Array 1 113902-111944 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIMI01000002.1 Paenibacillus thiaminolyticus NBRC 15656 PTH01S_CON000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 113901 32 100.0 34 ................................ CCCGTTATCCATATCGCGTTACGATCCGCACATG 113835 32 100.0 34 ................................ GACTAATTAACGACAGGCTCGGGTATGAGGCCGC 113769 32 100.0 34 ................................ GCCTATTTCTGCCTTCCGGTTCACCTCGCGATAT 113703 32 100.0 35 ................................ ATTGAGTAGGTGCATCGCGGTCATCGTATCCCACG 113636 32 100.0 33 ................................ ATCTCTTTGCCTGGACTGTCGTTGTCCGTGAAT 113571 32 100.0 35 ................................ GTACCCATTCGCGAGTAGTGCTGTGGCTACCCGCA 113504 32 100.0 34 ................................ TCGTCGCCTGCAACGGTCTATCTCGCGCTGTATA 113438 32 100.0 33 ................................ AATTCGACGACGCGCGAGGTATTACGCGAATCA 113373 32 100.0 36 ................................ GATATCACATGTTACGATGAGGCACCGGAGTTTCAC 113305 32 100.0 34 ................................ GTACTACCTACTTGGAATAGATTCATATGAAATC 113239 32 100.0 32 ................................ TCCCATATCCGCGAGCTATAGTCTGATCCCGC 113175 32 100.0 36 ................................ AACTTCGTGTATGACTATCAGGCAAAGGAGTTCGGG 113107 32 100.0 35 ................................ ATACCTGCGATTTCGGATTGGGCATTCGACGGTAA 113040 32 100.0 35 ................................ ATCCGGAACCTCAAGAGCACGGTCTGGATGATTAG 112973 32 100.0 34 ................................ ATCGATGCTCAAGCTATTGGCCGGAATGGATTCC 112907 32 100.0 34 ................................ TTAGCAGGAGGCTTTCGTTTTGCCACCATAGATT 112841 32 100.0 34 ................................ ATATTGAATAGGAAATAGGGTAAGCAGCTGCGAA 112775 32 100.0 34 ................................ GCTCCAGGAAGAAACTCATTGAACAGTAACCACT 112709 32 100.0 34 ................................ ATGAAGCGAGACGGGAAACCATTTCCGCTTAGGG 112643 32 100.0 35 ................................ CTATGACAGCAGCGTGGTTATTAATCCGTCCTATC 112576 32 100.0 34 ................................ ATGTATCGCAGACCCGACGCTTTCAGACCGCCCT 112510 32 100.0 37 ................................ GTCGCTACGGCAGGAACCATTATGGGCGAGTTTCAAC 112441 32 100.0 34 ................................ ATTAGGCGTAGATCTAATCAAACTGACATCCGCC 112375 32 100.0 35 ................................ CTCACGAACTTTTGCTTTTTTTCGTCCCAGACATA 112308 32 100.0 36 ................................ AAATGACCATGTGCCAACATGTTCGAATCCCCGCTG 112240 32 100.0 35 ................................ GCAATGACATCGAGAATACCCGCATGAATCTGCCG 112173 32 100.0 36 ................................ TTGCGTATATATCAATTTTCCATCTTGGTACAGTTC 112105 32 100.0 32 ................................ AATACGACGGAACGGAAGGCAGTACGCGCATC 112041 32 100.0 34 ................................ CATTAGGATTTGGATTGCTGACGCAATCCCCTGG 111975 32 78.1 0 .............A...C..T.AT.....T.C | ========== ====== ====== ====== ================================ ===================================== ================== 30 32 99.3 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : TTCTTTTTCCAGGGAAATGGGTCGGAAGGTTCACGGGTGCCGATGCTTCCGGTTCAGGTAGTAGGGTGAGGCTGTTAGTGCTTATCGAGTTAGTGTGGGTACGGAGGAAGTGCCCGTGTCGCTGTTCGCTGGTGGGGATAGACCTTGCTCACTCCTTATAAGCATTCTCCCTTCGGCTCAGAAAAGCAATCTTTTGCTTAAAACCGATGTAGAAAGTTAGTGCAACACATGTAAGCATGATATACTCAAAATCAGGGCAAAAGAAAATAACAAAATGGTTTTTATTTTTATTATTTAATAAAAAGCCCATTCTGTGGCAAGTGCGAATGTGGAGTGCATATGAAATTCCCGGGGGATTCGCACCAATTTTATTGAAATATTATCCAATTTTGTGATGGAAGTTCAATGGTTTGAAGACTATTTCGTGCTTAATCGCTCACTTGGTGTGAAATTCATGTAAGAAAATGTTTATATTATTATATATTGTGTTATTTTTCGCT # Right flank : CGATTATATTCCCTTTCTCAACTGTAAAGGACACATCTACAGGCGGTTTCGGCAACTGCTGTGGAGATGTCAGGCGGGATAGTATTGCCATAGGTTTGCAAAGGGGAAACCTCGCTTTAAAAGCCTCTCAGTCGATTTGAAAAAATTGAATATTATGGTAATGTGAAAATAAAGATTTCTTGGAAGGGTGAGGATATGGAAGCATCGTCGCTACAATATTTCACTATTGGCGACAGCATAAGACAATACAGAAATAAAGCCAATCTAACGCAAAGCCAGCTTGCCGAGTTGTCAGGCGTCAGCACAGGCTATATCTCTAAAATTGAAAATGATGAGGTAGAGCGTCCTTCATTTGAAAAAGTTTGTCACATAGCTAAGGCATTACAAATCCCTATTCATGAAATCGTCCAACCTTATCTTGAAATCAGGCAAAAATCCAATGTTTTGTTCGGAATCTTACGAGAAGTGATCAAGGAAGATGCGACGGATTTAATTGTTGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 44264-41923 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIMI01000015.1 Paenibacillus thiaminolyticus NBRC 15656 PTH01S_CON000015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 44263 32 100.0 34 ................................ ATAAATGGCGCGGACAACTTCCTCTTTGTCGTAC 44197 32 100.0 33 ................................ TTCGGTCGTCAGGCCCTCCATCGGGTTGTTTAC 44132 32 100.0 34 ................................ ACGTTAAGCCCTCCTTATTAAGAATATTTGGCTT 44066 32 100.0 34 ................................ ACGTCCATGCTGCCGCTGTGCTGGATGTCTTGCT 44000 32 100.0 36 ................................ AACGCTGGAGTACGCACGCCAACTGGTCAAAGAAAA 43932 32 100.0 34 ................................ ATTATTCGGAATTACATCCCGAGCCACTAACTGA 43866 32 100.0 36 ................................ TCGTGGTTAAGACCACACGAAAAAAAGAAGGGGACA 43798 32 100.0 32 ................................ CTCTGGCGTCATTTGCCGCTCTACAACCTTGC 43734 32 100.0 34 ................................ CGTCGATGCTCTTTGTGTCGCTGGGCATTGTGTA 43668 32 100.0 33 ................................ TTCCGGCAGGCGATCCGCCTGATGCAAAAATTA 43603 32 100.0 34 ................................ ATCTACGCGATGACACCCATTTCATTTCTATTCC 43537 32 100.0 32 ................................ GCTACGCCACACCCACGCCGTCATGTTGCTAG 43473 32 100.0 36 ................................ AGAATTTGCCACAGAACAAAATCGAAGACCTGGCAC 43405 32 100.0 35 ................................ ATTTAAAAGTGGGTGAGGGAAGACAACTAGCTGGA 43338 32 100.0 33 ................................ GTTGATAACGCTGAATCTATTATCAAGTATCAG 43273 32 100.0 33 ................................ TTAACATGGCCGAAAGGGCCGGTACCTCAATTA 43208 32 100.0 34 ................................ ACAGTTAACACAAAAGCTCAAAGGCGGGAATCAT 43142 32 100.0 34 ................................ CAGCAAGTGTAGGCATTTACGTCATCCTTCACGA 43076 32 100.0 33 ................................ TCGCGGTATATGCGGATTAGATAATCGATCGCG 43011 32 100.0 35 ................................ TGGTACTTTGATGCGCTGATCACATACATGACATT 42944 32 100.0 33 ................................ ACCATATTCTAACGATTGATACCGCAAGATACC 42879 32 100.0 35 ................................ TCTTTTGGTTTCGCCATTCCAACCACCTCGACTTT 42812 32 100.0 33 ................................ ACTTGCTGTTCATCTTGATGATCGCAAAATCGC 42747 32 100.0 35 ................................ TTGCAATCTGAAAACATACAGTGTTGGCTTACCCC 42680 32 100.0 35 ................................ ATTTATATGATGCTTGTTAGAATTATTGCGGACAG 42613 32 100.0 34 ................................ TTTATTAATTGAATCATTAATGGCAGAGGGTATT 42547 32 100.0 33 ................................ AGAATCGGATGAGCAGCTTAGAGTGCTTCCAAC 42482 32 100.0 33 ................................ CCCATGCGTGGGGCGTACATCTTCGACCACTAT 42417 32 100.0 34 ................................ AGTCCCCTGGATGGACTTTATGTAAGGGGTTTTT 42351 32 100.0 34 ................................ TTGACACAACGGTTCCCGCTACTGACACCTCTAA 42285 32 100.0 34 ................................ TCGATGCTGCTGCTTACAATCCCACGCAAGGCCT 42219 32 100.0 34 ................................ AATGCGGCGCAAAATATCAGCCATCATCATCAAC 42153 32 100.0 33 ................................ GCTAGATGCTCGTATTGATGATCAGGCAGCTTG 42088 32 100.0 33 ................................ TTCCGGCAGCCGTACGATAAGCGCAGGATGATT 42023 32 100.0 34 ................................ GAAATGCTCCGGCCAGACCTTGAGTTGATGTTCG 41957 32 84.4 0 ....................A..T.A.A...G | CCA [41932] ========== ====== ====== ====== ================================ ==================================== ================== 36 32 99.6 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CTCTGGAAGTAGGTGGTATAATTGTTGGTACTAATCACTTATGATGTCAGCACGACCAGCATTGCCGGGCAGCGCAGGTTACGTAAAGTCGCAAAGTTATGCCAAAATTATGGTCAGAGAGTGCAAAACTCTGTTTTTGAATGCAATGTAGACGCAGCTCAATTCGCCAGCTTGAAGATCCAACTTATCGATATGATTGATGAAAAGGAAGACAGCCTGCGATTTTATCAATTAGGAAATAACTACAAAAGCAAGTTGGAGCATGTCGGCGTGAAGGCATCGATCGATATGGAAGGGACGCTAATCTTTTAGTGCGAATGTGTAGTGCACATGAAATCCCTGGGGGATTCGCACCATGTTTTTTCTGTATTATGGGTAATAACCATTTTGTGGTTCGTTGCGGGAGTGAAAAATGACCTAGTTTATATTGATTCTAGAGCTAATTTGATTAATTGAATCATAGTAAGAACGAAAAATGATTGTAACAATCATTTTTCGCT # Right flank : CCCGCTTGCGAGAAAATTAACTCACAAAGTCAGCGGAGCCGCATCCCCCTATTACTGCGCCTCTGCCGCAGATTTTCCCTCTATCCTCATGCCTAACGATCACCTCCCACCTCCCTCCACCCAAAAATACAACGACAGCTTTCTCCGTACATGCACTTCTGGGCCATTGCCTACATACAATGTATCACTGCGCCGGGATTCGGCTTGCTGCGAGGAGATACCGCTAGGCGCAAGACGCAGAATAGAACGTTGTCAGACTCCTGGAGGTGGCTAGCATGACGGGTTTATTTGCTGCAATCGCCGTGTTCATCAAGCAATTGACGCTACTTGTATCCTACGTCAAGAACAATGCGTTTCCGCAACCGTTGGCGGAAGAGGATGAGATGAAGCATTTGCAGCGGATGGCGGAAGGCAATGCACAGTCGCGGAATACGCTCATTGAGCACAATCTCCGCCTGGTTGCGCACATCGTGAAGAAATTCGACAACACGGGAGAAGAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 57692-56005 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIMI01000015.1 Paenibacillus thiaminolyticus NBRC 15656 PTH01S_CON000015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 57691 32 100.0 35 ................................ CCTTTCGGGAATACGATCCTTCCCCCTGCAGCTGC 57624 32 100.0 33 ................................ GGTCATGTATCTTTTTTCGATGATCAACCTTTC 57559 32 100.0 34 ................................ CTAGTGTTTATGATTACAGTGCGAGGAGGAAGAG 57493 32 100.0 34 ................................ GATCATAACTTCCTGTGCTGTTTGGCTCATTTTG 57427 32 100.0 33 ................................ ATATAAACAACTCGCAAACAAGACCGCGTTGTT 57362 32 100.0 34 ................................ GATAATGATAAAGCCTTGGAGTAATCCGGGGCTT 57296 32 100.0 34 ................................ ATCAACGTGGACATCGGGACCGGCCAAAACCATT 57230 32 100.0 35 ................................ AAGATGGTCGGTTGGAAAAATAAAAGGGGGGTCGG 57163 32 100.0 33 ................................ CTTGCCTTGTTTGTGATAGTAGCCATCCAGCAG 57098 32 100.0 35 ................................ CTGCTTGAAGCTGACATATCCTTTCCCGCAGAGCC 57031 32 100.0 33 ................................ GAAGTATGCCGAACGTTATAAAATTCTCCAGGA 56966 32 100.0 33 ................................ ACTTGAAAGGTATATGGCAGGCTCAGGTAATAA 56901 32 100.0 34 ................................ CGTCAAGAAATAAAAGTGCCGCCCCCGAAGGAGC 56835 32 100.0 34 ................................ TATTACCTTAACTCTGATGCGTTTTTGTATTGCC 56769 32 100.0 33 ................................ ATCCAGAGGTTTAGGCTGTCCGTGATGGCCTGA 56704 32 100.0 35 ................................ GCATCTTCGTTAGGGTGGTCGGCCGGAGCTCCAGC 56637 32 100.0 33 ................................ CCATCCGGACAAACTGGTTATCGAACGGGTTCG 56572 32 100.0 34 ................................ TACGCGGACGGTAGCCGCGCACTGTGGTTCGATG 56506 32 100.0 35 ................................ CCGGGCGTGAGCATCAAACGTGGCGATGGGGCAAT 56439 32 100.0 36 ................................ CTGCGAGGGAGATTGAAATTTGGAGGTGCCAAGCAC 56371 32 100.0 34 ................................ TTGCGATCGTGTGGCTGCTGTTTATTGTCCGTGT 56305 32 96.9 35 ............A................... GGAAATGAATGGAGTGAAGAATATGGACAGTAGAA 56238 32 96.9 37 ............A................... ACCAGCGGTGGCCGGGATGACATCAGCGCAACTCAAA 56169 32 93.8 35 .........C..A................... CCCATAACCCAATGCCATTTGCCGTGCTTCGTCTT 56102 32 93.8 34 ...........TT................... CGTGAACTGTAACCTGCACGGGTCTGAATTCCTT 56036 32 87.5 0 .....T.T......A......C.......... | ========== ====== ====== ====== ================================ ===================================== ================== 26 32 98.8 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GATTGGGGGAGTTGCGGTGACCTCGTTCGAACGGGTGGAGCCTTGGGACAGGAGTCCTTTTCCGATCCTGGCGGCATGGTTCGAGGATGAGGAAGCGAGTGCGGGAACGAATGGACGGGATATTTCGGGTCGAAATGGTTCGGTAACACGTTGAGCAATGACGTTGAGCAATGAAACCCTGTACGATGTGAATGAATGCACGAAGTGATGGAGCGTTGCATATACGGACTCAACAAGCACTATATTATGAAACTGCAAAATGTGGTAACTTATAGATATAGATTTAACGATAGAGAAGCCCCTCATGTTCTAGTGCGAATGTATAGTGCACATGAATTTCCCGGGGGATTCGCACCATAGAATTTCTATATTTTAGGCAAAGTCCATTTTATGGTTTGTTGTAAAGTGAGAAATGACCTTCTTTAAATTGATTCTATAGCTAATTTGATTTGTTTACTCATAAGAAGAGCGAAAAATGATTGGAACAATCATTTTTCGCT # Right flank : GTGGACCTCTCTAAGCAGTCAAGCTCACATTGAGCGTCGCATCTTGCACCGACGCATAAAAACCATTATGAAACCAAAAAAGCATCTACCCCCTTATCAAAAGATGACGTGGGGGTGGGATGCTTGTCTTTTTTATAGAACATACGTTCCCTGACAGGTTGTTGTCACTTTCTTCAATCATAATAGAATTTAGAGTATCAATACGTAGGAAGGTGAGGATGTACGCAGCTATGAATACGACAGTTAGCGAGCAGCAACAATTGCATCCCAATGTGGTGCCATATTGGCGAATTTATCGTCTTTTCTCTGCATTGAAGCGGACTGCACTGACAAGCATTCCTATCATTGTTTGTTTGATGTGGTTGCCCCAATGGAAGTGGATTATATATGCTTCTGCGGCTTATCTTTTGCTTCATTGGAGCAAGGACTTATTCTATATCATATATGGAGTTCGCTTCAGCTATGCCCGAAGAAGTTACGTTCTGACAAGGGAAGAAATT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 808-2167 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIMI01000167.1 Paenibacillus thiaminolyticus NBRC 15656 PTH01S_CON000167, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 808 32 100.0 34 ................................ TTCTTCTCTCTATTGGCCATCTTTTCACATCCTC 874 32 100.0 35 ................................ AGACGGTAGCAGTCCAGGAAGTCCGGAAAGAATAC 941 32 100.0 32 ................................ AGTACGGGATGATAGACACAAAATCGAAAAAC 1005 32 100.0 34 ................................ TTTACATTCTTGTTTGTGCTCATTTGTTGCTCAT 1071 32 100.0 33 ................................ TGCTACGCCCATAACACCGTCGATCGCACGTTG 1136 32 100.0 34 ................................ CAAAAGAAATTCGAGCAAAAAGCATCCAAAGAAA 1202 32 100.0 33 ................................ AAACCATAAACTCATGAGCCACGCACAGCCGGC 1267 32 100.0 35 ................................ TTGCTGGTTCCCAATAGTAACGGTTCCGCGTTAGC 1334 32 100.0 33 ................................ ATGAAATAGCGGATCTGGCTCAGGCACTAACCT 1399 32 100.0 41 ................................ GGGGTGATGATCATGAGGCTGGATCAATGTATCTGTATCGG 1472 32 100.0 35 ................................ TTGTAATGGATATCGATCGTCTTGGGCGCGGCGAT 1539 32 96.9 35 .................C.............. ATGACTGCTGGCACGCGGCCGGCGGCGATATTCTC 1606 32 100.0 34 ................................ AACGGTTTGATTACGGGACTTGCGGCGTGCAAAC 1672 32 100.0 34 ................................ TTGTATTGACGGGAGGTGTACGATTGCGTTCGTA 1738 32 100.0 32 ................................ ATTGTTGATTCTCGATCCAGCGTATGTTGAAC 1802 32 100.0 36 ................................ TGATTATGGCGGCCACTTTATTAGCTGGTCACTTAA 1870 32 100.0 35 ................................ GCCCTGAATGCTATTACGTAGGTGCCCGCTGTCCC 1937 32 100.0 35 ................................ AAGACCTGGGGGCCGCTGACGGAAGACGGGCAGCC 2004 32 100.0 34 ................................ CCCAAACGCCTTATTGAGCAGTTCGAAGTTAAAT 2070 32 100.0 34 ................................ TGGACATTAGAGAAGCGCTGTGAGCCCAATATTT 2136 32 87.5 0 ..........G.........C...G.....T. | ========== ====== ====== ====== ================================ ========================================= ================== 21 32 99.3 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ACGTATCGTGGCGTTGGTGTACCGTATGGTGTTCATCGGTTTCCGTCCCCATACATGCCTCTCCTTCCTACCATCTTTTCCTTTATTATACCTGATTATAAGTGGTGGGGAATAGGGTGGAAATCTAGTCGAGTCTATGGTGTTATAACGATTCCACGGGAGTTTTCGATTTTTCTGATTCTTTTTTTGGAGCGGTAGATCTAACGCTGTGCTTGTTCAGAATAGTCTGAAATTATCCATTATTTCGATCCCTCTGTGGTATACTGAAAAAAGGAGTTTAGAACTCGTTTGAAATGGAGTGAAAATAAATGAAAAATCGGTGCGAATGTGAAGTGCACATGAAATCCCTAGGGGATTCGCACCAAAATTATTGAAATATTGTCCAATTCAGTTTGGAAAAGTTAATTAGTTTAAAGCTATTTCGAGCTAAATCTCTCATTTTCTCCGAGATTTTAGCAAAAAACTGATTTTATTGTTATATTTTATGTTATTTTTTTGCT # Right flank : TCCCAAAACCGGCCTTCGGCCTTGCGGAAAAGTTAAAAACGTTTCCGATACGCCACAAAAGCAAATTTTCTATGACAAACCCGGTTGTGATGAGGCTGTCCCATAGGCAGTGCGCAAGGATGCGGGGCAAGACGGGATATACAGATAATAGAGTGGCAGGAAGACGGCGGACGGAAAAGCGGCGGAATAGGGACGGGTTTAGACGAGGTTGTGAGACGGAGCTGGTGAAATGAAATCCTGCATGAATCAGGCTGTTGGAAAACCCCTGTTTTTTTCGGAAGGTGAGTACCTAATCGAAACTTAGCATTCAGAGCGTCATCGCCTTCTGGAGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1082-389 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIMI01000020.1 Paenibacillus thiaminolyticus NBRC 15656 PTH01S_CON000020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1081 32 100.0 33 ................................ CCGTTCTTGCTCGTATTCTGATAAGGAATAAGT 1016 32 100.0 34 ................................ AACTCTTCGAATGTCTTCGGCGCGCCTGTCGGCA 950 32 100.0 34 ................................ AAACAAGAAAAGAACGGGAACCTGGAGCGTTACG 884 32 100.0 33 ................................ CGTCGCCTCGTCCGTACTGTGGCCGAGATTTTT 819 32 100.0 35 ................................ GTTCGGAATGGAAACGTGCCCGCCACCCCGGCCGG 752 32 100.0 34 ................................ AAACAAGAAAAGAACGGGAACCTGGAGCGTTACG 686 32 100.0 34 ................................ CGGAGACGGCGGTCGCCTGGGCGCAGCAGGCATT 620 32 100.0 35 ................................ GCTCTTTGTCTGTAAATTTACGGGACGTGGATGGG 553 32 100.0 34 ................................ TGGGATTGCGTTCAGTTCCAAGGCTGGCATTTGA 487 32 100.0 34 ................................ GTCAACGAAAAACGTACCCAGGTTGAATTTTTTG 421 32 90.6 0 .........................C..G..C | G [391] ========== ====== ====== ====== ================================ =================================== ================== 11 32 99.1 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CACCACTTATCTGGTTGACCTGCTGAGTCCGTTGGAGACCCACATGAGCAGATACCTCGTTAGAGCCAGCGGTAATGATTATTGCCCATAATGTAGCCCCGTGTCGCTAGCCCCGGGCCCACAAACCGGGGCTTGTCCTCGGCCGCCCTCAAGCAAGGGACGACCCGTGAGTGCAACGACCGATACCCTATCATGCTGGCCCATGATATACTAAATGAGAGAACCAGTTCAATAATTCAACAGAACGAGTGGAAGATTCAGCCCTTTGCCCCGGTAAGGAAAGCGGAGTTGTGCAACTTGATGATTGGGGCACACCTACCGGTGCGAATGTGAAGCGCACATGAAATTCCCGGGACATTCGCACCATAATTATTACATAATTAACCAATTTAATTAGAAAGAGCTATGGGGGAATTGCAAGTTTTGGTTGTTCTATTCATTTTCTAGAGTTATTCAATCATAATTGAGTGGATTCTTGACACATTCAGTCAATTCTCGCT # Right flank : CAAAAAAAGGGCCGTTTCGCAATGAAACGGCCCGTACTATGAATCAATGGGATTGTTCCTTTAACTGCGTGATAATCTCCAATGAAAAGCCCGTGACTCTGGCGATCAATTCTGGATCCAAATCTTCGGCGAGCATTTGCTTGACAACTTCTTTTTTTGCTTCACGCTTACCTTCTCTTCTGCCTTCGCGTCTACCTTCACGCTTAATGGCATCCAAGGTTTTTTCAAGCCCCATAACCGATACGCCTCCTTTTACGTTTTGAATAAGCTCGCGCAACTGTGGTTCATTTTCCGGCAATTTCTGACTTAATATATTCGCCATCCAGGCGATTAATTGCTGTTGGCTGTCCTCTGGCAATTGCTGTATCGTATGCATCAGCTTGCCGAGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 49918-50081 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIMI01000034.1 Paenibacillus thiaminolyticus NBRC 15656 PTH01S_CON000034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 49918 32 100.0 35 ................................ TGCTGTAGTTCCCTGACTGTATCGTCTGCGTAAAA 49985 32 96.9 33 .............A.................. CTTCTCGCCCTCGTCGATGCCGATGGGGCTGAA 50050 32 96.9 0 ........................T....... | ========== ====== ====== ====== ================================ =================================== ================== 3 32 97.9 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : AAGCCGAATCTGTATGAGTTGTTCCGGCTGCATGCGCTGGCACGCGGACAGCTTGTCGAGCGGGAAGAGGAGGCGCAGACCGTATTTTCGGTCCAGCGCGGAATCACTCCGTTCGATATGGAAGAGATTATGGGATCGTTCCTGGCTTCGTAGGGGACGGCCTCTCATTCTGAAAGTCCAGCTTCCTGATTTGGATGTTGTGCGGCCACATATTTAAAAATAGTTGCTTGTGATATACTGAAAAAGAGAAAAACTCGTGGCATGAGCAAACGAGGAAGTATCAATATATTAATAATAGAATAAGAATGCTGAAAAAACAGGTGTGAATGTGAAGCTCACATGAAATCCCAGGGGGATTCGCACCAATTTTATTGAAATATTATCCAATTAAGTTAGTGGAAACTGATTGATTGAAGCTTATTCCGATCTAATTTGCTCGCTTCCTATGAATTTTCAGTGGAAAACTGATTGAATTGTTATATCTTGTGTTATTTTTCGCT # Right flank : TCGCCAACGTCCCAGACTCATCGGGACCACAACAAAGAGCAGGAAGCCTTTCGCTTCACTGCTCTTTTTTCTGTCCTAGAATTCGATTTTAAGGCTATCTCCGTTGAAATATACGCCTTCAGAACGGGTGATCGGCAGCTTTTGTTCATCCGTGAAACATCGTTTCGCCATCTCGTAAAGTGAAGTCCTGCCTAATCCTACCGTCATTTATCGGCCTCCTTAAAGGGGAGAACAATGATTGTTTCAAAATTTTTATCTCTCGCTATCGTTGTTAAATGACCGCCATATGTTTTAACCACTTACTGAATATTTAGCAATCCGACCCCATGAAGATCAGGGCTTTGCCGTGAGTTGTTTTTGTTCAGTTCAGAAATTTCCCGGCGAGAGTTGATAACGTGTATGATTAAGGAATTATTAAAGGGCACCTACAAAGTCGGAATTCTAGCCTACAATGATGCAACTTATGCCATTGACTGGTCCGGTCAAATCTCGCCTTGAGA # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //