Array 1 47532-46308 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQER01000012.1 Neisseria meningitidis strain M39526 M39526_S20_cleaned_ctg_8089, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 47531 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 47465 36 97.2 30 ............A....................... ATCACTTTTAAAGGCGGCATCGGCTGGTTT 47399 36 100.0 30 .................................... AGGGGTCGTGAATGGAGTTCTTGCAGTTCG 47333 36 100.0 30 .................................... TAAGCGTTTCTTTTTTGGTCTGCTTCTGCT 47267 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 47201 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 47135 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 47069 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 47003 36 100.0 30 .................................... ACACAATCTCCGCCGTTCCAATCAAATGTG 46937 36 100.0 30 .................................... CTGATGAAGATACAACCGCACTAACTTTAC 46871 36 100.0 30 .................................... AATGATGTATATAAAATGCCGTAAAAAATG 46805 36 100.0 30 .................................... CGTCTGAAGGTTTGCCCATCTCCTGACAGG 46739 36 100.0 30 .................................... TCGATTGTCTATGAAAGCACTTGATGATTT 46673 36 100.0 30 .................................... CTCTTCATTGAAGAAGTTATAAGCCTTTGT 46607 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 46541 36 100.0 30 .................................... TGCTGAAATTATGGCAAGTATGGGGCAAAG 46475 36 100.0 30 .................................... CGGCAATGCGGCGGCTGTGTTGGTTGGCGA 46409 36 100.0 30 .................................... CGCTTGTGGTAAATCTCTATAAATATGTGA 46343 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //