Array 1 177184-177926 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCU01000003.1 Salmonella enterica subsp. enterica serovar Telelkebir strain 76-0298 NODE_3_length_298590_cov_3.80479, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 177184 29 100.0 33 ............................. GCGAGAATCCGCGCCGAATCAGTCGCGGTGCTG 177246 29 100.0 32 ............................. AAAACGACCTGCCCTATTGAGGAGGAGGTTCA 177307 29 100.0 33 ............................. CATGGTTTCAAGCGCTACTCCCTGCCCGGTCTC 177369 29 100.0 32 ............................. GCCGTCAGCAATTACCCTTGCCGCCTCATCAA 177430 29 100.0 32 ............................. CTGTTTAGTAGCGTGATCAAGTCGTCAATTGG 177491 29 100.0 32 ............................. ATTGTGCGGTCGGTGTTAACCAGCGTTTTCCA 177552 29 100.0 32 ............................. TTGACGAACGGAGTATTGAAGATGTCACACCT 177613 29 100.0 32 ............................. TAATAACAGGCGGTTCTATTACTACCGATTTC 177674 29 100.0 32 ............................. TCATACACAGAGTCTTCTGGAAACAAGCCTCG 177735 29 100.0 32 ............................. CCGCAACGATCGAGAGCGAACTGGACAGTAAA 177796 29 79.3 11 ..................AT...CGC.T. CTAAACATAGA T [177816] Deletion [177836] 177838 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 177899 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 13 29 97.1 30 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACACACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 194063-195068 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCU01000003.1 Salmonella enterica subsp. enterica serovar Telelkebir strain 76-0298 NODE_3_length_298590_cov_3.80479, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 194063 29 100.0 32 ............................. CGATTCAATATCAGCGGCCAATTCCGCTAACG 194124 29 100.0 32 ............................. ACGGGACTGTTAGGGATAGACCCCGGAGATTT 194185 29 100.0 32 ............................. GGTTACCCGGCGTTTCTGGCTGCGTACCGGCA 194246 29 100.0 32 ............................. TTCGAGTGTCTCGTTAAAAGGCGCGAAAATAC 194307 29 100.0 32 ............................. GTTTAATCTGATATCCCCAGCACCAAAGGAGT 194368 29 100.0 32 ............................. GAGTGGCGAAAGGGGCCGGCCTTGAAAAGTGG 194429 29 100.0 32 ............................. CTTCAGGCCAAACGTACAGCGGAGCTACCAGC 194490 29 100.0 32 ............................. ATCCAGCGCCTCGCGAGTGTTGCCAGTTTTGC 194551 29 100.0 32 ............................. CCAATTCCTCTCCGCGCTGCTGCGTGATTTTC 194612 29 100.0 32 ............................. GCACCCCCATATCTCCAGCCAACGTCTTGAAT 194673 29 100.0 32 ............................. TTGTCTTTTTTCATGTTGATGACGTCGCCCTC 194734 29 100.0 32 ............................. ATCGTTGTCCCGATCAGAATGTCGCCGCAACA 194795 29 100.0 32 ............................. TGTTGGTATACTAACTGTCGCTAAGTGTTCAA 194856 29 100.0 32 ............................. CCATCACCAACTCTCGGTGTTATGGCTCCTTG 194917 29 100.0 32 ............................. ATGATGAAATCACCCCGGAGGGGCGGGGCGAA 194978 29 100.0 32 ............................. CCTACGGGGATATAAGTAAAGAGATCCAACGA 195039 29 96.6 0 ............T................ | A [195066] ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAAAATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGTAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //