Array 1 1237641-1239921 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012294.1 Pediococcus damnosus strain TMW 2.1536 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1237641 36 100.0 30 .................................... AGGTATCGTTTGTAATCCTACGAGTGCAAT 1237707 36 100.0 30 .................................... GTGATACCAGTGCCGTTTAACGCTGACATC 1237773 36 100.0 30 .................................... CATAAAACATGATAAAGACGTTCAGCATGA 1237839 36 100.0 30 .................................... TATTATATGCAGATCCTAATGTTGAACTAA 1237905 36 100.0 30 .................................... CACTGATTAGTTTGGTCTCACAATCCAAGC 1237971 36 100.0 30 .................................... ACGCAAGACCAAATTGATTCTGGCCCAGCA 1238037 36 100.0 30 .................................... ATGGACGTTCATGTATGGCTCATTCTCAAA 1238103 36 100.0 30 .................................... GCCCGTTTGGGTTTGGCCTTGAACATAATC 1238169 36 100.0 30 .................................... TGTATTACAGGGCTTACATTGCCTACGCGG 1238235 36 100.0 30 .................................... AAAAGTTTGTGCTGCCAATGGCAGGAACGT 1238301 36 100.0 30 .................................... CATTAACAATCGCAAACTCACCATTTCCTT 1238367 36 100.0 30 .................................... GTTTGTCCGAACCGTGCGTCATGCACATCT 1238433 36 100.0 30 .................................... TACTCAATCGCAAATTGATTCCGCACCAGA 1238499 36 100.0 30 .................................... TGTTAGGCCTTCCACAGTAAAGCTAATTTT 1238565 36 100.0 30 .................................... ATTCGACTATCCCGGATTGATTGGAGATTC 1238631 36 100.0 30 .................................... CTCGGTACGCAATAACCTTGCCGCCACGTC 1238697 36 100.0 30 .................................... ACCCTTCGATTACTAACCCGCTTAATCTGA 1238763 36 100.0 30 .................................... TATGATGATTGCGTGCAGTAGGTGGTATAC 1238829 36 100.0 30 .................................... AAAACGTTGATTGATAACGGTGTAGCAGAT 1238895 36 97.2 30 ...................................T GGTAAGACTGTTTACAGTCCCTCGATAAGT 1238961 36 100.0 30 .................................... TCATCTCCTCCGATTGCATCTGTATCTAGT 1239027 36 100.0 30 .................................... TGCCGACATTGCCGAGACCCCAACCAGCTT 1239093 36 100.0 30 .................................... TTAGCTTATGCCAACATTGGTGGTAATGAT 1239159 36 97.2 30 ..............................G..... TTCGCTTTCTGTTGAATAGTAATATGTGTT 1239225 36 100.0 30 .................................... GCCATTGGTGTCTAATGACTGTGGTGCTGT 1239291 36 100.0 30 .................................... CGTGTACATGATGTGGTCGTCCCCAATGTT 1239357 36 100.0 31 .................................... CTAGATACAGGTAATCTGTGGGTATTGTGTG 1239424 36 97.2 30 ................................A... TTCACCTACAATTAATGTATTACCCTTTAA 1239490 36 100.0 30 .................................... TAATAACGGAGCGTTAAAGGCTTGGAGTTA 1239556 36 100.0 30 .................................... CGGGGTCGCTTCCACATATCCTGTGGTCCA 1239622 36 100.0 30 .................................... CCGTTGGTCCGACAACTTCCGCAGCTCTTT 1239688 36 100.0 30 .................................... CCGGTCGTCGTCGGTTAAGTACCACTCATG 1239754 36 100.0 30 .................................... GTGTGGCGTTGGCTAACGTTGTTGAGGGCA 1239820 36 100.0 30 .................................... TAATGTAAAAAAGCTTGACTGTATACACAT 1239886 36 91.7 0 .................................GAA | ========== ====== ====== ====== ==================================== =============================== ================== 35 36 99.5 30 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Left flank : CGCAGATTTAAATAAAATGTTTCAAGGACAATTACAAAAAAAGATCGTTTCGAAATTAGATGATGATACAAGATTGCAATTAACGGATCTTAATAATAAATTAAAATCACTTATTTTTGATGCTACGTTTTCGTTAGACCTTCCGTTAAAAGTAGATAGTGAATTTGATCCAGTTAAATTAGTTAAATACTGTAATGTTGGGTTTGTAAGTGCTTTAAATAGGGATCCTTATGATATAATTGAAACTGTATTAAAAACTGCTTCTGAATTAAAAGAAACAAAAATATTAATCTTAACTAATGTGCGCAATTATCTCAGTGTCAGCCAATTTAATGAATTGGTGAGTTTAATTAGCACGCTTGATTTGAACATTCTGTTTATCGAATTCTCAGATAACAGATAATCACGAAGAATTCGATAAATGCCGTTATTGCTACGTTGATCAGGATTTTGTTGATTGGCGTTATTAATGTCTATGAGAGTAGCATTATAAAAAAACG # Right flank : ATCAGGAGCGGCTTGACGCATTGAGGTAAAATAGTTTTAATTATTATCGTATATATAAAATAAATGAACCTCAATTGCACCAAAATCTGAACTTCATTAAAACAGAAAAGAACTACACAAGGAGCCAAGTATGCAAGTAACAGTAAAATCATTTTCAGAGTTATCCAATACAGAACTATTTAAAATCTACAAACTCCGTACCCAAGTCTTTGTTGTTGAACAATTATGTGCCTATCAAGAGGTAGACGATGAGGATCTCATCGCCCAGCATTTACAATTTACAAACGAGGCCCAACAGTTAGTGGCCTATTTACGAATCATCCCTGAAACGAACGAAACGATTGTTCATATTGGTCGGGTGGTTGTTAATCCACTCTTTCGCAAACAAGGGTATGGACGCAAACTCATTACGAGTGGACTTGAAACGATTAAAAAAGATATGCCAAAGGTCACAACGGTAAAGATTCAGGCCCAGGCTTATTTACGATCCTTTTATCAAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //