Array 1 636092-636392 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOR010000001.1 Bartonella sp. M0187 NODE_1_length_695344_cov_203.369458, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 636092 36 88.9 31 C.A..C........A..................... CATTGTGCTAAAGGAAACCAGCCGCGATTTG 636159 36 100.0 30 .................................... GGCACGTGCCAAACGCCGCCAGTCATTCCG 636225 36 100.0 30 .................................... TATGTGACCAGATGGGACAATGCCAGACCA 636291 36 100.0 30 .................................... CGCCCGAAACATATCCCGCGCCATTGATAC 636357 36 97.2 0 ................................T... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 97.2 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : GCTCGGCATGAAGTTCGGGGCAAAAGAAGTTTATGCCCGTTTCGGCTTTCGCAAAGTGTTGATGGCGGGTTCTCTCGTCTCGGCAATGTTTACCGCTTCCAATGGCTTGTTTTACCCCACCACGCCCTATCTGCTGATGATTATCGTGCTTTTGTTCGGCGGCTTTTTGCGCTCGCTTTTCTTCTCCGGTGTCAATGCCCTTGCCTTTTCCGATATTGCCAAAGAAGACATCAGTCAGGCAACGCCGATTGCCGCCGTTGCCCAACAGGCTTCAATGGCGCTCGGCATTGCAATTGCTGGCGCGGTTCTGGAAATTGCGAGCTCCTTTCACGACAATATATTGAAACTTGGCGATTTTCATACGGGCTTTTTCGTGGTCGGCTTCATCTCGGCACTTGCTTTCTTCATCTTCCGCACATTGCCACGTGATGCAGGCCATGCTTTGAACGAAAAAAGCAAACAGTCCACCGCACAACATTGATGAAACCGAAACATATTCG # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGATATTTTTTTTAAAAAAAATGCTGTTTTTCATTAAAATAACACCGGTAAATTTCGTTTTTTTGACGTACTTCCACGTTTTCTCTAAAAATCTAACAATATTTTCACATAAGCACACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGTAATTTCATCGTTCAGGCAAAGGTGTTTTAATCCGCAAACGTAAGCATCCTATCAAAGCGACATCGGAAATTTATTCATCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATGTTTCCGCATTCAATTATTATGGCAGTAGACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCGGAATTTTTGAGAAAGCGGAAAAAGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 637011-637179 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOR010000001.1 Bartonella sp. M0187 NODE_1_length_695344_cov_203.369458, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 637011 36 100.0 31 .................................... AAAATCTCTAACGATAACAACGCCGCCGGCA 637078 36 100.0 30 .................................... CGGATCAGCCCACACGAGCCTCACAATATC 637144 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 3 36 99.1 31 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTCTCTAAAAATCTAACAATATTTTCACATAAGCACACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGTAATTTCATCGTTCAGGCAAAGGTGTTTTAATCCGCAAACGTAAGCATCCTATCAAAGCGACATCGGAAATTTATTCATCAATCACTGAACACGCAATTCCGGATGCCGACTTTTTAAAAATCAAAATGGCTATGTTTCCGCATTCAATTATTATGGCAGTAGACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCGGAATTTTTGAGAAAGCGGAAAAAGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCAACACCAAAAAGGTGGCGCTCCGGATGGCTCGGTGTCCAAGGAAAATATACTGGAATTGGCAAATAAAATCAACAAACAGCATCATGAAGGAAGTAAAGATTGAGTATAACAAGATTTTGCTACCGTTCT # Right flank : TATTGTATTATTACATTTTTACTTATATTGATATTTTATTACAAATATTCAATGTAATATTTATAATATTATTTTTGTTATTCATGAATATTTTTTAAGTATAATTTACTAATTGATTACAGATAAATATTATCCATAATAACATTGATATTTTTTTAAAATTGAATAGTGTCTTCCAATAAAATTGATTTCAATTGGTTAAAGAGTAATCTGAAATGACTAAACGAGCAAAACTTATTTCCGGTATCTTTGCTATCGCAATCATTTTTTCTATCGTCTTGCTTTTTATTGCTTATTTATCCGGAGTCCGTGTTTTTGTTGTGCAGCCTATAGGCGCCGTTCCGGAGGGGAGAACATTAATTGTAAGTGGCGTAAGTAAATTACATGCTATCGACAGCCCCGATGCCGTTTGTGAACGTATTGGCACCGTCAATTTACTTTGCAGAGCAGGCGTTATAGCTGGAGTGGTCGATAAAGGCGAGATATTGTTGCGTCTGCCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 637822-638056 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOR010000001.1 Bartonella sp. M0187 NODE_1_length_695344_cov_203.369458, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 637822 36 97.2 30 C................................... TGACACGTAAGTGTCATGACAAGAGTATAC 637888 36 100.0 30 .................................... ACTCGGCATAATCGCACTTGCTTTGACTTA 637954 36 100.0 31 .................................... CACGCGACACTGTAGGCGTTTTCGTATCCTT 638021 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 99.3 31 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : ATTGATATTTTTTTAAAATTGAATAGTGTCTTCCAATAAAATTGATTTCAATTGGTTAAAGAGTAATCTGAAATGACTAAACGAGCAAAACTTATTTCCGGTATCTTTGCTATCGCAATCATTTTTTCTATCGTCTTGCTTTTTATTGCTTATTTATCCGGAGTCCGTGTTTTTGTTGTGCAGCCTATAGGCGCCGTTCCGGAGGGGAGAACATTAATTGTAAGTGGCGTAAGTAAATTACATGCTATCGACAGCCCCGATGCCGTTTGTGAACGTATTGGCACCGTCAATTTACTTTGCAGAGCAGGCGTTATAGCTGGAGTGGTCGATAAAGGCGAGATATTGTTGCGTCTGCCGTATAGTCAGTTTTTATATAATCTTTCGGGCGCTCCCGAAACCGAAAGGTAGATGATCATTATGAAAATCACGCTTAATTTGCGTCTTGTTATTTTTTCTGTTTCGATACCAACTGAACAGCTCTCGCTTGGCTCGTCCACTCA # Right flank : CTGATGTCCACTTAACCCTTTGTTTTATAAGGTTTAAGTGGACATTTTTTTTAAAAAAAATGCTGTTTTCCATTAAAATAACACCGGTAAATTTCGATTTTTTTGACGTGTCATCCACGTTTTCTCTAAAAATCTAACAAGATTTTCACATAAGCGCACGATCAATTTGCTTGTCCCGTAAGGCAAAAAAATATCGAAATTTCATCGTTTGGGCAAGGTTGTTGCGATCTTCTTAAAACAGGATAAGCCGGCATGTTCGGGCTTTTTTTTAGAAAGACCTCAAGCAATTTAGTGAACCGCTGTTTCGATTTTTTAAGAAAGCTTTCCGTTGTTAAAATGCTTGTGAATGCGTCGTGCTACTTAACAAGAAGTCCGCTTTGATAAAGCGGGCTTTAAGACAGCGAGTTAAACCGGTTTGGCACATCCGGTTTGCTTTTTTCAATTCGAGCGTGGCTAAAGCCGAACACGCCTGCCCCACTCGGCCTGTTTCATCCAATTGG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 4 641873-642304 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFOR010000001.1 Bartonella sp. M0187 NODE_1_length_695344_cov_203.369458, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 641873 36 100.0 30 .................................... GATGATGCTGCGGACGGCGTTGCGGCGGAA 641939 36 100.0 30 .................................... GCCTAGCAAAAGAACAGATCACTAAAGCCG 642005 36 100.0 30 .................................... AATGCATATGCTTTGTCGACAGTCAAAACA 642071 36 100.0 30 .................................... AACCACGTAATAAGTAAACTGAATAACTAA 642137 36 100.0 30 .................................... GTCTCCGACCGCAACCAAAAGTGTCAATCT 642203 36 100.0 30 .................................... TCTCGCGGGTATCAGCGGATGAATATGTGA 642269 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Left flank : TTTCTCTAAAAATCTAACAATATTTTCTCATAAGTGCACGATCAATTTGCTTGTCCCTTAAGGCAAAAAAATATCGTAATTTCATCGTTCGGGCAAAGGTGTTTTAATCCGTAAACGTAAGCATCATATCAAAGCGACATCGGAAATTTATTCCTCAATCACCGAACACGAAATTTTGGAAAACGAATTTTAAAAGTCAAAATGGCTATGTTTCCGCATTCAATTATTATGGCAGTAAACATTGGCTAAGCGATCTGCAAAAGACACGCTCGGAAGTAATATTTATAACGACTTTACTTCAAACGATGCCGGAAATTTTGAGAAAGCGGAAAAAGAAAAATTTGACGACACCGTTGGGTCGGAAACCCCCATTACCAAAAAGGTGGCGCTCCGGATGGCTCTGTGTCCAAGGAAAATATGCTGGAATTGGCAAGTAAAATCAACAAACAGCATCATGAAAAAAGTAAAGATTGAGTATAACAAGATTTTGCTACCGTTCT # Right flank : CCGATGTCCACTTAACCCTTTGTTTTATAAGGATTAAGTGGACATTTTTTTAAAAAGAAATGCCGTTTTTCATTAAAATAACACCAGTTGGGCGGGATTTTTTGACGTTTCCTACGTGCCTGATCGGAAAATCTTACGATATTTTCATATTGCTTGTCGGTAAATTGGAAAATATAGATGTTCCCTCGTTCAGGCAAGGAGGATTCGATCTTCCTGACATAAGATTCGAATTGTTCTTTTCCGTTACAGAAACGCAGATAATTCGAGAACTGGCTCATCTCGAAGCCAATATCCAACAAAAATTGTCTGAATTTCGTTGCGTCGTGGCGCTGTTTTCTTGTCTCTACCGGTAAGTCGAAAGTAACTCATATCCACATTAATCGATACCCGCTTAAATGTTTAGGACCCGATGTTGCACGCTCAAGATAGGCTGTCATAATTGTCATTTTCTCCCCATGCGTCATCAATTTGGACCGGATCGTTTTGCAAAGAAAAAATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGCGGCTTGACCGCATTTTCTAATCTGTTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //