Array 1 943-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOAW01001059.1 Streptomyces sp. NRRL S-146 contig1059.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 942 29 100.0 32 ............................. GAACCATGATCCCGGTCAAGTGCACCGAGCTG 881 29 96.6 32 ............................C AGACGGCGGCCGTCGTCCTCGGGCAGCCGGTC 820 29 100.0 32 ............................. CCACCGTGGATCGGCTTCAACGGCGTCACCGT 759 29 100.0 32 ............................. ACCGGCAAGGATCTTTCGTACGGGTGGCAAGA 698 29 100.0 32 ............................. CGTTTGACCTGCGGTTATGTGCTGCTGCGGGT 637 29 100.0 32 ............................. AGTCCCTCCACCGTCATGGCCAGGCTGGGCGT 576 29 100.0 32 ............................. GGCACGTCCACCACGTGGGGGAGTTCCCCGAC 515 29 100.0 32 ............................. AGCAGGGGCTGCACGTGCTCAACCCGGAGCTT 454 29 100.0 32 ............................. TGCGGCGCCTGGGTCGACCCCGGCACCACGGC 393 29 100.0 32 ............................. GTGGTCCGCAACGCCGGCTACTCCGGCAGCAC 332 29 100.0 30 ............................. GCCTTCTCTCTGGCGGCGGCCACGCTCGAT 273 29 100.0 32 ............................. GACCCGAAGCGGGACATGGGCCGCTACCGGCA 212 29 96.6 32 ..................A.......... ACGTACTGGATTCGCCGGCAGGAGCGGGACTA 151 29 100.0 32 ............................. ACGAGATACCGGGCCTGCGCCCCAAGGATCTT 90 29 96.6 32 ............................C TGGAGTGTGACCTATGCCTGATCCGATCCCGC 29 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.1 32 GTCGGCCCCGCGCCCGCGGGGATCCTCCG # Left flank : CGCCTCCACCG # Right flank : C # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATCCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 338-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOAW01001411.1 Streptomyces sp. NRRL S-146 contig1411.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 337 29 100.0 32 ............................. GACTTGGGGGGCACGCCGCGGTACTGCTCGAC 276 29 100.0 32 ............................. AGGCGGTCGCCGCGCAGTGGCTCCAGTACGAG 215 29 100.0 32 ............................. ACGTTCTCCCGCTCCCCGCTCACGTGGGAGTA 154 29 96.6 32 ............................T TAGCAGTGTCGGAACGGGGCGGGAATCCCGGA 93 29 100.0 32 ............................. TGCCAGCACCCCACTCACCAGTACGGGCTGGG 32 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTCGGCCCCGCGCCCGCGGGGATCCTCCG # Left flank : CCCGCGGGGATCCTCCGTTCGGTAAGGCCGCGCGCATCGCCGAGGAGG # Right flank : GGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATCCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 455-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOAW01000040.1 Streptomyces sp. NRRL S-146 contig40.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 454 29 100.0 32 ............................. GAACGGGGTCCGCTCATGTCCGAGCTTCCCAT 393 29 100.0 32 ............................. GGCACCAGGCGCAGACGCCGCCAGAACGAGTC 332 29 100.0 32 ............................. TAGGTGGACCGTGAGCACAGCGCACGTACTGC 271 29 96.6 32 ............................C TGGCGGTGGGAGTTCCGCTGCGAAGACTTCGT 210 29 100.0 32 ............................. TCCTGCCCGGCCTTGGCGGCGTCGGCCAACCA 149 29 100.0 32 ............................. ACGTGGCAGCAGGAGCGTCGCGATCTGGTCTT 88 29 100.0 32 ............................. GCGGCGCCAGTGAGGGCGATGGTGACGACCGC 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTCGGCCCCGCGCCCGCGGGGATCCTCCG # Left flank : CCCGAAGGCACCGACTTCGAGGACTCCGAAACCAACCTCCTGTGGGATGAGCACCTCGGCGCCGTCCCGGGCGGCACCAACTACGCCAGCCACGCAGACCTGTCGGGATACGGAATGACCGACAATCACATCGCGGTCATCGGACCCGAAATCAACGAGACCGAACCCACACCATGACCGTCATCATCCTCGTCGCCGCCCCAGAAGGCCTCCGCGGACACCTCACCCGCTGGTTGGTCGAGGCCAGCGCTGGCGTGTTCGTCGGCAACCCCAGCCGCCGCATTCGTGACCGCCTCTGGGAACTCCTAGCCACGCGCATCGGCGACGGCCAGGCCATCCTCATCGAACCCGCCGCCAACGAACAAGGCTGGGCCGTCCGCACCGCAGGCCGCGACCGCTGGCAACCCGTCGACTTCGACGGACTCATCCTCTCAGCCCGCCCCAAAAAGCAACCAAACGAAAACGCCCATCCCGCTCAGTAAAGCCCCAGCTCAGCAAGT # Right flank : C # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATCCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11316-10495 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOAW01000040.1 Streptomyces sp. NRRL S-146 contig40.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 11315 28 100.0 33 ............................ CCGTATCGACGGCACGCTGCAGGAGGGCATCCA 11254 28 100.0 33 ............................ GCCGACCAAGCCGGTCGTCGACCTGTCGAAGCT 11193 28 100.0 33 ............................ GAGATCACCCGTCAGCGTCGAGCAGCAGGGAGC 11132 28 100.0 33 ............................ GGCCACCCGCTCGCGCAACCACTCGCTGCGCTT 11071 28 100.0 33 ............................ CGTGTCCGCGCCCGTCTCGATGACCGGCGTGAG 11010 28 100.0 33 ............................ GGTCAACAGGGACTTCGCCGAGGACCTCGCCAA 10949 28 100.0 33 ............................ GGCCACCCGGGGCGTGCGGCGCGCCCTGGGCGA 10888 28 100.0 33 ............................ GTACGCGACGAGCGACACCCCGGCGGCCACGAG 10827 28 100.0 34 ............................ GGACCTCGAGGTACAGGACGCCGAGCTCTACGGG 10765 28 100.0 33 ............................ GAACTGCGATAGCGCGTAGACCTCGGCGAGGAT 10704 28 100.0 33 ............................ GCCCTACCCATCCCCCTGCACACACGCCCGGGG 10643 28 96.4 33 ......................C..... TGCGAACACGCCGCCTTCGAACGGCTCCGCGAA 10582 28 96.4 33 .............T.............. GTTCTCAAGGAGGCCAAGGAGTGGGACCTGAAG 10521 27 75.0 0 ..T...T.-..G....T..TT....... | ========== ====== ====== ====== ============================ ================================== ================== 14 28 97.7 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : GTCAACCGGGACGGTGCCCGTATCGGTAAGGGGGCCGGCTACTCCGATCTGGAGTTCGCGCTGCTCACGGAGGCAGGGCTCGTGGGGGAAGAAACGTTGGTCGTCACCACCGTTCACTCACTACAGGTGATCGACGTCCCCATCCCGGTTACGGATCATGACGTGAACGTCGACCTTGTGATCACACCGGAAGAGGTCATTTCCTGCACTTCGCCGCGAAGGCCAGGAGGAATCTTCTGGGATCACCTCGATGAAAGCAAGATCGCTGAGATTCCCGCGCTGCAAGCGCGCGCGAATCGGTAGCAGTCCGTCGGAATCACCGCTGCCGAGCTGATTCGCCGGCAGGGCCTAGGGCAAGCGCGCCGACTCTGTTCTTGTGTTCCGACGCCGCCCGCGGGACGACCGGAATCGGCGGTGATATGTGCGGACGCTTCAGCCTGTGCCAGAGCGCGACTGGATGAGAACAACATCCTCTAGGGTAAAGCCCCAGCTCAGCAAGT # Right flank : ACAGCTGGACGTGCGAAATGACGACATGGTGCGTGCATTTCTAGATGGAGCTAGGCCTACGGGAGCCTCGACGCGAACGAGTTGATCAGGCAGCACAGAGGCGCTGGCGCCACAGGGCCGGTCGACCTCAGACCGCGAGGTCATTGTCGGAAGCGCCTGGCTTTCTGCTTCCGGGTCAGGAGATCTGCGATTCTGCAGGTCAGGACCTGTTGTCAGTGGCGGCATCTAGTCTCTGGTGCTCAGTTTTGGATGAGCGACCGGGAGTCCGGGTGGACGTGCAAGGCCTGAGCGAGCGTTACGAGCCGTTCGTAGTGCGGGCGCTGGAGACGTTGTGGGGGAAGTCTCGGGAGCGAGCAGGGGGCAGGACGAACCTTCTGCTGGCGCATCTCTTGGATACGGCGGCCGTTGCTGAGTTGCTGTGGGACGGCTTCCTCGCGCGGGCAACGCGGTCGGTGCTGGATGAGGTCGCGGGTGGGCCGGGCCGGGGGCGGCGGTTGTTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12-1685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOAW01000503.1 Streptomyces sp. NRRL S-146 contig503.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 12 29 100.0 32 ............................. AGGTCACCTACCGGCTCATCAACCACCGCTAC 73 29 100.0 32 ............................. ACGATGGCCTGGAGATCTGGGCGCGCGGTGAC 134 29 100.0 32 ............................. ATCACCATCACGTTCTCCTAGGAGCTCACCGT 195 29 100.0 32 ............................. CGCGTGACGGCTACCCGGGTTCTCCTCACCGT 256 29 96.6 32 ............................C AGGTCCGTGCACGTGACGGTGACGGTGGAGAC 317 29 96.6 32 ............T................ CTAGGGGACGGCAACCGGTGGCGGGAGATTGC 378 29 96.6 32 T............................ AACACGACGTCGCCGCGCCGGATCCCGGACGC 439 29 100.0 32 ............................. CAGTGATGTTCCAGCGCACCGTCCCGGTCACA 500 29 96.6 32 ............................C AACAACGAGGGCGTCGACAACTCGGCGACGCT 561 29 100.0 32 ............................. TGAGGTAGTGATCATGGCTCTCAAGCCCGAGT 622 29 93.1 33 ........A..........A......... ACCGAGGCCACGATCGCCCGGGCCGCCCTGGCT 684 29 86.2 32 ..........T...T....A....T.... GGCCAGTTCGTAATCGTGCCCGAGGACATGCT 745 29 86.2 32 ....A........TT.........T.... TCGGGTAGCCCGCTCGGAAAGGTCAGCGATAC 806 29 86.2 29 ....A.........T.......G..G... AGCCCCACGCCGTTGACCACTCCGGCCGG 864 29 82.8 32 ....A..G......TA...........T. TCCGGCATAGACGTGAGCTACCGAAAGCCTGT 925 29 82.8 33 ....C...T.....T..A..........T CACCTGGGTGGCCGGGTGCCCCGGCGGCTCGAA 987 29 86.2 32 ....C.....T...T.........T.... ACGCTACGCAATCCCGACCCCCTCAACGGCAT A [991] 1049 29 79.3 61 ...AA..A......T.........T.T.. GACCCCGACAAGATCGGCGCGGGGCGCAAGCTGTCGACCCAGGGCCCGTCCCGGGCTCGCC 1139 29 86.2 32 ..A.A.........T.........T.... GTCCGCGCGGCGCCGACACCGAACATGACGGT 1200 28 86.2 24 ....A.........T......-..T.... GTGGGCACCGTGTAGAACAGCTTC Deletion [1252] 1252 29 82.8 32 .C.......C....T.........T...C CGGCGCACGTGGCCGCCTTGGCCGGTCTCGAC GGTGGA [1259] 1319 28 79.3 32 ....AT...A....T..-.....G..... ACGGTCGTCGGTCGCAAGGCCACCGACGCAGC 1379 29 89.7 93 ..T..........AT.............. GAGGAGAACCCGCATGGTGGCGTTGTCTTCAAGTCGACCCCGCGGCTGCAGAGATGGTACGCCGACCCGGGATACCCGTACGAGAGGAGATGT 1501 28 79.3 67 ..T.A....A..-..A....A........ TCAAGAACCCCCAGCTGCGCGTCGACCTCGCGTCAGAGAAGCGGACCACCGGTACGCGCGGTCCGCG 1596 29 89.7 32 ........T.....T........G..... GGCACGGCCAAGATCGGGCTGGAGCTGTTCGG 1657 29 89.7 0 .............TT........G..... | ========== ====== ====== ====== ============================= ============================================================================================= ================== 26 29 90.5 37 GTCGGCCCCGCGCCCGCGGGGATCCTCCG # Left flank : CTCCTGAAGATG # Right flank : GGAACGCATGGAGCTGTGGTCGATCGGGCTTGACCCCAGCGACCACGAAGGCGTTCGAACAGGGCGTGGGTCTCGTCAAGTCGACCGATCAGGGCCAGTGCAACGACGAGCCAGAAGGAGCAGAAGATAGGGCTTCATCTCCCGCTACGGTCGTCTCATGCCCGGTTGCTGCCTCTAAGGTACGCCCAGACGTTCAGCCTCTGCTGTCGTGGACGACAGCCAGGCTGTCGATCCGCCAGTCCGACCCCTCTGTGACGTCCGGAGAATCGGTCCTCGGATGTGTGCCGTGCGGAGCCCCGCCTTCTTTGCCGGGAAGATATCGTTCGTCGGATGGTCACCGACATACAGGGTGACGTCCGGAGTGACCTGAGCCGCCGACAGCACTTGGTCGAAGAACTCAAGTTGAGGCTTGGCCACACCCCACTCTCCTGAGGTGAGGATGAGGTCCGCTGGTAGTCGCAGTGAGCGCAACAGCTCGCCCGCGCGAGTCGTCTGTTTGC # Questionable array : NO Score: 4.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-0.33, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATCCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-45] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //