Array 1 32707-34937 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAHT01000078.1 Methylacidiphilum fumariolicum SolV, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 32707 37 100.0 38 ..................................... TTCTTTTTCGGCTTTCAGTTGATGAAGCCTTCCTTTAA 32782 37 100.0 39 ..................................... CCCGTAAATCACCCCACCTTTTGTTAGCATATGAGCTCT 32858 37 100.0 37 ..................................... AATTTATCCCACTCATACTTCAGAGTAACTTCTTCTT 32932 37 100.0 40 ..................................... TGCCCATGATCTCATATGATATGTTATTGAAATAATACTT 33009 37 100.0 38 ..................................... CTTCTAATCTTGATTGCTGACCGTTTTCCCCGCTTAAG 33084 37 100.0 37 ..................................... AAGTTCAAAGTAAATCCCATCCAATTTTCGATAGATA 33158 37 100.0 37 ..................................... CAAGCCCTGAGGGTGAAGACTTTTTCCTGATAAAGTC 33232 37 100.0 40 ..................................... CTGCTATTTCACCTTCACCTTCTAACTTGAACCGCTTCTC 33309 37 100.0 39 ..................................... CCTCATCTAAAGCTCCCCATTCACGATACATAGCGTTAA 33385 37 100.0 37 ..................................... TCAAGTCCCAGTCTCTTTTCGTCATATATCCTCCCTT 33459 37 100.0 39 ..................................... ATTCCTTTTCAAGTTTGCCTTTATTCTTCTCACTCACTC 33535 37 100.0 40 ..................................... ATGTTGTTATGATAATATTTCATGGGGATTTTGTGTTCCC 33612 37 100.0 35 ..................................... TTTCTCATCTTCTGGCCACTTCCATAAGTTTTTCC 33684 37 100.0 37 ..................................... ACCTTCTCTTCCTTTAATAGTCGAATATAAGCCATTA 33758 37 100.0 38 ..................................... TTAAATGTTTGGTACAGCAGGAGAAACTTCCTGCTGTA 33833 37 100.0 40 ..................................... AACTCATTCCAGTTTTGGAACTCTGGCTTACCCTCTGGTA 33910 37 100.0 42 ..................................... TTTCCTTTGTTACAGGGTCAAAATTCGACCACTGGCGAAGAA 33989 37 100.0 41 ..................................... AAATAAATGCCAATACATATCCTCCCCTAAGGGAAGATATG 34067 37 100.0 39 ..................................... TCGATTAATTCTTTCAACAAAGACTCCCAATTGTGGTCT 34143 37 100.0 38 ..................................... AAAACCAAATATTTCGACCTGCTATATTCCGGATACTC 34218 37 100.0 38 ..................................... AGATAAACTTCTTGGCTCTAGGGGATTGAACCCTAAAG 34293 37 100.0 39 ..................................... ATACCAGCGAGCATTTCTGGCCCGATAAGCATGACTTCT 34369 37 100.0 39 ..................................... AGACCATACACTATCACTTCCTCGTCAGAGTAGTTGACT 34445 37 100.0 40 ..................................... TTCAGGAGTGAGGTAGTATCTCTTCATATCCTCATCCCAA 34522 37 100.0 39 ..................................... AATGTCTCGAATCATCTTAATTTCCCAGTCTGTTAACAT 34598 37 100.0 39 ..................................... ACCAAGAAGCTTCAGGCAAGGGGAATACATATAAAATGT 34674 37 100.0 37 ..................................... AAAACTCAACCCCAATAGACTTCTTCAATGCTTCCTG 34748 37 100.0 38 ..................................... TACAATAAAGATAAAGGAGGTAAAAATGAGGGAAGATT 34823 37 100.0 41 ..................................... CCAGGAACTGGGGGCTCGTCACAATATTTTGGTAACTCATA 34901 37 91.9 0 ..........................ATG........ | ========== ====== ====== ====== ===================================== ========================================== ================== 30 37 99.7 39 GTCGGAATAATGGATGAAGCCGAAAGGCAATTGAGAC # Left flank : GGAATAAGAGTCCAGTTTAGCGTTTTCGAATGTTATCTTGAAGAATCAGAACTAGAAGAATTGTGGCAAAAGCTGCTTGCGGAAATTGATCCTAAAGAAGACAGGATTGTCGCCTATAAAATAGATGCTAGACTAGCAAAGGAGATTAGAACTGCTGGAACAATGGTGTGTTCTGAAAAAGTAATCTGCTTTTTGGTATAAACTCTATTGCAAATTGGAAGAAATTTTTATATTTACCTAGCTTGTATCTTCTACTTGCATAAAGAATGACGGTAGTTTTTTTGTGTTTAAAAATGCAAAAATGGTTTTTTAGGTATTAACACCAAACCACTAAAAAATAGCCATGCCAATACCTAAAGTTATATTATTGAATATAAATGACTTATTAAACTTTCTGTGTTTTTGGGCTAATATAAAGCATAAACTGTACCAACATAAAATTGGAATCAATGCCTATGAGGTTTTTTATTTTTTGATAATCAAGATGTTAGAAGACCGCA # Right flank : CTTTCTCTGCGAACTGGCATTCCGCTTCCTGGCAAATTTGGGGATTATAGGCATGGACGACTCCTTTCCGGCCTCTTCTTGCTGGTTATCCTGCCTTAATCTCGATGCTGCGGATCTTGATTAGGAAGATTTCTGGCCCTACCCAGACATCCTCGACCAGCATATTGCTCGCATGTCTCCGGTTTCGCTTTGTAATCCAGCCGTGATAGACGGGATCTGGCCCCAATGTCGAACGCTCGAGTACAGCCAGAGGTAGCTTTCGAGCTTTTGAGATCCCCGGAAGCTCCCGCTCTCCCAATGGGTGTGAGAAGGGAGAAGACGAGGACCATCATCCGTCAACAAGACATGCAGCTACAACCAGGTTCTCTCCTTATGACGCATAGGTCGGCAGCAGGACAAGCGGGAATGAGGTGTGCTTGCTTGATCGATTGAATGGTGCTCTTCAATCGCGATCGCTGACGAACGATCTGTTTGCGGCTATTTCCCTGTCTGTGCAGGGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAATAATGGATGAAGCCGAAAGGCAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 19712-20033 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAHT01000108.1 Methylacidiphilum fumariolicum SolV, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 19712 35 100.0 37 ................................... CTCCTGTCATTGAATTTTATGGTTATCAGTTCTAATC 19784 35 100.0 37 ................................... CTTGCCATGACTGACTTCCATGCCAGGCCTAAAATCA 19856 35 100.0 36 ................................... GTTTTCTGCCATGCTGGAAGGAATACCACCTGGATG 19927 35 100.0 36 ................................... GATTGGCCAATGTGTGGCCAGGAAGGAGGAAAGATG 19998 35 91.4 0 ............................A..G..C | G [20029] ========== ====== ====== ====== =================================== ===================================== ================== 5 35 98.3 37 GTTCCCTCAGCTGAAGAGCTGAGGCTTCGTTTAAG # Left flank : GAACCGTTACGCCGGTTGTTTTTCCGGGGCATTGGCAGCGGCGAGGTCGAAATAGGGAAGGTCGTTTACACACAATGTTGGCGGCGATGTTATCTGAGGCAGGCATTGAGGAGAATAGCGTAGAGCAATGCCAGGTGCGGCGAGAGCCATTTTTCAAGGGTTGCGAGTTGGCCCAACAAGCCAAGGCTCCACAACATCTTCTCGCTTTACCGCGAATGCATTTGGAATTAGTTTTAAAAGAAGAGGTTCAGGGGCCTATGCTCCTTGGCTTGGGACGCTTTGCTGGACTAGGTTGTTTGGCTGGTGTTAATGTTCTTTGAGAACCGTTGGGTTTGCGAGCGCTTCGATGCTCATCGAGGGTAGCAGTCGTGCTCGAACATTGCGTGACAATGAGTTGTGAAAAATTATATGTGGTTATGGCAGAAGCGATATGTAGGTGGTGACACACGCTCGCAAATGTGCAAATTGTGTGTTGAGTATCAATTGGTTGCAAGGCGGCA # Right flank : CTCATGATGACTTGTGAGCCGGTTGGTAATAGCCGGCTCATTTGTTTTGTCAGCTTTTCAAAAGCTCACCCTAGAGAAATTTTTACAGGCCCACCATATTTGGAAAAAGGAAAAAAATAGAGCACTAAGCGCCAGGATGCTCTATAACTCGATTCTTTAACCTGCTAGCTATTGATGATGACACTCGCCAAGTCGTATAATTCGATTTTAACGAATCTTCCAGATATCATGAGTCTAGTCACACCACGTTCGCAACATCTTCTAGCTTTACCGTGAATGCATTTGGAATTAGTTTTAAAAGGAGATGTTCGGTGGCCCATACTTCTTCGCTTGGGACACTTTGTTGGACTAGGTTGTATGCCACCCTTGGTCCAGGATCGATTTGTTCATCCGGCTCTTCGCCTGCCCTTTCTTTCCTGGATTTTCTCTCTTCTACTTGGCTGACCGGGTTATGTTTTTGATCGGCAAATCCTCTATAAGCCCCACCGCGTGGGCTTTGC # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTCAGCTGAAGAGCTGAGGCTTCGTTTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //