Array 1 216848-218317 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKND010000003.1 Providencia rettgeri strain 2020EL-00079 NODE_3_length_281160_cov_29.701797, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 216848 28 100.0 33 ............................ AGTGTAATCATCTGTCGCTAAATCCAAACGTTT 216909 28 100.0 33 ............................ TTAACTGTTCTTAGGTTGGCTTAACCAGATTCT 216970 28 100.0 32 ............................ ATGTATTCCGCTGAACCTCCCCAAGCTTCACA 217030 28 100.0 32 ............................ ATCCAGACCAATGTGCAGTGACGATGAAGGAA 217090 28 100.0 32 ............................ TTGGGCTGCAAAGAAAGCGGAATCAATGCTCC 217150 28 100.0 32 ............................ GCTGTAATTAGCCAAGTATGCAGAACTGCATC 217210 28 100.0 32 ............................ TTGTGGCATTTCCTTGCCACTGCTCGCAATCC 217270 28 100.0 32 ............................ CATCGTAATGGCGAGTCACTCCAAATTCAACA 217330 28 100.0 32 ............................ TTTGCTCTCCGCCATTCCAGCGACTACGGCGA 217390 28 100.0 32 ............................ TTTGGGGAATTGCAGGAGGGATAACACCTTCC 217450 28 100.0 32 ............................ AAGAAGAGTGTAAGCGACGAACTGGAATAAGA 217510 28 100.0 32 ............................ ACTAACTACCGCGGCATTATAACCAAGAGCCA 217570 28 100.0 32 ............................ TAGTTGTATTTTCTCTAAAAGGTGTGCTACGA 217630 28 96.4 32 ............A............... AGTAGGTCATACCACGGAAAATAGCCGCAACA 217690 28 96.4 32 ............A............... AGTTTCAGTGTGTATCGCAGATATTGATTGCT 217750 28 96.4 32 ............A............... GTGACGGCCACATTATACCGCCACGGCATATC 217810 28 96.4 32 ............A............... ACGCTAGAATCAGCTCCGAAAGTTGATAGAGT 217870 28 96.4 32 ............A............... ACTAATTGGGTAGCGAGGCCACTTTCAATAAT 217930 28 96.4 32 ............A............... TCCCCACATTGAAATGAAGAGCATTAATAACC 217990 28 96.4 32 ............A............... ACAAGGTGTTTATGAGGCAGTCGCAACAAACC 218050 28 96.4 32 ............A............... CTACCCACGCCACGCTATTTATGTGATTTAAC 218110 28 96.4 32 ............A............... ATTGTGATCAGTGAGCAACGTACCGGGCAATA 218170 28 96.4 32 ............A............... GCCACCATCGCCCACTGCCATGTGCGTTAACT 218230 28 89.3 32 ..........G.AT.............. TTTCCCCTTGAAGAGCAAGGTACTTTAACTGC 218290 28 85.7 0 ............AA........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 97.6 32 GTTCACTGCCATGCAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTCGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCATGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 226955-227462 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGKND010000003.1 Providencia rettgeri strain 2020EL-00079 NODE_3_length_281160_cov_29.701797, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 226955 28 100.0 32 ............................ TTGGGTCACTAAATCAATCGGTAACATCATCA 227015 28 100.0 32 ............................ TTGGGTCACTAAATCAATCGGTAACATCATCA 227075 28 100.0 32 ............................ TCATCGGGCTCAACAATACGGCCATCAAATGG 227135 28 100.0 32 ............................ AATGCAAAGATGACCACGGGTTTAAATATTTC 227195 28 100.0 32 ............................ ATGAATTAATGGTGGGGTATGTCTTACTTAAA 227255 28 100.0 32 ............................ TCAATGTTTAATAGGTCGTCTTTTTCTTGATA 227315 28 100.0 32 ............................ TAATGAGTCTACCCAAACTTGGATTCGTTGTT 227375 28 100.0 32 ............................ ATAACAGCAACTGAATATTTCGACGCAAAACC 227435 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGGTAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGTATGTTATAATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : ATCAGGTGGGTTAAATCTCAACCTTGCTGCTTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGGTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATTCCTGAAAAATAGATCGGGTAACCAGATAATAATAGGGATAACTAGGAGGGGTTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATGATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAACATACTGATACCTATAGTTAAGGTGAGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //