGGCCCGCTGGCCGCGATCCTCCTTGAGATTCGCGGCTGGGCGGGCCAGCCAAAACGGATTCATGGCGCTAGTCTGAGCGCCGGTGTTCTGTCCCTGACGCTGACCCTTTTTTCCGAACGGATTCCGGCCCTATGTAAATCAAACACTTACAAAGGTCTCTAGAAAGAGGAGTAAATATGGTGTCCAGCATGATTTCTCTTTGAAATCATGGCGCTATTGGGATATCTGTCTA # Right flank : TTAATCCATAGCATCAGTCCGCGTTGGGAGATAACACCGCGACCCAGTTCCCAATCTCACTCCACAACCATGCCACCTACCAATCCCACCCCTTGTCATATCCCCTTCATCGCCGCCTACTAAGGTTTGCTTTTGACATTAAGTCAGGGAGCAACCATGAGCGATTTCACTCTCGGTCGGCGGCGTTTGATTCAGGTGGCGGGGGCAGGGCTGTTGCTGCCGGGGTTGGCGCCGGCGGTGATTGCCTCAGGCAAGGACCGGCCGAAGATGGTCGATGGCGTGCAGTCCGGGGATCTGCTCGGCGATCGGGCGATGGTCTGGAGCCGTACCGACCGGCCGGCGCGGATGGTGGTGGAGTGGGATACCCGCAGCCTGTTCAGCAACCCGCGCAAGTTTGTCTCCCCCCTGGTCGATGCCCGCACCGACTTCACGGCGCGGGTCGAGTTGGGTGGGCTGCCCACCGACCAGGCGATTTTTTATCGGGTGTACTTCGAAGACGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //