Array 1 108984-108159 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJIH01000006.1 Candidimonas nitroreducens strain SC-089 Scaffold4_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 108983 29 100.0 32 ............................. TCAGAATGTGCATCCGGGCCATCATCACGAGG 108922 29 100.0 32 ............................. TTGTTGATGCCTTCGGACATTCGTGCCGGTGT 108861 29 100.0 32 ............................. CACCGGACACAAGCATGTTCGGCGTACCGTAG 108800 29 100.0 32 ............................. CCAAACGAACCACAGACGCCTCAGCGGCATTC 108739 29 100.0 32 ............................. CGTCAGCGGATTGGCGGTTTTGCCGATATCCA 108678 29 96.6 34 ............................T GCGGGCGTGGATGGAGCATGGCGCCATACCCTAT 108615 29 100.0 32 ............................. ACGGTGCCAAGGCGGTCATCAAGATCGGACGC 108554 29 96.6 32 ............................T CGCTGCTTGCAGCGATTCGGGCTGGGGCTGCC 108493 29 100.0 32 ............................. ACAGAACAAAAACAATTCTGGCAGTTCGAGAA 108432 29 100.0 33 ............................. TGGGTCAGGGCGGCGGAGAACTTCCCACCTTTT 108370 29 96.6 32 ............................C GAGCGCTCCATCGTCTTGGCGCCCGACAGCCC 108309 29 100.0 32 ............................. GCATCTTCAGCCATCGCAAAATCGCGTCAGAC 108248 29 100.0 32 ............................. GCAGAGCCAACAGCCTGCATAGCATCACCAAA 108187 29 89.7 0 ........................G.T.A | ========== ====== ====== ====== ============================= ================================== ================== 14 29 98.5 32 CTGTTCCCTACGTGCGTAGGGATGAACCG # Left flank : GAAGAAGTCCTGGCGGAGGGAGGCATCTCTCCACCAGAGGCACCCATAGAGTCAGTCCCTCCGGCGATTCCCAATCCAGAAACTATTGGTGAGGCGGGGCATAGGACACAGTAATGAGTTTCCTGACAGTGGTGACGGAAAATGTTCCTCCCCGATTGCGTGGGCGTATTGCCATCTGGCTGCTGGAGGTGAGGGCGGGGGTATATATCGGAGATGTGTCCAAACGGACGCGCGAGATGGTTTGGGAGCAACTGGCTGAAGGGCATGAAAATGGCAGCGTTGTAATGGCGTGGGCTAGCAACAACGAGTCTGGCTATGAATTCCAGACTTTGGGGCCTAGCCGGCGCATGCCTATTGACTTCGATGGCCTTCGCCTCGTCGCGTTTCATCCCTTGGATGGCCATGAAACCGGGTGATTAGAAAAGAAGCCCTTTAACAAAATAATTGGTAGAATCTTTAGCGCCTATTTAATATAGTAAAAACAATAGGTTAAATTAAGT # Right flank : ATGGAATGCATTGTTGGGCTCGTCCCAATATCAGCGGTCGGTGCAGCAGCCTATCCCGGCATTATGTGTCTAGAGTAGAACTGGAGATGTATCGTCAGTGGCTTGGCCCCAGATTTAATGTTGAGAGGAAAAACCGATGATTGAAACGTTGTCATGGAGAAGCACCTGACGCATTAGTATCCGGCACCTTCTCCTCCGAAGTAAAATCCCTGGCTCAACAAATAGGCAAGCAATCCTGCAACGAGACACCCCATGAGCGATTTTGACGAGATCCTTTATCTGCTGAACAAACAGGGTTGGGCGGTATCGGATACCGCTGTACCCGGCGCTTGGCACGCCAGCCTGCTGGAGCAAGCGCAGCGGCTATGGGTTGCGGGAGAGTTCTCGGGCGGGGAGATCGGGCGTGGCGCCAATGATGCGCGCCAGCCGGCGGTTCGCGGGGATGCCATTTGCTGGGTGGAGCCGGATTCGGCGCTGGCGCAGCATCCGTTTTTCGAGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCTACGTGCGTAGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 119918-118120 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJIH01000006.1 Candidimonas nitroreducens strain SC-089 Scaffold4_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 119917 29 100.0 32 ............................. ATACTCCGGACGCTGCAACCTGGCATCAGGAC 119856 29 100.0 32 ............................. TTTGATATCTACGGTACGCCGAACATGCTCGT 119795 29 100.0 32 ............................. TGCTTCCAGGTGATTCTTTTCAGATGTCTATG 119734 29 100.0 32 ............................. GATACCCACCTTCTCCGGACGGCTGAGCATAC 119673 29 100.0 32 ............................. GAACGTCCCATTCTCTTTTCCGCTCCGATGGT 119612 29 100.0 32 ............................. GTTTCGGAAATCACCCTTCCTAAGCTCACCGC 119551 29 96.6 32 ............................A CAGAGGTTTTTCAATGTGGAATGACATGATGT 119490 29 100.0 32 ............................. ACGCTTGATTCCGCATCGATCGTCACCAGTTG 119429 29 100.0 32 ............................. TGCCAGAGCGTCGCATGAAGGATGTATGCCAC 119368 29 100.0 32 ............................. ATCCTGGGTATGGAGTTCGTGACTATCTACCT 119307 29 100.0 32 ............................. CCGAGGTCGGACGGCCGGCGCATGGCCCGGGC 119246 29 100.0 32 ............................. ATACTACTGCCACGATTGTGTCCTTGTTGGAT 119185 29 96.6 32 ............................T TGTCCAGCCCCGCATAGCCGGCGGCCATAGAG 119124 29 100.0 32 ............................. TAGTACCAGGATTCGTCGGTGATCTTGTTCGC 119063 29 100.0 32 ............................. ATCCACAATATCCTCAGCTATGAAGCATGCGT 119002 29 100.0 32 ............................. CCCATCGTTCAGCTAACTCGTCTGCGGGGGTG 118941 29 100.0 32 ............................. ACGGATGAGGATTCCGATACCTGGGGCCGAAT 118880 29 100.0 32 ............................. GCAGGTCGAACCGATCGCCGCGGCCGCGATCG 118819 29 100.0 32 ............................. CTGAATCCGTCTTGAAATCCCCAGTGCCCTGC 118758 29 100.0 32 ............................. CGCCGTGGACGCCGGAAAAATGACACCCAACG 118697 29 100.0 32 ............................. CACGCAGATCAGCGGGTGACAGGGCTGCCAGC 118636 29 96.6 32 ..........T.................. CATGGCACTCAATCTCGATGATCGGTATCCGG 118575 29 100.0 32 ............................. ACGTTAGGCCCGACTATTGATTCGCTTAAGGC 118514 29 100.0 32 ............................. TCGAGGACGGTGGCGTAGGTCATGAGCTCATC 118453 29 100.0 32 ............................. ATCCCCATCAAGGGCATGCAGTCGTTTCCCCG 118392 29 100.0 32 ............................. CCGGCCCCGGGCGAACTCGAGCTGGGGCCCTG 118331 29 100.0 32 ............................. GTTGTTTGGAGTGTTTCTCCGACTGGTCATCA 118270 29 96.6 32 .C........................... CTCCAGGTCGCCCATGGATCACTTCCCGCCGT 118209 29 100.0 32 ............................. GCGTTTGGCATGGCCAAGGTGCGCCATTTCTC 118148 29 93.1 0 .....................G.....T. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.3 32 GTGTTCTCCGCGTATGCGGAGATGAACCG # Left flank : GACGTACCGCGCTTGGTCAGCGTCAGATTCAGCAGCTTCGCCCCGCGCTGCGCATCGTCGTAGAACATCTCGTAGAAATCGCCCATGCGATAGAACAGCAAGTACGAGCCGGCTTGCGCCTTCAGCTTGAGGTACTGCTGCATCATGGGGGTGTGGTTGGAAAGGTCAGGGGTGGCCATGCGGGGGAATCTATGTGTGTAAATTGGTGAAGCAGACAGTATTATCGTTCATGGCGAGGGTGGGCGCAGGAGGCCTTTTTCGAATAGAGGGTGTACCGATTGGTATGGGTAAGGCAGTATCATTGTCCGATGCGGGATCGGTGTGCCAAGGTAGTTGTTGTAAGTAGCCTAGTCGTTTTGCTAAAGATATCATTGTGAATGTGCCATAGGAAAGCCGAGGGGCTTTTTTCCTGTGACATTAGGCGGCTGTTCTTTAACAAAAAAATCGGTAGAATTTTGTATGCTTATTTTTTTTAGTTAGATCAATGGTTTATGTTTAGA # Right flank : TAAGCTACCTCATCTTCTTCGAACATCATGTTCGTGTTCTCCGTATGGCGGAAAGATCACCTTATGTACGGTTCGGTAGGCAGGATGTCGACGCCCTGAGCTGCGTTGGCGACGTTGGTATAGATGCTACCGTTGGGTAGGCCATGCGATGGCGTGAGGTTGCTTCTCCTATTTGTATGGAAATATATTGCGATTATTCATTCTTAGAAGATGCCGAATTGAGGAGGCCACGCATGCTTTACTTTTCAGAGCTTGCAACTCAAGTTCGCACGCTTTGGGCGAAGAGCGGTGAGTCTGGCGGGCATGGTTTGTTGGCTCATATGCTGGATGTTGCAGCGACCACTGAATCTCTTTTGGCTTTGGAGCCTCCTTCGACGATGCTGTGGGTATCTGGCCAATTGGGTATGTTGCCTGATGAGGCACTACGTTGGTTGGCTTGTATGGTCGGTTTGCATGATTTTGGTAAGGCGATCCCTGGTTTCCAGGCCAAATGGCCTCAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCGCGTATGCGGAGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 759699-753917 **** Predicted by CRISPRDetect 2.4 *** >NZ_NJIH01000003.1 Candidimonas nitroreducens strain SC-089 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 759698 32 100.0 34 ................................ CGCCGCAGATGACGGATATCGTGACGCAACTTTC 759632 32 100.0 36 ................................ ATGTTTAAAACCAAGCCGAACCCTACCTTTGTCGAG 759564 32 100.0 36 ................................ CATCTGGTGCTCGCCCAGGCCGCCAGCATCTATGTA 759496 32 100.0 34 ................................ AATGATGTGGAGAGGGGTGCTTTCCATGATCCTG 759430 32 100.0 35 ................................ CCGACCATGCAGGAGCGCGCGGCCGCGCGCGGCGA 759363 32 100.0 38 ................................ ATTTGGAGCGACCGCGGCAACTGGCCGACTGCTGGGGC 759293 32 100.0 34 ................................ TTCCTGTGTGTCAAACAAAATCGCACCACGAATG 759227 32 100.0 36 ................................ ATGAACATCACCCATGAATACGCGAGTTTTTCGAAA 759159 32 100.0 34 ................................ CCAATGGCTGACGAGCTGGCCGAGCGCCTGGAGC 759093 32 100.0 34 ................................ CTGCTCGTTCGTGCCCTGGACGGATGCGACCTTG 759027 32 100.0 35 ................................ AGCACCAGGAAGCCATCGACGTAATCAACCCGGTC 758960 32 100.0 35 ................................ TACGAGGTGGTCAAGACCGGGGACGATACCTGGGG 758893 32 100.0 34 ................................ TGCTCCGCCGTGACAGCGAGCTGCTGGAGCTGCA 758827 32 100.0 34 ................................ CTCGTCCGGCGTCGATACGCGTCTCGGCGGCCGC 758761 32 100.0 35 ................................ TCGCCATGTCCTGCGCACGCGGGCCGGATCGCCGG 758694 32 100.0 35 ................................ AGCGTCTGATAATTGGCTGTGTCGTCGGGAGTAAC 758627 32 100.0 34 ................................ AGCGAGCAGGACGCGCTCCTGGATGGTGTCTTCC 758561 32 100.0 35 ................................ GCTGCATTCCGGTCTTGTATTCAATACGCATGATG 758494 32 100.0 36 ................................ GTACTGGAACGGCACGTCGCCACCAGTGCAGGTCAG 758426 32 100.0 35 ................................ TGTCGTTCGCGTCGCCGAAGACGTGGAAGACAAGA 758359 32 100.0 34 ................................ ACGTCTCGCACCATCACCTTCAGGCCCGTGGCGC 758293 32 100.0 33 ................................ ATCACCGGCGAGCTGAACAGGCTGAACGGGGCT 758228 32 100.0 35 ................................ GCGCTTGGGCCGCCCAAGCCGCCGGCGCCGTCGCC 758161 32 100.0 34 ................................ TGCAGCACGCACTCGCCGTTGACTTGCACGACAA 758095 32 100.0 35 ................................ CGGAGGTTAAGCCACACGACGAATTTCTGCGGAAG 758028 32 100.0 36 ................................ TACCGGGATGAGCCGGCCCTGGCCGTCGCGCATATG 757960 32 96.9 34 .............T.................. GACCATATCGACACGCTGTCTAAATTTGCCGGTG 757894 32 100.0 35 ................................ ATCAGCACCAGCGGGTCATACCGACCGCCCAGGAA 757827 32 100.0 35 ................................ CACTTCCTGGTCCAAGCTCAAAACCAATAAGGAAT 757760 32 100.0 36 ................................ TCCGCGGGTGCGGACAATGACGATGAGCCGTACGGC 757692 32 100.0 34 ................................ CGCGTCTATCCTGTCGTGATGCCGGTCAGCTTTC 757626 32 100.0 34 ................................ TGTAGCTGTTCGTCGATTGCCTGTTCAGTTTCGC 757560 32 100.0 34 ................................ CCTCACCGCGGGTAGCATCAAATGCGGGCCGCAA 757494 32 100.0 35 ................................ ATCAGAGAGACGATAGCGTCGAATATCACGGATAT 757427 32 100.0 35 ................................ ATCAGAGAGACGATAGCGTCGAATATCACGGATAT 757360 32 100.0 37 ................................ ATCCGGAGCCTGGCCGGCCTGTCGCGCGGCTTGTGTC 757291 32 100.0 34 ................................ AGCAGGTGTTCGGCGCCACGCCCGATGCCCAATC 757225 32 100.0 35 ................................ CTTGTAGAAGGCTTGCAAGGTGCCGGCGCCCGGCG 757158 32 100.0 36 ................................ ATCTCTATCTTCAGGATGATAGCTATTAGGGCCGTG 757090 32 100.0 35 ................................ CTCCTGTTGTTGATGTTCCTCCGGTTTCGGAGTAG 757023 32 100.0 35 ................................ TGTTAATGTCCATCAGTTTGCAATGATTCCGCGTG 756956 32 100.0 33 ................................ CACATACACAGCTGTGCTCAAGCAGCTTAGTGC 756891 32 100.0 36 ................................ GAATATCAGGATGGTCATTGAGCGTGATGATGGCCT 756823 32 100.0 36 ................................ TTCACATAGATCTCGTCGATATAGACGTCTCCGGGC 756755 32 100.0 36 ................................ GATAAATGCCTATCTACACGCTGCAAGGCCCAGATG 756687 32 100.0 36 ................................ TGCGGTGACAGCCATTTGTATTCTCCGATCATGCGC 756619 32 100.0 34 ................................ TATTGATGAAAACGGCCAGCCGACAGCGATACGT 756553 32 100.0 34 ................................ GCTGATGCGGTGCGCCGGGAGATCGTCGACGCGT 756487 32 100.0 33 ................................ TTGATACCTAGACATGCCATGACGGTTGAAGAG 756422 32 100.0 34 ................................ CTTGAGAGACTTCGACGTGCGCCCAGTCGAGCCG 756356 32 96.9 35 ..T............................. CAGTCGTTAGATAATGGCCGCTGGTACGAGACACC 756289 32 100.0 35 ................................ ACCAGCATGCAGGACAAGCTGGACGCGGCCCTGGC 756222 32 100.0 35 ................................ GACATAGTCGTCGGCGTCGCCGCCATGGGGCGCCT 756155 32 100.0 34 ................................ AATCCGACACGCTGGCTTTCGTCTATGCGAACGT 756089 32 100.0 34 ................................ ATCATCCAGGGTGCTCGTGAAACGCGCGTCAGTG 756023 32 100.0 35 ................................ AATGTGAGTGCCGCTTAACCAAACGCATCATAGAG 755956 32 100.0 36 ................................ TTGCCTCGGTTCATCGCAGACTCCTTTGCTTGCATC 755888 32 100.0 34 ................................ TTTTTGGAATTGCTATGGTTACTCGTGATTTGCC 755822 32 100.0 36 ................................ TCGAAGATCTTCGATGCGCTTCGCGTCAACGGGACG 755754 32 100.0 34 ................................ GAATACAGCGAATGGTCAATGGACAGCCGCCTGT 755688 32 100.0 34 ................................ ATGACCCGGAATTTCTACCGGTCATCTATGAATA 755622 32 100.0 37 ................................ TCCCATGAACTTTGCTAACATTGCGAGCGCTATAGGT 755553 32 100.0 36 ................................ ATGAAGCTTCCTGTATCGGAATTTGTACAGGAAACT 755485 32 100.0 34 ................................ TAGTTATACCACTGTTGAATCGCCACGAATCCTG 755419 32 100.0 34 ................................ ACCAAGAATATGATCTATGCACGGATCCAGGCGG 755353 32 100.0 35 ................................ GATTCGATGCGCAGCAGGGCCTATTCTGAGTTTCC 755286 32 100.0 34 ................................ GCTGACATGCTGCTCAAGATGATTGCCAACGCTG 755220 32 100.0 35 ................................ GCGTGCTGTTCGTCCGGCGGCAGCTTGGCCAGCGC 755153 32 100.0 34 ................................ TTTTCCGATGCGCTTGAATTGTCGACTCGATAAT 755087 32 100.0 35 ................................ ACCCTCCGATTTCGAATCACCAGCGCCCCCAGTGG 755020 32 100.0 35 ................................ GTTCTTTGACAACCCAGGAAATCATCGACGCGCTG 754953 32 100.0 34 ................................ TATGTTTGGGTCAATAGTGCATGGACGTTGGACG 754887 32 100.0 35 ................................ TCATCAAGACGCGCAAGCATCTACTTGAACGCGAG 754820 32 100.0 36 ................................ TGCTAGGGCGGCGAGGCACGCATGTTGATCCCGAGT 754752 32 100.0 35 ................................ AGGACATAGGCCACGATGAACTGATAGGCGCGCTC 754685 32 100.0 34 ................................ TAACAAACTCATCAATAAGAGCTACCTTATCAAT 754619 32 96.9 36 ...T............................ CCCTGCAAGGTGCCCGCTACAGCACCCACGGCGCAC 754551 32 100.0 36 ................................ TTGGCGCTTATAGTGCCAGTTAACGGCAAAAGTGGC 754483 32 100.0 35 ................................ TGCACGTTCAGCCGGGCAATCGGATCAACGCCCTG 754416 32 100.0 34 ................................ ACGTTCTATGGCCACGACTTTGGCGACGCTAAGG 754350 32 100.0 35 ................................ TGGCTGATCTGTTGGGCAGCCAGGCCGGTGCCTGC 754283 32 100.0 34 ................................ ATCCAGCCTTGGGCGCCGACAAAGGGCTTGGGCT 754217 32 100.0 33 ................................ GTCACCCTCCTGAAGTAACTTTACTGAGGTCTT 754152 32 100.0 36 ................................ GATGTTCTGGCCGCCGCCCAGGATCGCCTTAAAAAA 754084 32 87.5 35 ..T.........A......A.C.......... ATGAATATGCTCAAGGCCATCGAACTACGCGGTGG 754017 32 84.4 36 ............TG..GC...C.......... CTAGAAGAGGCCCTGGATCTGGTGCAGTCCTGCCAC T [754010] 753948 32 78.1 0 ....TG....G...AA..A.A........... | ========== ====== ====== ====== ================================ ====================================== ================== 87 32 99.3 35 GTCGCATCCTTCGCGGATGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAATAAATACGATATCGCCATGATGGTTCTAGTCAGCTACGATGTCAGCACTTCCTCGCCCGGCGGGGAAAAGCGTCTTAGGCACGTCGCCAGAACCTGTCAGGACTATGGCCAGAGAGTTCAGTTCTCCGTTTTTGAATTAGAAGTAGACACGGCCCGTTGGGTCAAAATCAAACAAAAACTGTGCGATCTAATAGATCCAGAAGTCGATAGCCTGCGCTTCTATTACCTAGGCCTCAAATGGCAGGGCAAAATCGAGCATATTGGCTCGAAGCCTGTGCTTGATCTCAACGGCCCCCTGATCCTCTGATTTTCTGCGAACCCCAAGTTACGGCCTCTTTCCCCAGAGGTTCGCGCAAACGCAACCCATTGCTACTAAACCCCCTTTTTCTTATACCAAGGATTTGGGGGAAAATTTTTTGGCCAATAAAGCGATTTCGCAGAAAATCCCCTAAAAAACCAAATATTTCAACACTCTATAATCACTAA # Right flank : GCGACGAGCACGTATAACGACGACAAGCGGTAGCCGTTGTGCCCATTGCAAATACGACGTTCGGTATGCTGATCAGTTGCTGGCCCAATGAGCTGCATCAATCTACGTACCCATGTAGGACACACGACGACCATATCGGCGCACCTAGCTCTCAAATTATCGCTATCCGTGCTTCTATAAATAAGGGAGATTAATTTTGTAAACCATTCGGTAATCGCCTAATCACCTGCCCACTGCGCGTGCCCAGGCTCCTGCCTTCCTTCCACGCCAGCTCCCCGTTAACAATCACCGCTACTATGCCTTGCGCCATGCGTGTCGAATCCTGGTAGGTGGCCAGGTCGCGGACGGTGGCGGGGTCGAAGACGACTACATCGGCGTGGCTGCCGGGCTGCAGTTGCCCCCGGCCTTTCAGGCCGAAGTTGCGGGCGGTCAGCCCGGTCATTTTCCAGACTGCGGTTTCCAGCGGGAACAGGCCCAGGTCGCGGCAGTAGTGGCCCAGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTTCGCGGATGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //