Array 1 24292-23527 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VAII01000096.1 Mannheimia haemolytica strain UGA-A6-159-1 NODE_7_length_93939_cov_203.184, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
     24291	    32	 100.0	    35	................................	AATCAATGGGGTAATTAAAAAATGAAAATTAAAAG  	
     24224	    32	 100.0	    37	................................	TATCGCATTTTATAGTTTGTTTGAGATTGTGAAAAAT	
     24155	    32	 100.0	    34	................................	ATCAGTAAACGGCTATATTTGTTTACTAGCTTAG   	
     24089	    32	 100.0	    34	................................	ACCACCTCCTCCGAGATGGTAGGCAAGGGGATTA   	
     24023	    32	 100.0	    34	................................	ACCCGCTTGCGGTAAAGCTCTAGGCTCTCACCCT   	
     23957	    32	 100.0	    35	................................	TCTTAAATCGCTATCGCTCTCTTCATCTGCGCCAA  	
     23890	    32	 100.0	    33	................................	CAATCAAGGCGGCCATTTCGGGGGTAAATTCGT    	
     23825	    32	 100.0	    35	................................	AGGGATAAGCTCTTCGCCCTCGCTGCATTGCATTA  	
     23758	    32	 100.0	    34	................................	GCTTACATCTAGACAGACGAGCAAGTGCTGAAAC   	
     23692	    32	 100.0	    35	................................	ACTGACATCGGCGTAAATGCGTGGAAGATTTTCGA  	
     23625	    32	 100.0	    35	................................	TCCGTGTTTGTGGTTATGTTGATGTACAGGCAATT  	
     23558	    32	  96.9	     0	.......................T........	|                                    	
==========	======	======	======	================================	=====================================	==================
        12	    32	  99.7	    35	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	                                     	       

# Left flank :   TTGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAGTATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTGTAAGG
# Right flank :  GGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAAA

# Questionable array : NO	 Score: 9.25
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTACGCGTGGCTGTGAATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.00,-1.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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