Array 1 161695-159791 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTX010000001.1 Salmonella enterica strain S18 NODE_1_length_633265_cov_120.373071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 161694 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 161633 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 161572 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 161511 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 161450 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 161389 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 161328 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 161266 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 161205 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 161144 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 161083 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 161022 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 160961 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 160900 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 160839 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 160778 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 160717 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 160656 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 160595 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 160534 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 160472 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 160369 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 160308 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 160247 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 160186 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 160125 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 160064 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160003 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 159942 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 159881 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 159820 29 96.6 0 A............................ | A [159793] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179319-177826 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTX010000001.1 Salmonella enterica strain S18 NODE_1_length_633265_cov_120.373071, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 179318 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 179257 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 179196 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179135 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 179074 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 179013 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 178952 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 178891 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 178830 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 178769 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 178708 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 178647 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 178586 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 178525 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 178464 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 178403 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 178341 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 178280 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 178219 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 178158 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178097 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178036 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 177975 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 177914 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 177853 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //