Array 1 4162-3666 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVV01000125.1 Candidatus Kryptobacter tengchongensis strain JGI-25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 4161 31 100.0 36 ............................... CTCATCAATCATTTGTAATAGTTCATCTGCAACTTG 4094 31 96.8 35 T.............................. ACTAGCTCGTCAAGAAGCTTGAGCTCGTCTTTGGA 4028 31 100.0 35 ............................... ATACCATACCACTTAATAGGACGAACAGAACGATA 3962 31 100.0 36 ............................... ATTTCATTCTTATTTCCTTCGTTATCCCACCAGTAA 3895 31 100.0 36 ............................... CGGAACATTTTACAAATGGTTACGTTTATATCTTCC 3828 31 100.0 34 ............................... GCGAATATCCCTTCTGTTTTAATTGAGATGTAGT 3763 31 93.5 36 T..........A................... TTATCTTTTTCAACCAATTTAAGCGAGAAATCATAT 3696 31 93.5 0 G..........A................... | ========== ====== ====== ====== =============================== ==================================== ================== 8 31 98.0 36 AGTGTGAATCGTACCTGTGAGGGATTGAAAC # Left flank : ATTGAAACGCGTCCCTTCTTTAGCAAACCCGAAAATCACAGAT # Right flank : CCCAAGATAAACAAGATAATTTGCTTGCACGAGAGTATGAGTTGCTTGTATTACATAAAAACAAGATTTTAACGGATGAGGAGATTATAAAGGTTTAAAAACCGAAATAGACCAGTTTAAAGAAGTTGTATCAAGGTTGATTGAAATTTATGAGCAAGCCGTTGAAAAGGCTGAAAATAAATTAGCGAGAATAACACAAACGAAATAAAAACAAAATAATGAAGAAAAACCATGTTTGGCTGGTTCTCTTTAATTGATGTTTATTATGACCCAGATTATTATCAGGATTTCAAAGCGTGGTTGACAGGATATCCAAACATTCGCAAGCGCAGAATTCACGTAGCCTTGACTGGTATTCTTTTTCGTGTCTTTGATGAGTATTTCAGGGAGAACAACATAAGGGATACTTATCTTGCGAAACTTTATTGGGGCGAGGTTGACCCGAAGAAAAATGAATGGTTTATGGAGGCGAAGAGGGGTTTTATGGATTATGGGATATA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTGAATCGTACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 1268-2100 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVV01000128.1 Candidatus Kryptobacter tengchongensis strain JGI-25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1268 30 100.0 40 .............................. TAATTTTTACCCTTTTTTGTTTGCTACTAGTACATTGCAT 1338 30 100.0 37 .............................. GAATTCTTCGAAGCGTACAACCGTCCGACTATTAAAC 1405 30 100.0 38 .............................. GCAAATTGAGTAATCACTATAAACATATACTAATTCGT 1473 30 100.0 35 .............................. GCGAAATACCCTTGATTAAATAAGGTTCTGAGGAA 1538 30 100.0 36 .............................. AATACTGCAAAAGCTTGATAAGGTCATCAAGCTTTT 1604 30 100.0 37 .............................. TAGCTTGCATCACGGCTTTAAGCTGTGATGCAAGCTT 1671 30 100.0 36 .............................. TTCAAGACGCCCGTGTTTTCGGGCGCTTGAAAGATT 1737 30 100.0 37 .............................. TAGAAAGTAGTGCCCCATCCGTGCAACTCGGGACACT 1804 30 100.0 35 .............................. TTAATCTCAATAAGCTGGGCAGAAAAAATGCCAGA 1869 30 100.0 37 .............................. AGTTTCCCTAAACTAATTGGTAACAGATCGTATAACT 1936 30 100.0 37 .............................. TGTATGTAGTATTTTTACCCCAGCATTTCACAATCCA 2003 30 100.0 38 .............................. ATCTTACTTAAAGTCTTCTTGTTTTCTATTACTTTCTT 2071 30 96.7 0 ..........T................... | ========== ====== ====== ====== ============================== ======================================== ================== 13 30 99.7 37 GTGTGAATCGAACCTGTGAGGGATTGAAAC # Left flank : AGCCAGGAACAGGCTTTCCCCAATAGTTCCAGTTTTTAAACCTTGCGACTTTTTCCTTTGCAATTTTTTCACGCCATTTTACAAGTCTGGGACATTTGCGACAGTTTATGATTCGCTTGTTAAGTTCCTCAAGTGATCTGAAGTTCAATTTTATAATGCGTTTTTATTTTAAATTATTCGCCTTAGGTTTTTTATCAAATTTAATCAACCCGAAATTTTAGACAAAGTTTGGATAGATTTAACCAGTTTTTTATTTCATTTTAACATTCGTTATTACGTTTTCCGAGAACCTCGTTAATAAGTTAACAATGAAATTTTTCAATATCTTATTGAAACTCAATCAGTTAACCCCACTTTGACACTAACCCTGACACATTTTCAGGGAGGTTAGCGGAAAAATCAGGGGTAAAAGTTAACACAAAAGGACTTGACTTTTGGGGTAAAATTTATTATATTTAATGCGTGTGAATTGGTTTATTTGAAGTTTTGTTTTACCGTGG # Right flank : CAACGGACTATACTGCGAGTATCCTCCCTGTGCCTTCGTGTGAATCGTACCTGTCCCTAAGGGATCCTCCGAAGGCTTAAAGGGCTCCTTAGGAGAGTTCATTGGGGCCTTAGAACCTTTGGGATGAGGGATTGAAACGTTTTACTTTGGCTGCGAGGTTTGGTGTCGTTAGATTGTCCCGACGGGTCGCCCCTAATCCCCTTGGGGCTTAGCGACAATGATGGGGAAGGTGAGATTGCGTTGTTGAATCTTACTTCAAGAGGGGAATGTTTTCAAAGGGTTTTGACGCGCTGCTTTGGTTTATCTTTTTGACTCACCCCTTGCCCCTCTCTATAAATAGAGAGGGGAAATTAATTTTTTGACTCACCCCCTGGCCCCCTCTCTAAGTTTTTAGAGAGGGGGATAAGGTAGACTCATCCTCTGGTCCTCTTTCTATTTATGTAGAGAGGGGAGTTTGTGTGTGTAATTGGTGTTAAGTGTAAAAATGTTTACGATTAAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGAATCGAACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 15595-15170 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVV01000015.1 Candidatus Kryptobacter tengchongensis strain JGI-25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 15594 30 100.0 36 .............................. ATTCATAAAGTCTTCAAAATCGTAGTAGAAATAGTC 15528 30 100.0 35 .............................. AGTTTGGTAGTTTTTCCATCCGTGGTAGCTCATTT 15463 30 100.0 36 .............................. GTTGATATGACAACAATAACCGATAGCATCGTCAAA 15397 30 100.0 36 .............................. CTATCTATACCTGAAAAACCAAAATTGCCCAAATGC 15331 30 100.0 36 .............................. AACTTAATTACATCGCCTTCAAGTGCAATAGGTAAA 15265 30 100.0 36 .............................. GCGATTATCGCTCCTTCTGCGTTTGTATACGGCATC 15199 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 100.0 36 GTGAGCATTGAACCAGTGTGGAATTTAAAC # Left flank : AATGTAAGTTACAAAACTTTGATAAGACTGGAGTGTTACAGATTAATAAAACATATAATTGGAGAGGAGAAATATGAGGGTTTTAAAATTTGGTGGTAAAAAAGGAGGATAGAAATTATGTATTATATAATCGTATACGACATAGCTGAGCAAAGGGTAAATAAAGTTTTAAAATTGATGAGAAGGTATTTGAATTGGGTTCAAAATTCGGTATTTGAGGGTGAATTAAGTCCGGGACAATTTGAAGAGTTAAAGTTGAGGTTGAAAAAATTAATAAAGCAGGATAAAGATTCAATTTTGATTTATTCAATGGAGAAGAAGTGGATAGAGAGGGAAATTATAGGTTTAGAAAAGGGGGATACGAATAGAATAATTTAGTTTAAGAAAGGTGCGATAAGTTAATACTTTGTCGCAGGCTGGTTTTTTTGCATTTTCCTCTGCGACTAAACTTTAGCTTCGGAAATTTGCTTTTTTCGGTTGAAATTGCTTATTTTTAAAGG # Right flank : TGCCTTGATTTTTTAGCAAGTATTTATTATACTTTACCTGGGTAAACATTTAAATAGATTCGGGATTAAAATAAAGTAAAAAAAGAAAGTAAGGGGGGGTATAAAATGCGGGCTCAAGTAATAAGTGTAAAATTGAGCACTTTTGTTGCAATTTTCTTTATGTTAGGTTTTTCTTTAGTATTATACGGTTGTAAAAGTAAAAACTATATTAGCGGTGTTGATGAAGGAAGTGGTCCTGGAGCAAACAAGGAAACTGGAGGGAAGATTGTTTTAGGGCATGTATTTTATGTTGCACCCTATGGTAACAACTCCAATCCCGGCACTCGTGAACAGCCTTGGGCTACCCCTGGCTATGGCTCACGCCAACTGCAACCAGGGGATACTTTAGTTATTTTGGGAGGTCGTTATATCTTAAGTGAATATGAGGCTGACATCATCACACCAAGATCTGGGACACCTTCAGCATGGATAACCATTAAAGGTGAAGAAGGCAATCGTCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCATTGAACCAGTGTGGAATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.20,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 12-1680 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVV01000160.1 Candidatus Kryptobacter tengchongensis strain JGI-25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================== ================== 12 30 100.0 37 .............................. TGAAAGAAGTAAGGATTTATGGGGAGGAACTGAATTT 79 30 100.0 36 .............................. CCCAAGTCCCTTCCATAAGAAATACTATAGATGCGA 145 30 100.0 36 .............................. AACTATCCACTTGCTCCTTCACCTTCAACTGGCTCA 211 30 100.0 39 .............................. CAAGTCAAGGCGTCCCTTTAGGAAGCATACGTGCTGTAA 280 30 100.0 38 .............................. TAAACCTGATGACAGAAGAAACATCTTATTTTAATTCT 348 30 100.0 37 .............................. AGTATAAACACACCATCAAAAGTCAAGTTATGAAAGT 415 30 100.0 36 .............................. ATGTAGCCTTCAACAAAATCCCCAGTCTGCTGAAAT 481 30 100.0 39 .............................. ATGTAATAAAATTTCTTTAAGTCCATAACTTTGCTTCGT 550 30 100.0 38 .............................. GGAACTTTAATAAGACTATGAAACATTTTAACCTCTCC 618 30 100.0 40 .............................. CCCTTAAATTTTAACGATATTATACTACCATTTTGCAATA 688 30 100.0 35 .............................. TTATCTTCTTCCAAAGCTTTTATAATCTCTTCTGT 753 30 100.0 37 .............................. TGTTTAAAACCCTTTTTGTTTTTTTTACCTCAGCATT 820 30 100.0 37 .............................. ATTCCAACCAATAATTTACAATTTGCTCTTTCTTATA 887 30 100.0 36 .............................. GAAAGTTTTTCCGCTGGTGTTAATTCGTCAACTTCT 953 30 100.0 38 .............................. GAGTATGTTGGATTTTTTCTTTTCGCTTTTATTAATTT 1021 30 100.0 37 .............................. ATTGCTTTTATTGTAATGGCAATTTATCTTACCTAAA 1088 30 100.0 38 .............................. TGTATAAACGCTATCTTTATTAAATTTGATGTTTATCG 1156 30 100.0 37 .............................. AAACCATAATTCACTTTAAGATAGCTCTTTAACCATT 1223 30 100.0 38 .............................. ATTGGCATTTCCCATTCACCCTTTATCAATTTTTCTCT 1291 30 100.0 41 .............................. GGTAGTGAGATTGAAATTGTTTTCAGGAATTGCAACAACTT 1362 30 100.0 36 .............................. ATACTTTTCTGATTTTTCCCAAAGCATACAGTCCCA 1428 30 100.0 37 .............................. CAAGGTTCTTTTCTGTTTCGTGCTGTAAATATTCCGT 1495 30 80.0 56 .................A......CCCTT. GGGATGAGGGATTGAAACAGGAATTCGTTGACGCAACTAACGCAGTTTTCCTAATA CCCT [1512] 1585 30 100.0 36 .............................. GGTGTTGTAACACCTGACCTTCCTGCAAACGTCTGC 1651 30 86.7 0 .........................ATC.G | ========== ====== ====== ====== ============================== ======================================================== ================== 25 30 98.7 38 GTGTGAATCGTACCTGTGAGGGATTGAAAC # Left flank : GAGCGAGCCGGG # Right flank : GTGAAGCCACAAAGGGATTCCTTAAGGAACAATACCTCTAAAGGGATCCATAAGACCTTCGGGGGATTGCTTTGGCGACAATGACAAAGGAGTGCTTCGCTTGGGCTTGTGATGGCGGAGGAAAGAGAGATTGCTTCGTTTACGCTCGCAATGACAGAAGTGGAATTGCTTTGCTTATGCTCTTGATGACAAAGAAAAGAGATTGTCCCAATAGTATCACCTTTGTGACCACGCTTACGCTTGTCCCGAGGGTCCTATGGATTCCTTATGGGACTCCCTTGGAAGGTCTTTAAAAGCTTCAGGATATGGGAGATTGAAACCTTCAGAAGGATTGGTAAAAAACCTTACCTTCCAAAATTTGTTAAAAAAATTAAACCTACTTATATCCAATCATTTTTCCTCTCTGATGTGGGGGAACGAAATTATAAGTCAGGTGATTTTTTTGACAAGCTATAAAACTTGACTTTTTTGTCTTTCTTTGTTATATTTTATTTAGATTA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGAATCGTACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 2427-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVV01000174.1 Candidatus Kryptobacter tengchongensis strain JGI-25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 2426 30 100.0 36 .............................. GGGCAATCCTTGGCGTTTATGAAGGGGTATATTTCA 2360 30 100.0 35 .............................. ACGGCTTTTATACCCAAAGCTTTCCCAATTGCTTC 2295 30 100.0 37 .............................. TTTTTTTCCCAAGGAAATTGGTATACCTCAAAATCAT 2228 30 100.0 36 .............................. CTCTTTGCTTGTGTGAATACAAATATATTGGATATA 2162 30 100.0 39 .............................. ACAAATTTCTTATCTTTTTGATGCTTGTAATTTGTTTTA 2093 30 100.0 36 .............................. ATTGGGTTATCCCGTTACTTATTCTTCTCTTGCTCT 2027 30 100.0 38 .............................. TTCCATAACTTCCTAACCCAAAACCTCTCCATATCAAT 1959 30 100.0 33 .............................. TGATACCTTTATTAAATTTGTTTCTATTGCTCT 1896 30 100.0 36 .............................. TCGCAATAATCACACCAAGCAATATCACAATCATCA 1830 30 100.0 35 .............................. ATGAAAAAAACTATTGATGAATTTTTAAACTCAAT 1765 30 100.0 34 .............................. TAATCAACCAGTTTACCCCCGATCGGTTTCTTAC 1701 30 100.0 36 .............................. ACTGTTTTAAGCATATTTTTAAGCATTTTGACCTCC 1635 30 100.0 38 .............................. TTTTTAAAATAACTTTTTTCCTCGCACCAGTAATCATT 1567 30 96.7 37 ..........A................... TTTATATTATATCGCCCTGATAAAGATGTTGAAACAT 1500 30 96.7 38 ..........A................... ATTGAAATTATTGCAAATACATCTAAATCAGTCGCGCT 1432 30 96.7 34 ..........A................... TGCTAATCTATTGTATAAAAAATATGGCATTAAA 1368 30 96.7 35 ..........A................... ATATCTCTTTCGTCAAATTCAAATCGGTTCTCAAT 1303 30 93.3 38 ..........A.................G. TTCCCCCAAACCCCTTTATCTTCCCTATATCAACCTCG 1235 30 96.7 37 ..........A................... TTGCTACTTCCGCTTTTTGTTTTTGATTCTTCCTGTT 1168 30 96.7 37 ..........A................... TTTTTTACATTTTTGGCAAATATGCAGTTTTTTAGTG 1101 30 96.7 37 ..........A................... ATTTTATACCAGTTTTACTTGTCATATACCAAGCAAT 1034 30 96.7 36 ..........A................... GCAAAGGGAGAGTATGAGTCTATGCAGTATACCTTA 968 30 96.7 36 ..........A................... TTTCTTGCCACTTGAATAAGCATCATTCATCAACTT 902 30 96.7 38 ..........A................... TTTTCTTCAACACTTAGTCTTTCCGATGTCGGAAAGAC 834 30 96.7 36 ..........A................... CGATTGCACAATGTAAATGCTATTGGGAATTGGTGT 768 30 96.7 38 ..........A................... AAAAAGCGAAGCTTGGCTTCGTCTTCAAAATAACTCCC 700 30 96.7 37 ..........A................... TAGAATTCAAAGAAGGGTTTTTTATTTGCAAACAATA 633 30 96.7 35 ..........A................... GCGGCATTTCGTATATTTGTAGCAATACCTCGGGG 568 30 96.7 40 ..........A................... CTGTTGTTGTCTTCCTCTAACGCCTCAATAATCTGTTCGT 498 30 100.0 38 .............................. GAAGTGAAACTTTCACCCCCGAGGAGTATTTTTGCCTC 430 30 100.0 37 .............................. TGTTATCACAGGGCTAATTTTCTTTCTGCTTTTCATA 363 30 100.0 37 .............................. CTGTATTTATTAACTTTGTTTTTACTCATTTTTATTA 296 30 83.3 35 ......NNNNN................... CAATTCTGTGATTTGCGTGAGGTATACCAAACTCA TGCTA [286] 226 30 100.0 35 .............................. TTGAAATATCCTTTCAACCATAAATTTTTTGACTT 161 30 100.0 37 .............................. AATACCTTATCTATTACGTCTTTCCATCCGTTAAGAA 94 30 100.0 36 .............................. TCATTTTGGTCAAAACCGTATTTTTTAACAATTTTA 28 28 93.3 0 ............................-- | ========== ====== ====== ====== ============================== ======================================== ================== 37 30 97.8 36 GTGTGAATCGTACCTGTGAGGGATTGAAAC # Left flank : TTTAAGTGTGTGAATTGGTTTATTTAAAGTTTTGTTTTACCGTG # Right flank : A # Questionable array : NO Score: 8.99 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.84, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGAATCGTACCTGTGAGGGATTGAAAC # Alternate repeat : GTGTGAATCGAACCTGTGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 4361-1458 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVV01000122.1 Candidatus Kryptobacter tengchongensis strain JGI-25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4360 30 100.0 37 .............................. CACTTGTGGGATAGTAGTAAGGAATTAACCTATTGAC 4293 30 100.0 36 .............................. CAATACAAAATATCGCAGTATTATCGTCAATTCTAC 4227 30 100.0 38 .............................. TCCCCGAGAGGTTTTCGTTTAAGGGGCTTTATTTGATA 4159 30 100.0 37 .............................. GATGATTACAAGCTTTTATTTCAGACGACAACGCTAT 4092 30 100.0 37 .............................. AATCATTTTTTTCACCTTTTTTTGTTTTTAAAATTTC 4025 30 100.0 37 .............................. ATGTAAATTATTCGGATGACCCAGCTGACATAGGCAA 3958 30 100.0 37 .............................. AAGCGTAAAACAAATGTTGCGGTAAAGATAGTTGATT 3891 30 100.0 36 .............................. TTACATACATCTATTGTCGTCCCGCTTCCTGCCATT 3825 30 100.0 38 .............................. TTTCTTAACTCACTGATTCTGACAAGCATTTTTTCACC 3757 30 100.0 38 .............................. TTGGAAAAAAAATTTTTTGTTTTTAATTCGCTATTTCT 3689 30 96.7 36 ........................C..... AGCTTTTGCAATTCCTGTTTGTCTTTAATAAAAATA 3623 30 100.0 37 .............................. ATTTTTATGCTATATTTAAAACTTTTTGATTTATTTT 3556 30 100.0 36 .............................. GGCGTAATGTTCAAGGACATAATCAACTTTATCAGG 3490 30 100.0 38 .............................. TAGGAAATTTTTCGGGATTGGTTATAACCCGGGGCTAG 3422 30 100.0 36 .............................. ATAATCATTTTACCTCTTTTTTTTGTTTTTAAAATT 3356 30 100.0 38 .............................. CATTGTGGCTTAAAAACCTTAGAATACCCTATGAACCT 3288 30 100.0 38 .............................. AAAATTGTGGAAGATAATTACACCTGCGGGCTTTTGAA 3220 30 100.0 36 .............................. GGGTCATAGAAATCAAAACACCACGGCTTGATAGAA 3154 30 100.0 37 .............................. GTGTAGAAGTTTGGATCGTCCCATTCTACGACTCCGC 3087 30 100.0 36 .............................. AAAAAGAGCTTTCTCAACATCACAACTAAATCCTCA 3021 30 100.0 37 .............................. AGATATTTGATTTCGGGGATAATTACAGGCAAATTGA 2954 30 100.0 36 .............................. GCATTTAGCCTGTTGTTTATGTTAATTTTTTGCACG 2888 30 100.0 37 .............................. TTTAAATACTATATTTGTTTAATTTAGTTCAATCTGG 2821 30 100.0 37 .............................. CTAATTTTAAACCATGCATACACATTAATCTTTCCTA 2754 30 100.0 37 .............................. AGGGAACAGGCAAGATAACCTTGTCAATTCACAATCA 2687 30 100.0 37 .............................. ACACTTTTGGCCAAGACTTCAAATCTGGAAGGAACGA 2620 30 100.0 38 .............................. GTTTTTTCATAAGATCCTCCTTTTTTTAAATTTTTTTA 2552 30 100.0 37 .............................. TCCTCCTCATCCCACTCACAGCACCATGGTGAGATAG 2485 30 100.0 36 .............................. ATATCTTGCTATCGGCGAACTCTACGCCTTCCCATA 2419 30 100.0 36 .............................. TGATTCTCTCCCACCTATCTTTTGTTATGTCCTCTC 2353 30 100.0 36 .............................. CAACTAAAACCCGTTATAACGAAATTATTGGTCTGA 2287 30 100.0 37 .............................. CGAGAAGTTGAATTTTAGCTAAAATACTAGGATTAAC 2220 30 96.7 36 ..........A................... TAATTTCCTGAATTTCTTTTAAAATTTGCAACAGCT 2154 30 96.7 37 ..........A................... GATTGAACTAACAAACACCGAAAAAATAAACAGAATA 2087 30 96.7 37 ..........A................... GAAGGTCAAAGGGACTTTCTTGAGGCTTTGCGGATAA 2020 30 96.7 37 ..........A................... ATTGTTTTTAAATTTTGTTTTTTCATTTTAAATCTAA 1953 30 96.7 35 ..........A................... CGATATAGCCTTTTCGAGCAACGCTATTTTCTTAA 1888 30 96.7 38 ..........A................... TTCTAACCTACCAAGGGTAATAGGTAATATTTCGTATT 1820 30 96.7 36 ..........A................... TTTATAATACGTGGTGAAAACGTTATGGAACATCCT 1754 30 96.7 37 ..........A................... TAACAGTATTTTATGAAAAACGCTACAATTCCGTATC 1687 30 100.0 38 .............................. GCTTGAAAATTGCCAGACCGCGTTCGGTAAATGCGGTC 1619 30 100.0 35 .............................. GGGTGAACCAGAATACTGTAATCCCACGAGAATCC 1554 30 96.7 37 A............................. TAAGCAATGAGTATTGCATACATTGTAACTATTATTA 1487 30 96.7 0 ...............A.............. | ========== ====== ====== ====== ============================== ====================================== ================== 44 30 99.2 37 GTGTGAATCGTACCTGTGAGGGATTGAAAC # Left flank : AAGTTTGAGGGTTTTGTTTTTAATGCTTATAAGAT # Right flank : AAAATCTTCCTAAAGTTCATGGCGATTTTGTTTTTTGGTGTGAATCGTACCTGTCCCTAAGGGATCCCCTCGGGATGAGGGATTGAAACACTTTTGTTGGGGGCGTTATAAAGGTACCCCCAACGTGTGAATCGTACCTGTCCCTAAGGGATCCCCCTAAGGGGTCCTTAGAACCCTCGGGATGAGGGATTGAAACTTGTAATTGAACAATGTCTCAAGAAATGACTTGTAGTGTGAATTGAACCTGTCCCTAAGGGATTCCCCTAAGGCCCAAGTGGCTCTCCTAAGGAGTTCATAGGACCTTAGGAGGGTCCTTAGGACCTTCGGGATGAGGGATTGAAACTTGGAGTAAAAAGGTTTTGCGCAAGCCCAACGACTGTTAAAACTCGGTTTGTGCGATATGATTTCATTCAGTCTAAAGTGATTGACACATTATCAGTGGTTGCTGGCAAAGATAACTATCATCCTTGGTATTCACCAGATGGTACTAAGATTGCATT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGAATCGTACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 2592-3424 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVV01000057.1 Candidatus Kryptobacter tengchongensis strain JGI-25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2592 30 100.0 37 .............................. CAATAATGGAGGTGGGTAATGGTTGTTGATGAACTCA 2659 30 100.0 36 .............................. AAGGGACCTGGGCAAAAAACTTGATGTTTTACTTGG 2725 30 100.0 37 .............................. CAAAGGATTTGGTGTTGAAAGGGTTGTATTTAAATCA 2792 30 100.0 38 .............................. AAAACTGCAGGAATCTGGTAGTCCCACGAGTGATAACT 2860 30 100.0 38 .............................. TATTGCGGGCTTTATTTGTTTTTACTTTAAATGAAAAT 2928 30 100.0 37 .............................. ATAGTTTTTTGGTGGAAATCGATTTCCACAAGTTTTG 2995 30 100.0 37 .............................. TTGATTGTTTTCATCCCCTATTTGATAATATTTGTTT 3062 30 100.0 36 .............................. GAAGATACGATGCCATAAACAAGTGGGGATTCCTCG 3128 30 100.0 36 .............................. TTATAAAATACCCTGCCTTCATTTTAATTCTCCATT 3194 30 100.0 39 .............................. TTTTTTAAAACGAATTTTGTTTTTGATTCATCTTTTCTA 3263 30 100.0 36 .............................. GTGCTGTGATAACTTTTTCCCGGTTTCTAAATCAAT 3329 30 100.0 36 .............................. AGATTTATCCCTTCAAAAAGCTCAGGATATTTCTCT 3395 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 13 30 100.0 37 GTGTGAATCGAACCTGTGAGGGATTGAAAC # Left flank : GCAGGGAGCGTAATTTTCGTAGAAGTTTTAGATAGAAATTTGATTGGTAATTTATGGTTTAAAGTTTTCCATCCATATAAAAGTGGGAATAAAAATTTTATAGGTTCAAATCTTGTAATTTATGGAAAGTTGTAATTCTAACAATATGTATCAATTGGGCTTTTTCAGTTAAAGTGACCCTGCGTATGGAATTTCTTAGATCCATAGACAGTTTCGTAGCTTCTCTATAAACGGAGGAAAAAGGAAACGCAGGGGAAGTTTGGTATATTCGTTATTACGGTTTCCGAGAACCTCGTTAACAAGTTAACATTTGTGATTTTGAATATCTGATTGATTTACAATCACTTTCCCTTGCTCTGACGCAAATCTTGACACATTGTCAGGGAGGTCAGCGGAAAAATCAGGGGTAAAAGTTAACACAAAAGGACTTGACTTTTGGGGTAAAATTTATTATATTTAAGTGTGTGAATTGGTTTATTTAAAGTTTTGTTTTACCGTGG # Right flank : CTTAAGACTTCCTCTAAATTTAAGTGGTATGATATTACGTGTGAATCGTACCTGTCCCTAAGGGATCCCCCTAAGGCCCAAGGGGCTCTCCTAAGGAGTCCATAGGACCTTAGAAGGATCCTTAGAACCTTCGGGATGAGGGATTGAAACTTGAGAATTACACACGATCGCTGGATGAAAGCCACCTGGGTGGTGATGCAAAAACTTCGTTTGAAACATAATTTACAGAAATGGCGAGTGGAATTTTCATATGTAGACGACATGGATATAAACGCTGAGGTGGCAGCAAAACTGATCAGATTCGGGATAGACATTTGGGGTAATTTTGAGAAAATGCATCGGCGAAAATGGATATTTGATGTTGAATTCTGGTCTCTTAAAACTTCAACTACTGATTCTTAAAAATTTGCATTTCGGAAGAGTAAGAAAAAAAATATATTAAAAAATATGCCGCAGAATGTAACTCAAAAAAAAACTTCTTCTTTACAAACAACAATTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGAATCGAACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA // Array 1 5292-5783 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVV01000100.1 Candidatus Kryptobacter tengchongensis strain JGI-25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 5292 30 100.0 38 .............................. TAGGAAAATAAACATAGGGATATTCGTGGTATACCTCG 5360 30 100.0 35 .............................. TATGATCAGTCGATTCCGTTAGAACTGCTGAATCT 5425 30 100.0 36 .............................. GCGTATATGAAAGCGTTTAACTATTTTCATCCCAGA 5491 30 100.0 34 .............................. CAATTCATTTTTCCTGTAAAGTTCAATTATCCTT 5555 30 100.0 36 .............................. CCGTATCGTCCCCCTGTATAGACAACTTTTTCCCAT 5621 30 100.0 37 .............................. TATGATAGTGCCATTTTGAATTAAAATTTTTATCACG 5688 30 96.7 36 ..........A................... TCTATTACTATAACCCCATAACTTGCATACTTATCC 5754 30 96.7 0 ..........A................... | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 99.2 36 GTGTGAATCGTACCTGTGAGGGATTGAAAC # Left flank : GGGTAAATAAGGTTTGCAAACTGTTGCGTAGATATTTGCATTGGGTTCAAAATTCTGTTTTTGAGGGCGAATTGAGCGAAGGGAAGTTCGCTGAGTTGCGGTTTAAACTTTTGCAAATAATAGAGCCCGAGGTTGACTCTGTGATAATTTATACTCTTCGGGATAAGTGGAGAGGTAGGGAGGTAATCGGGTTAAACAAAAATCCAGTTGATAATTTAATTTAGTTTTAAGCTGGCTTTGTGCCAGCTTTTTTATTTCATTTTAACATTCGTTATTACGGTTTCCGAGAACCTCGTTAATAAGTTAACATTTGTGATTTTGAATATCTGATTGATTTACAATCACTTTCCCTTGCTCTGACGCAAATCTTGACACATTGTCAGGGAGGTCAGCGGAAAAATCAGGGGTAAAAGTTAACACAAAAGGACTTGACTTTTGGGGTAAAATTTATTATATTTAAGTGTGTGAATTGGTTTATTTAAAGTTTTGTTTTACCGTGG # Right flank : AATTTACTACCTTTTTTAACCACCCCTCGCAGGTTCGATTCACACTGATTGATTTTATGATTATTGATTGTGTGTT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTGAATCGTACCTGTGAGGGATTGAAAC # Alternate repeat : GTGTGAATCGAACCTGTGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA //