Array 1 85061-87904 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEPX01000004.1 Aggregatibacter aphrophilus strain C2008001782 C2008001782_S20_ctg_751, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 85061 32 100.0 37 ................................ TGGCGAATTTAGTGATGTTTATAAGTCAGCGACAGCG 85130 32 100.0 34 ................................ TGTTACACCCGAACTTTAGTATGGATTACCATAC 85196 32 100.0 36 ................................ CTCATAATAAAATCAAAAGATTCTCTGAGAACACTC 85264 32 100.0 35 ................................ CTCTCGGTGAAGCGCTTAACGTTTTCATGATGTAC 85331 32 100.0 35 ................................ ACAATAAGAGAGACCCTAGGCAATGCCTAGGGTTT 85398 32 100.0 36 ................................ AAAGGGCATCGGTTTAATGAATCAACGTGGCGACTT 85466 32 100.0 34 ................................ GCGCGGATAAACAAGCACCATTACAGACTTACCT 85532 32 100.0 35 ................................ CAACCATGCCAAAGTCAAAAATAGAACGAATCACG 85599 32 100.0 35 ................................ TAAGCCACGCAAGCGCACCATCATTTCCTGACGGC 85666 32 100.0 34 ................................ TCCCTATATTAGCCCGCTTTAGCGGGCTTTTTTT 85732 32 100.0 35 ................................ AGAATCGGCGAATTGTGCGGCAGAATATTTATGCT 85799 32 100.0 35 ................................ CCCAAGTACGTGATCGGGAAATAATCGTTGTTTAT 85866 32 100.0 38 ................................ GACTATGACCGCGTCCGAACAGCTCGAAGCCATGAAAG 85936 32 100.0 35 ................................ ACGGCTGATCGGGATTGTGCGGTTGCGGTTGCTTT 86003 32 100.0 35 ................................ ACAATCTCCGGCGGACGCAATTCAATGTGAAATTT 86070 32 100.0 33 ................................ TCGGAGTTTATAGCCCCGTGAATATGGGTCTAA 86135 32 100.0 36 ................................ TTTGTATAGCCCGATCCCTTCTAACGGGTTCCCGCT 86203 32 100.0 35 ................................ AGAATCGGCGAATTGTGCGGCAGAATATTTGTGCT 86270 32 100.0 34 ................................ TGCAATTAAGCTGTCTGATAATGATAGTTTTGAT 86336 32 100.0 36 ................................ AAATTTTGTTGATGTTGTAATCGGACATGAAAAAAC 86404 32 100.0 35 ................................ AATCGGAGCTTTAAAAATGGCAAAAACAGCAGTAC 86471 32 100.0 34 ................................ TTCACTCATTGGATTTTCCTAATGTAGGTTTCAA 86537 32 100.0 36 ................................ CGCTCGTTGCGCGGATAAAAGTGCGGCCTGTTTTTG 86605 32 100.0 35 ................................ CATATAATCCAAGCTAACATACCGCTGAAAATCAG 86672 32 100.0 34 ................................ AATAAGGAGGCTTGACATGAGCAAAATCATCGAA 86738 32 100.0 33 ................................ AGCAGGGAAGAAATCACGCTTAGCCCACGTTCC 86803 32 100.0 35 ................................ GGCGTAAGTGTCAAATTTAGAATCACTTGTCATGA 86870 32 100.0 36 ................................ ATCTTCCCATCGCCAGTTGTTTAGGTATGTCATCGG 86938 32 100.0 36 ................................ CTTGGGCGATGTTTGATAGCTTTGCGCGCCACAAAG 87006 32 100.0 35 ................................ TACTGACAATGCGCCAATATAAGCTTACCTCGCAC 87073 32 100.0 35 ................................ TCAATTACAGTTGCCATATTTACCCTTTAAATTTC 87140 32 100.0 34 ................................ TTATTAATGCAATATCAAATATTTTTTTTAGAAA 87206 32 100.0 35 ................................ TAAACAAAAATAGGAGAAACATAATGAATCAAGAA 87273 32 100.0 37 ................................ TGGCCCCCTTTGATTGAATTGCATTAAGTAGCTCCAA 87342 32 100.0 36 ................................ AAGTATTGAAATTATGCCGAACTTTCGCAATAGCGG 87410 32 100.0 35 ................................ TCATCAATAAGACGTTGTGCATCTGAGAACAAGGG 87477 32 100.0 32 ................................ GCGCCGTGCTCAATCTTGGCAGTGCAGACAAA 87541 32 100.0 34 ................................ GGGTGTAACAGAACGCCCCGAACTTCTTCGAGCG 87607 32 90.6 35 ..........T..G.T................ GCCAAAGGTGACCGTGGCAAGGCACATGAAATCGC 87674 32 90.6 34 ..........T..G.T................ CAGTATTTAAGTTAAGGTGTTTAAATTTTATAAA 87740 32 93.8 35 C......T........................ AGGGTACCACACCACCCCGCCGTGCCAGCCTTTAT 87807 32 93.8 34 ..........T..A.................. TCAAAGTAGATCACAAAGGTGGTGAGCATACCGC 87873 32 96.9 0 .......................A........ | ========== ====== ====== ====== ================================ ====================================== ================== 43 32 99.2 35 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAACCATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAACGGGCAAGCGCGATTGCGTCATATCGCAAAACATTGCTTAGATTACGGCGTACGCGCGCAATATTCGGTATTTGAATGTGATGTCACGCCTGACCAATGGGTCATGTTGAAAAACAAACTGTTGGAGACCTACGACCCTACATGTGACAGCCTGCGTTTTTACCATTTAGGCAGTAAGTGGCGCAATAAAGTGGAGCATCATGGGGCAAAAGGGGCAGTGGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGCTCTCATTAAAACCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTGGATAAGTTAATTTATTTGTATAACGGCGGTATGGCCGTTATACTTACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATCTGCTGATTTTTCTTGCTTTTTTAGCTAGGGA # Right flank : CTAACGCTTATATATCAATAAGATCAAGTAAGATCGCAGCCACCTTTGGGTGAGTATATATTTTGTCTTTACGAAAAATAAGTGATGTATAAGTTTCAAGCTTTTCTGCAAAAACGTCTGGAAAATCCACCGCACTTTTCTTTCATAAAAATAAAAAGCTGAACCTCTTTCGAGATTCAGCTTTTCTTTTTGGGTTAGATCATTTTAACCGCTCTTTTTATTTATCTACGCTGAAATATTGTTACATTTTCGGAATTTCAACGCCTGAAGAGAGCAGGTCTTGAATATCCGATTTCAGTACATCAGCTTTTGGCCCATAAATGGCTTGAATGCCAGTGCCTTTGACGATAAAACCCATTGCGCCTGCTTGTTTCCAAGCCGCTGCATCGCCCACTAATTCAGGATTATGCACAGTGATACGTAAACGGGTCATACAAGCATCTACCTCGGCAATATTGTTTCGTCCGCCAAGAAGATTGATGATTTGTACCACTTGCGCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //