Array 1 57-1219 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKHD01000064.1 Thermoanaerobacterium thermosaccharolyticum strain M5 NODE_106_length_1191_cov_117.576828, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 57 30 100.0 37 .............................. ACAAATAATGGATTTTAAGGGGTGATGATATGGGTAA 124 30 100.0 36 .............................. TTGTTGCTCATGCCACCACCATAATGGAGAATGTAT 190 30 100.0 37 .............................. CACAACATGACGGAAAGCCAATGCACCCCGACACAGT 257 30 100.0 36 .............................. GAAGAACAAATAATTAAGGATGCGATAAAATGGATA 323 30 100.0 36 .............................. GTGCTTTATTAAAAAGATTATTAGAATTTTTAGGGA 389 30 100.0 37 .............................. TCTAATAAACAAAGTTAGGTGTCGTCGATGCCCAGCA 456 30 100.0 37 .............................. TTTTTTACCTTTTCGATAAACTCAATCAATTCGATTG 523 30 100.0 38 .............................. TACGAAATAATAATTTCGTATAATTAGACAAGCGATAA 591 30 100.0 40 .............................. GTTTATAATATAACAATCTATATATCGAATCTGCATCATA 661 30 100.0 36 .............................. AATAATATTCAAAATCTTCATCATTATTGATTAAAT 727 30 100.0 37 .............................. TTGTTTTGTGATAAAAACTGTATATATTTTTTCTTTA 794 30 100.0 35 .............................. TCGGTATTCCCAATCTTTTAATAAAAACCGTCTTT 859 30 100.0 36 .............................. ACAAGTATGCAACAGACGAATTCTTGTCTAAACTGT 925 30 100.0 37 .............................. GGCAAAATGCCGGCTTAAAACCAACAGGAAAGGAGAA 992 30 100.0 36 .............................. ATGCATTGTATGCGTCGATACCGAGGGCCAGCCTTT 1058 30 100.0 38 .............................. GGTAAAGACGCCTTGACAAACTGGGTAATGCGATTTAT 1126 30 100.0 34 .............................. CCGTCGACGACGTATGGCTCGTCGCTGTTCCTCT 1190 30 93.3 0 CG............................ | ========== ====== ====== ====== ============================== ======================================== ================== 18 30 99.6 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : ACCTATGAGGAATTGAAACATACAAAATGTTCAATATACAAATGTTGAGAATGTAAG # Right flank : AATTTTATTTATTTTAACCTTCTTCTTTTATACTTTGTTTTTAGCCTACCTATGAGGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 55-2354 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKHD01000014.1 Thermoanaerobacterium thermosaccharolyticum strain M5 NODE_16_length_64237_cov_93.313728, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 55 30 100.0 36 .............................. AAAGAAGAAGCTAATCAGCTATACAATTTAGTGCAA 121 30 100.0 36 .............................. AGAGATGTTATAAATTGTCCAGGTTTTACTACATAA 187 30 100.0 37 .............................. GCGTTTCGCCTCTACGTGTGCCTAAAAAGAGCGTGAG 254 30 100.0 36 .............................. AAGCCAAGCGAATTAGATGCTATATTGGATGAAATA 320 30 100.0 35 .............................. ATAATTCTTCAACTAATACCATTCTAATCATTCTC 385 30 100.0 38 .............................. AGATTGTCCTTCAATGTTGACATTAAACCATTAAATGT 453 30 100.0 37 .............................. CAAAAGATAAAAGAAAGTCAGATGACTGAGCAAGAAA 520 30 100.0 37 .............................. TCTAAAATATATATTTCATCATCTTTCACACCTATTT 587 30 100.0 36 .............................. TTTATTACCGATATGGTATTAAAAATCCCGCAAAAA 653 30 100.0 39 .............................. TTTCAATTCCTCCTTTTTTATTATTTAGAGGCATATCGG 722 30 100.0 39 .............................. TTTTAAAATTCCTCCTTTTTTGTTTCTGTGGCGTCACCC 791 30 100.0 38 .............................. TTTTTAGTCTACCTATGAGGGATTTAACCCCTACATTT 859 30 100.0 36 .............................. TTTTTTAACACTCCTTTTTAATTTATTTAAGCTTAT 925 30 100.0 38 .............................. CTCTCAAAGTCGCTTTTTTCAAGGCACTGGGGGGTTGT 993 30 100.0 39 .............................. TTTGACAATCTAACTTCTAAAAATTTTAAAGTTATATTG 1062 30 100.0 38 .............................. TGAAGTTTATTCTATCGATGAATTATCGGAAAATGCGA 1130 30 100.0 35 .............................. GTTGTAGTCTTGCAACATCGGCTGTTGCAATCTCT 1195 30 100.0 35 .............................. CCTTGCCTTAAGCCTGTCCCAAAATCCAATAAGAA 1260 30 100.0 38 .............................. ATGGAGCTTTGGAATCTTTCAAGTCAACAGTTGAAACA 1328 30 100.0 36 .............................. AGTGTTTTTTGTACTATAGCTTGAAATGAAGCTATT 1394 30 100.0 36 .............................. TTGTCTGCTTTACAATCTAACGTCCAAGATGTCATT 1460 30 100.0 37 .............................. ATACCAATCCACTTGCACCGCAGGCGACGCAGGAAGT 1527 30 100.0 36 .............................. TGAAATTCTAAAGCAAGACTACAGCGATGAAAATTT 1593 30 100.0 38 .............................. AAATGAACTAGCAAAAGCATTAGGTTTAACTCAACAAG 1661 30 100.0 37 .............................. AGCGATAATGATAGAGGAAGGGACGACGAACCTACTT 1728 30 100.0 37 .............................. GGGTGTTGGTATATGCTAATTCTTTCAAATGTTCCAA 1795 30 100.0 36 .............................. CTGGTACGTTATAACTAGAACCTATTTCAAGTGCTT 1861 30 100.0 36 .............................. AATTTAGCCATGAGTGCTAATCCTATTGCGCTAGTT 1927 30 100.0 35 .............................. ATAATTTTCTTGCTGCTTTTCTTTTTGATTGCATA 1992 30 100.0 36 .............................. TTCTAATACTCAAAATGCAAAAGCTCTAGCTGTTAA 2058 30 100.0 36 .............................. AGTGCTTTTCTTGTTTCCTCAAAGACTCTTTCAGCA 2124 30 100.0 36 .............................. ATATTTTTCTGTTCCCAAAACCGTAAAAAATAATAC 2190 30 100.0 37 .............................. ACTAAAAAATTGATTGAAAAACAGTATCCATGTAATT 2257 30 100.0 38 .............................. GGTGATAGCATTGCAGAACGGGTTTGAGGGGCAGCTGT 2325 30 86.7 0 .................A.A.G...T.... | ========== ====== ====== ====== ============================== ======================================= ================== 35 30 99.6 37 GTTTTTAGCCTACCTATCAGGAATTGAAAC # Left flank : CCTATCAGGAATTGAAACCCGTATGCACGTAGGCAGCATGAACATCTTGAGTATG # Right flank : CCTAAGTTATAAGTTAATTGGAGTATTTTTATGTTTGAATTCATAAAATTGCAAAGAACAATGTGCTATGGACCTTATCCCGTTTATAATGTGACAATAGATAAAGGCGGCAATGTAAAGTATTATGGGGAAATGTTTGTCTATAAAAGTGGAGAACATCACTGGAGAATAACAGAGAAGAAGGTAAAGCAATTAAATGATGTAATTGAGGACTTTGGCTTTAGATCTTTTGTATATATATCAAGTTGAAGAGAAAAATGAAGAGCCATCAAATAGATATATAGTTATCACTGCTTCAAAAGAAGAAGCCATAGAGCTAGTAGAGAAAGATTGTAATAGGCAAGAATTACTGGAATGGAGTGTAGAGAAGATAGGAATTGCTACAAATCATTATAATTGCTCAGTTATACTTATGAAAGGTATCTAAAATTGATGAGCGCATTAGATATACTTCATGGTCATACGATAAAAAATCAGTTACACTGCTGGGAATTGAAATG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATCAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 69975-74906 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKHD01000009.1 Thermoanaerobacterium thermosaccharolyticum strain M5 NODE_11_length_74882_cov_110.632820, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 69975 30 100.0 35 .............................. CATAATAATCATCATCTATTTTCTCAACATTTTCA 70040 30 100.0 37 .............................. GACCAATATCCACTAGACCCTTCTTTGCCAGATATTG 70107 30 100.0 38 .............................. TCTAAAGATTATGAAGTAATACTTATAAAGCAGACATA 70175 30 100.0 38 .............................. CGCAGGATACGCTAAAATCATATTTTGATAAAGGCTGG 70243 30 100.0 38 .............................. CAGGCCTTCAAGCAACGGTTACGCTTGAAAAATCGGAG 70311 30 100.0 36 .............................. TATATTCCTGCTGCTGCGAACACATCACCTCCATAA 70377 30 100.0 36 .............................. ATATGTATGGTACAACAATACGAGAAGATGCAGACA 70443 30 100.0 37 .............................. CTTATCAAAGTGCAGTTGCCAGTTACAAGTGGGAATG 70510 30 100.0 38 .............................. AGGCATTCAGCATGATAAAATTTGTCGTCTTCTATTTC 70578 30 100.0 36 .............................. CCATCTGGCAATGATTTATTTAAAAAAATTTTCTCA 70644 30 100.0 37 .............................. CACTTTGTCGTTCTTCAATAGGATCAGAAAACCAACG 70711 30 100.0 39 .............................. AGGCTCGAAATAGTGCCATATAATCAATTTCATATAAAC 70780 30 100.0 36 .............................. TCTGTCCTTTCATTATCAGTCAAATCCCATCTCAAT 70846 30 100.0 39 .............................. TAAAATACAAATTTGGGTGGTGGTAATAATGAATCGTGT 70915 30 100.0 37 .............................. ATGTTTGATTGAATTGTTGTAAATTATCATCTCTATC 70982 30 100.0 37 .............................. CAACATGATGGATGAATACAATAACATGGGCTATCTT 71049 30 100.0 37 .............................. TGTCGTTGTATTCTGTTTCTGTAATCAGAATACCCTC 71116 30 100.0 37 .............................. GGATCTGAAATAAAAGGTTTTGTTCAAAGAACACCAA 71183 30 100.0 37 .............................. TAAAGAAGTAAAGGGGAGGCTGCGCTAATGATAAAAG 71250 30 100.0 36 .............................. ATCTAAAAATCCCTTTGCATATACATCACCAATTAC 71316 30 100.0 35 .............................. AAAAAAATATAAAAAGGTATTGACATTGTACTACA 71381 30 100.0 37 .............................. TTGCAGAAAATCCAAACACAATGAGTATTCACCTTTC 71448 30 100.0 37 .............................. TAGCTAATCCACAAACATTTTCACAGGGTACAACACA 71515 30 100.0 38 .............................. CTGTGTTGGATGAAACTACGATGAATTCAATTATATCT 71583 30 100.0 37 .............................. TGTGAATTGCCCCTGCTGCTGTGGCTGCAACCTGCAG 71650 30 100.0 39 .............................. AGTTGTAATAAAATCTGATTTATATTATTTGGATCTACT 71719 30 100.0 35 .............................. ATGCAATTACTTTGGTAATGTCAAATTCACTTACA 71784 30 100.0 38 .............................. TCAGACAAAATAAGTCAATTGCAACAAAATACCGCTGC 71852 30 100.0 37 .............................. TGTTTAAAACAGTTGCTCAAAAGTTTGTGATAGGAGG 71919 30 100.0 37 .............................. AATCGAATCAGGATTCGATAGAAAAAGTCAGCAAAAG 71986 30 100.0 38 .............................. CAGTGTTCCAAGACCCAGTAAGTAGTAACATCATCACT 72054 30 100.0 38 .............................. TTTTCATTATACTGCTTGAACTAAATTTGTAATTCCTG 72122 30 100.0 38 .............................. ATTTGAAGTCTTATTTGATTAATAAGAGTATATGGTGC 72190 30 100.0 35 .............................. GGATTAAACGTTGTATGGAATTCAGCGACAGGAAC 72255 30 100.0 38 .............................. AAGGGATAGTCAACAGGAAAATAAAATTTGATGAAGGA 72323 30 100.0 37 .............................. ATATCTGCCGCCTTTGCATGCAAACTTCCCGTAGCAT 72390 30 100.0 36 .............................. CAGGAATTGGTTGATAATGCAAGTCAAAAAGGCTCA 72456 30 100.0 40 .............................. TGACAAACAGCCAAAAGACATTTCAATAAAGCTTGAAAAG 72526 30 100.0 38 .............................. TTTCAGGTACGCCAAAGCCCACACTATTAAAACCTGGA 72594 30 100.0 36 .............................. GTAAGTTCCAGCTCTACCCGGCCAATGGTGGTCTGA 72660 30 100.0 37 .............................. CTGTGGGCGGTGTAACAAAATCTTGCGGAATTGAAAA 72727 30 100.0 36 .............................. TTTTCGACTATGAACAACCCTCCGATTGCTTAAAAG 72793 30 100.0 40 .............................. AATGGTAGCGCATGGAAAGTAATGGGATTGGATAATGGAT 72863 30 100.0 38 .............................. ATAACTTTTTTGTCAATTTCTACCGTTGGCTCTTCAAA 72931 30 100.0 38 .............................. CATATCAATACGATATAGATGTAATAACAATGGCAGGG 72999 30 100.0 38 .............................. CAACCCAAGTCATTTTACCACCCCACCGTCCTGCAACA 73067 30 100.0 37 .............................. TTGTATCTGTTAATTGAGATGAAAAATTTGAACTAAA 73134 30 100.0 38 .............................. AGAAATATAAAAGTAAAATAAGGTGGTGTTATATATGG 73202 30 100.0 39 .............................. ACAATTTGTATTGCTTCTTCTTTATGCTTTTTGTATGCC 73271 30 100.0 36 .............................. ATAGAAAGGACGGATGCAGATGGATAATGCAGTTAT 73337 30 100.0 36 .............................. TATACAAATATGGCGCAGAACCCGATCCAGAATTAG 73403 30 100.0 35 .............................. TACTTTAGAAGACTAAGCAGGGCAAGGGTCTTAGG 73468 30 100.0 39 .............................. TACGGTTATCAATGGTGACAGCACAGTTGATTCTAAGGC 73537 30 100.0 38 .............................. CATATTTGACTGATAGAGCTATAATAAACATAGTTGAA 73605 30 100.0 38 .............................. TGGTTCGAGTCCATACGCCGAAGCCAAGAAAATATAGA 73673 30 100.0 38 .............................. ACATATCTCTCTAGCATCCTTGCAGTTTTAACGACATC 73741 30 100.0 35 .............................. TCCGGCGCCAGAAACGAGCCGAATTTAACGCCTCA 73806 30 100.0 36 .............................. TAGATACTGCGACATGGGGATTAGAAATATGGGAAA 73872 30 100.0 38 .............................. ATAGTATGGGCAAATAGATAGAGTTTATTGCTAAACTC 73940 30 100.0 39 .............................. AAACGTGTATTCATCCAATATTCAACATAAGCAAAAGTC 74009 30 100.0 38 .............................. CATTGTCAAAATCTTGTATATCATCTACAAGCTGTAAC 74077 30 100.0 36 .............................. GAATCAAAGCTCTTGATATAGGAAAAGGACATAAAA 74143 30 100.0 36 .............................. TCCCTTGCTTTGCATGTTCCGCATTTTATGTGCTGT 74209 30 100.0 36 .............................. ATGAATTTTGAAGATGGCAAAGCTATATATAGACCA 74275 30 100.0 37 .............................. ATGTTGTATTTTCCGCAAATGATAATTTTGGTAATAC 74342 30 100.0 36 .............................. AAACTTCTTTTTGTTTTCTTTGAAATTCAGTTTCTT 74408 30 100.0 36 .............................. TTGTCAAAACTTCCAATATAGCAAATTAAAATCTAA 74474 30 100.0 39 .............................. TTCAAATTGTATATATCTTGCCATTTAGAACCATTACCA 74543 30 100.0 36 .............................. CAGCACTTTGCAGAACTATTCCTTTGCAAAACTGCA 74609 30 100.0 34 .............................. ACAGAAGCCGATTGCTGGGGTCCGCACCATGAAG 74673 30 100.0 38 .............................. AAACTGATACATAAGAACCATCACATTGGTGTCCTGCT 74741 30 100.0 40 .............................. TAGTGGACGTGCAGGGTGGGCTAGTCAATATACATCACAA 74811 30 96.7 36 .................C............ TAAGCAAATTACTGTTTTCGTCTTCTGCAAGCCAGT 74877 30 93.3 0 .....C...........C............ | ========== ====== ====== ====== ============================== ======================================== ================== 74 30 99.9 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : AACTATATAAACTTGAAAAACATTTAATTGAGGAACAAGAATATAAGCCATTTATAGCGAGGTGGTAGATATTATTTAAGATATTATGGACATTATACTAAATGTTGCTAAAATTAACTTGGGAAATGATTTAAGGGAATAACAATGTTCATAATATTGGCATACGATATTGGTGAAATAAGAATAGCAAAAGTATTAAAAACATGCAGAAAAATATTAAAATTGAGCACAAACTTTTGCGCTTGAATGTGTAATACAGGTATAAATTTTATTAAATTAAAAACTGTATTGAAAATAAAAATGTAAATATTCGGATAAAAGTATGTCGTCGAACCTAGATAACGTGAAAACAACCTAAGATCGACGACATATTTTTGTGACACGAATTTTCTTGATATTTATAGATTTTTGTTATATCATAATAATGTAAATGAGAAAAGCAAATTAAAATTATCAATTACAAAAAATCTTGAAATTGTGATTTTATGCAAGTAATACGA # Right flank : CCGTATGCACGTAGGCAGCATGAACATCTTGAGTATGTTTTTAGCCTACCTATCAGGAATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 8296-7989 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKHD01000031.1 Thermoanaerobacterium thermosaccharolyticum strain M5 NODE_35_length_8265_cov_83.339020, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================= ================== 8295 30 100.0 38 .............................. TCTCAAAAGTTTCCTTTTTCTATTCCCTGGGATATTAA 8227 30 100.0 113 .............................. TTCTATTTTTTCTTTTTCTATTTCTATATCTATTTCATTAAAAGATTCTATTTCAGCCAACTCCTTTATTATATCTCCTACAGGAGATGATAATAAAGTTTTTAATTTTTCAT 8084 30 100.0 36 .............................. TAGCTCAGTTCTAAATAGACCACATTAAAGTCCTTT 8018 30 80.0 0 .G...................G...T.TTT | ========== ====== ====== ====== ============================== ================================================================================================================= ================== 4 30 95.0 63 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : TACCTATGAGGAATTGAAACAATTTTATTTATTTTAACCTTCTTCTTTTATACTT # Right flank : GCATATAGTGAGGTGAGAAGAAAAATGAGTGAAATTATTTATTATGGTGCATATGGGTCAAATTTGCTAAGAGAAAGGTTTCTTATATACATAAAAGGTGGAGAATATAGAGGCAAAGAATATAGAGGATGCAGAGATAAAACAGAACCAATAGATATGGGCTGGATATATGTTCCTTACAGGCTTTATTTTGCAAGATGTTCTCCGCGATGGGAAAATAAAGGTGTAGCTTTCTTATTTGACGAGAAAGAAGAAAATCCCGAGTACTATTCAGTCATTAGACTGTGGAAGATAACAGAAGCGCAGTTTTATGAAATCCAAAGACAAGAAGGTGGTTGGTATAACCTTATTTTAGAACTTGGTGAAAAAGATGGAATTGAAATTAAAACGATAACTGGACGCTGGAGAAATAAAAAACAAGCTCCATCAAAAGAATATTTAGAAGTCATTAAGAAAGGATTAAAAGAAACGACCAATTGGTATGATGAAAGAATAGAGGC # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:-3, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 10178-10541 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKHD01000033.1 Thermoanaerobacterium thermosaccharolyticum strain M5 NODE_37_length_12924_cov_56.947151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 10178 30 100.0 36 .............................. ATGAGAGAAGTAGATCTTGCAATACAAGCATACCAA 10244 30 100.0 38 .............................. TAAAAGGGTATGGTTTTGGGTTGTTGCTATTATAGCAA 10312 30 100.0 37 .............................. TATGCAAACGTGGAAATAATTTCTGCAGTTTGATCGG 10379 30 100.0 36 .............................. GCATGATATTTGGCGGCCATAAGCAAGAGCAACCAA 10445 30 100.0 37 .............................. GCCTGTTCCTGTGCTACTATCTGCGGTTGTTTTACAT 10512 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 100.0 37 GTTTTTAGTCTACCTATGAGGAATTGAAAC # Left flank : TAAAATAATTTAACAAAAGTTTATCTGAATGAAATTTTTTTACCAAATATTTAGATCTATGTCAATAGAGTAGACACAAAAAGTTTAACTGCTTATACCAACCACAAGTACAGCTTCATACACTGCTTGCGGAGTCATGTAATCAGGCAGAGAGGTTTCACGAGAATTTGAAATAAGTTGTCCTACTTTTTATAAATATATGAATCGTAAAGATGGTACAGAAAAATGTGTGAATTAAAAGTAGAACAAAAGAAGGATTTTGCGGAATTATGTAGAATATATTATCTAATGATAAACCAAAAATAAATGCTGTTTAAACCAATAAATTGTCATCTACCTTAAGTAGTGTAAAAATTACAGGAGATCGACGACATTGTTATATTTTATTTTGCAGAAATTTGTTTGAAATACTGTGGTTTTATAACATTATCAAGACGAAAGGTTGACTGCTATTTTAGAATTTAAATAAAGCTTATGGCTTTATAGAAGCATTTGGATGT # Right flank : CACTATCCTTAATATCCGTTGTCTATGTTACCCTAAAAGTAGTTCTTTCCACTTAGTGTATAATTTTAGTAGGCAGCAAAAAATAGAAAAAGGAAGGTACCAAAAAAATACCTTCCCTTCACATGAATCATCCGCTATAATGTTTAATATAGAAAAAAAGACCAAACGTTATAGAGGTGATTACATGTTCGAATTAAGTTTAAACCAAAATGAAATAAATTTCAAGGATTTAGAAGCGAAAATTTATAAATTTGTTTGCGACGAAGCTTGTGAACTAATAGCTCAAATCCTTACGATGATAGATGATATGCTACTAGAAAAAAGAGACAAGAAAGAATATAGATGTAAAGGCAAAAGACACACAAATATAAAGACGGTCATGGGCACTGTTGAATTTGATAAAAGAATTTATGAACATACAAACAGTGAGGGAAAAAAAGAATATATTTTTCTTTTAGACAAATATTTAAAAATGGATACAATAGGGCATATATCAACAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGTCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 7455-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKHD01000024.1 Thermoanaerobacterium thermosaccharolyticum strain M5 NODE_27_length_87582_cov_92.849464, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 7454 30 100.0 37 .............................. GATTTAGGAAGGGGTCAAACAATAAATATAATTACTA 7387 30 100.0 36 .............................. TCAGCAGGCAGCTAGGAAACTTGAAATTAACATAGC 7321 30 100.0 40 .............................. AGAAAAGAAAAAGGTATTAGTTTGGAAAAATTGGCTAATA 7251 30 100.0 36 .............................. CTAATGCAGAAGCATTACGTTTTACGCAAGACACTT 7185 30 100.0 37 .............................. CTGCAAGATCATTTGCACCATTTGTAGATGAATCTGA 7118 30 100.0 37 .............................. CAGCTAAGAGTGCTGCTACTATGATGTGTTTAGCAGC 7051 30 100.0 37 .............................. TCCAACCTTGTCCACCTATCCAATAGCGTATCTTGCA 6984 30 100.0 39 .............................. CTGTTTACTTTATCGGACATTGTGCTATAATATAGGTAT 6915 30 100.0 37 .............................. TTAAAAACAAGTATCACATACCGTATCAAATTGTTAA 6848 30 100.0 39 .............................. GGCTGTCGTAGAGGCGAAACTCTGGGCTTGGAATGGAAA 6779 30 100.0 38 .............................. ACGCAACAAGAAGTAGATGAAATGCAAAAACAAGTTGA 6711 30 100.0 37 .............................. CCTTCACCTGTGGATGAATATACAACATATAAATTGA 6644 30 100.0 36 .............................. CAGTACTTAATGCTCCGCCTGCTACTTTAAGCCCTA 6578 30 100.0 37 .............................. AAAGATGAATTTGAAGCAGCTGCAGAAGAAGATATAA 6511 30 100.0 36 .............................. TTACAAACGCTTGATACAATGTTGACGGATAATCTA 6445 30 100.0 36 .............................. GGTGATGTGTCACAGGGCGACAGAGAACGGTTCAAT 6379 30 100.0 37 .............................. TCAGACAAAATAAGTCAATTGCAACAAAATACCGCTG 6312 30 100.0 38 .............................. CTTTTTCTTCTTTATTACCAAATAAACCCATAATTAAC 6244 30 100.0 37 .............................. CTTGTGGAACACAAACGAGGGGTTTAGAAATGCAATC 6177 30 100.0 39 .............................. TGTGACTTTATATTTTGATACAAATAAAATACGCCCCTA 6108 30 100.0 38 .............................. ATGATTTTTTAAATTATTTTAGCACAATAAAAAACAGG 6040 30 100.0 36 .............................. TCCATACAATTAAAGAGTATGGATTACCGAAAATAA 5974 30 100.0 36 .............................. TTTTTTCTTGTAATTGCTTTAAACCATTAGGTTCAA 5908 30 100.0 38 .............................. ATTTTAGTGAAATAGATGGGTTGTTGTATTCTATGGGT 5840 30 100.0 38 .............................. TATTTATTTTCCCTATGTAACTCTATAAAGTAAGCTAG 5772 30 100.0 36 .............................. AAGAATACTTTAGTATCTTTTCTATTTCTTTGCGAA 5706 30 100.0 38 .............................. GACTATAAAAAGATATATAAAATATTTAGACCAATATC 5638 30 100.0 37 .............................. TTAAAAAATCTTTTACCTTATCTATTGGTTATAAAAG 5571 30 100.0 37 .............................. ATAAAATCAGCAAACCAGCTTGAAACCGTGTCGGGGT 5504 30 100.0 36 .............................. GTACAATTGCCAACATATAAAACCTGCATAAATAAA 5438 30 100.0 37 .............................. TTGGGTAGGTGCTAAGTGGGATCCGATAGCTAATAAG 5371 30 100.0 37 .............................. ATGTATCTATTTGTGATATTTGAGGATATATAGTTCC 5304 30 100.0 37 .............................. AAATAAGGGAAGGAAAACACTGTTCCTACGAAAATGG 5237 30 100.0 36 .............................. TCATAACCCCAGGGATAATCAAAATCTCTAAGCCAA 5171 30 100.0 36 .............................. CGTGGTCTTTCGATAAATTCCATTGGATTTTCTTTA 5105 30 100.0 36 .............................. TGCAGAGGAATTAAAGAAAATATATACAGAGTAAAG 5039 30 100.0 38 .............................. TTTTACGTGCTAATTTTTTCCCTTTTGTTTTGATCCAG 4971 30 100.0 37 .............................. TGGCTAAATTTAATGCCCACTGTGCCGCTGCTGCTAT 4904 30 100.0 37 .............................. GCTAAACTGTCTGCGCCTTTAGCACCTCCTGAAATTA 4837 30 100.0 36 .............................. AACAATGCTTTTGTGAATACATACAAAAACCGTCTA 4771 30 100.0 37 .............................. TAAGAAATAGAATCATGCGTATAGCCGAATTGTATGA 4704 30 100.0 36 .............................. AGCTTAGTACATGGTTTAATAACGAAGGTGTACCTA 4638 30 100.0 37 .............................. AAATTGCAAACAAAGTAGCAGATACTTTAATGGAAAG 4571 30 100.0 36 .............................. GCTGACTCGACAGGGTCAAAACCTACTTCTTGAAGA 4505 30 100.0 36 .............................. AAACATTATGCAGAGGAATTAAAAAAGATTTATACA 4439 30 100.0 38 .............................. AGTGCTTTAATATGCTTCGGATTAATCTTATTCTTTTT 4371 30 100.0 37 .............................. GCTTTCCGTATTCTTTCATAAGGTCATTTGCTAATGC 4304 30 100.0 38 .............................. TTAGAAATACAATAACTTTCAATATACTCAAAACAGGA 4236 30 100.0 36 .............................. AAGACAAGGAAGGTGGCTATATGAGTGGATTAGTTA 4170 30 100.0 36 .............................. ACCGCTTGATTAGCGGCTATTGGATGTTGTGATAAT 4104 30 100.0 37 .............................. TTAAAAATGCTGAAATTCATGATAAATTATATGGTAC 4037 30 100.0 38 .............................. CCTCCGTTATTACTTTGGTAACTTCATTCTGATTTTAT 3969 30 100.0 35 .............................. GGTGTAGAAAATATTGAAAAAGAAGCAGTAAAAGA 3904 30 100.0 37 .............................. TCTGCTGTTAAATCTATTTCTGCTGTTTTGTCTAATG 3837 30 100.0 37 .............................. TTGCTAATGTTTTGACTACTGGTCTTGTTGGTGATGT 3770 30 100.0 38 .............................. TAAAATGTTTAGTTTTTAAAGAAGGCTTAACAAGAGCC 3702 30 100.0 36 .............................. TAGAATATTATATGTGGGATATGGAAAAAAGAAATT 3636 30 100.0 37 .............................. TAACGTCTCTCAAATGTTTTAATACGCTTTTATTGCC 3569 30 100.0 37 .............................. TGTAACGAATATGACAGCACAACAAGTTAAGGATTTG 3502 30 100.0 37 .............................. ATTATCTGTGGTAATCCGTGTTCTTTAATTGCACGGA 3435 30 100.0 37 .............................. ACACTCCTTTTTAATAATATTTAAGCTTATATAATAA 3368 30 100.0 36 .............................. TATACCTACATGTAATCGTTTGATTTTGGTATACAA 3302 30 100.0 36 .............................. ATGTAATAAGCCAAGATAAACTGCCAGATCACTTTT 3236 30 100.0 38 .............................. TGGTCTGCTGCGGTGTGTGGCAAAACTGCTTTAAATTT 3168 30 100.0 36 .............................. TATCCTTCAAATGTAACTGAAACACTTAAATTGCCG 3102 30 100.0 39 .............................. CGGATAAGAGTTGGGACGAGCTGACAGATCAAGAAAAAA 3033 30 100.0 36 .............................. AGATCGTGTGCAATAATGTATCTCTTTGTCTGTCCA 2967 30 100.0 37 .............................. TAAATCTTTTAAATACTCTAACACCAGTAACTTTGGC 2900 30 100.0 37 .............................. ACTGGTTAGTTGGGCTATTCATTGTCCTGGCAAGGTC 2833 30 100.0 38 .............................. AAGATGAAACAAACGAGTTATACAAGCTGGCTGTAAAA 2765 30 100.0 37 .............................. TCACCAATATTAATATTGTTATGAATAGTAGTCTTAT 2698 30 100.0 36 .............................. TTATCAAAATACTGGAAATAGGCTTGCTGTGCTCGG 2632 30 100.0 37 .............................. TACAAACAGAAGCAGGCTTGCAATTTCATACCACAGC 2565 30 100.0 36 .............................. GCCGTATTTGAGATAAATACGGTATTGAAAAATGAA 2499 30 100.0 36 .............................. CAGAAATACTACAATCTTATAAAAACTTTTGTACAA 2433 30 100.0 38 .............................. TTTCCAAAATTTTGCAATCTATTTGCCTTGGCTCTTGC 2365 30 100.0 36 .............................. AACCGAACATTCAACCGAAGAAATACAAAGCAGAAG 2299 30 100.0 36 .............................. TGATTTTTGGTTATTTTTTTTGTATTTGATTATTAT 2233 30 100.0 37 .............................. TCTAAAATTATACCTATCACAAATATTGTTGTAGAAG 2166 30 100.0 36 .............................. ATATCTTTTGTGTATACTATTCTTTTTTTAAAATAA 2100 30 100.0 37 .............................. AGAAAAAACAGAAAATATAAACATATTTAAGGATATA 2033 30 100.0 35 .............................. TTGCAAAAAGGCTTACGGGGAATGGCGCAAACTAC 1968 30 100.0 37 .............................. AGTCGTTGTAAGCTTCCGTTTTGTTTTGCCTGCCATT 1901 30 100.0 38 .............................. AAATTCAAGGCAGTTCTACCACACACAGCAGCAGACCA 1833 30 100.0 38 .............................. TGTATTAGGTAGAACCGACATTAAAAATCCAGCTGAAA 1765 30 100.0 37 .............................. AATCGCCATTGATTACCTAAAGTGTCACCTATTACAA 1698 30 100.0 37 .............................. TTAAGAAAATCAACTGCAAAGCAATTTAAACGTAAGA 1631 30 100.0 37 .............................. AGATACAAAATGCAGTTACAAAAGGATATATAACGCA 1564 30 100.0 39 .............................. GGGAAAGACATCAAGCCGAACCGTATCAATGTTCAATTA 1495 30 100.0 36 .............................. AGCCATTCAGGAAGCTTGTCCTCATTTTGTTCAATT 1429 30 100.0 37 .............................. TATTCTGCATTTGCTAAAAGAGTAAAAATGACCGAAA 1362 30 100.0 40 .............................. GCTTTAACAGTGTTGTAAGCAATTTGAGCAAGTTCTTCTG 1292 30 100.0 36 .............................. TCAGCCTTTAGTTGTTAATTGTGATATTAATGTTTT 1226 30 100.0 37 .............................. TCTCAATAGGCTTATACAATCCTTTACTACAAAAATA 1159 30 100.0 38 .............................. CCTTCTCGCCCTCTCAAGTAACTCGTCGATTTTAGCTT 1091 30 100.0 37 .............................. GGCAATACAGATTGTATAACTGGCAATGCGGTGCAAG 1024 30 100.0 35 .............................. CCGTCTAACTGCTTTGCAATTTGATAAATAAAACG 959 30 100.0 39 .............................. ATGCTACTGCCTCTGCTCTTGTAATAGGCTGGTCTGGTC 890 30 100.0 37 .............................. CCAGATTATTTAACAGACCAGACAGAGGATTCAATAA 823 30 100.0 38 .............................. TAAGAATGACAAAGGCGAATATGAAGCAGATTTTATAC 755 30 100.0 37 .............................. ATGTCATTATGCAATAATTTGCTAAATCTTTAAGTGG 688 30 100.0 36 .............................. TTGCAATACATCACATTGCCCTTACTAATCCTTTGC 622 30 100.0 37 .............................. AGTGAAAAAGATAAGCAAATGATAAACCAGCATTTAA 555 30 100.0 36 .............................. TCAGTCCTCAGCCCTATTTGTCTTTGCAAAAAACTG 489 30 100.0 38 .............................. AATTAAAGGAAATTTGTGATAAAAAAGGAATTTCTCTT 421 30 100.0 36 .............................. ATTATGTCAGCATTGTAATTCAAGTCGTCAATGTTC 355 30 100.0 38 .............................. AGCTGAAGGTGAAAAATTACAATCTTATAAATTTTTAT 287 30 100.0 36 .............................. GGTTCATCGAGCTCTAACGCTTTTGAAAATGAGATA 221 30 100.0 37 .............................. AAGTTTAATTATTTTCTTCCACAATGTAAACCACCAA 154 30 100.0 38 .............................. TCGTCAAACGATACTGAAAAAATTCCATCCTTTCCTAA 86 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 111 30 100.0 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : TGAGATATATGCTGACGAAGATAAAGTTAAGGTAACCATTTTCGATGATCTTATAATTGATTTAAAACCGGTATTTGATTATTAGAATAGAGAAGGGTATTGTTTTATATGACAGACAATAATTATTATCAAGATTTGTTCACAAAACAGTATACGGTGTAATGAAATAGGATAGAACTGTCATAGGAAGGTTATTTGTAAATCAGAAACCAATTCGTGAACAAAAATAAAGACAACATAGATAATAAAAGTGAAATAGTATAAAGAGGAATTTGAAGAATTATGTAGAATATATTTATATAAAGTTGTTGTATTAAGTAATAATTTGTCGTCTACCTTGGATAGTGCAAAAAGTGTTGGGCACCGACGACATTTTAGGTATTTATCTTTTAAGCTTTTATCAAAAGAGATGGGCATTTGCGGTATTATCAAGTGTGATAGCTTGACATGATCTTTGTTCTTTGCATAAAGAGAATGGCTTTGTAGAAGCATGTGAACGA # Right flank : CATACAAAATGTTCAATATACAAATGTTGAGAATGTAAGTTTTTAGCCTACCTATGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //