Array 1 3139582-3137295 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134215.1 Shimwellia blattae strain NCTC12127 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3139581 29 100.0 32 ............................. TAAATTACGGATTTCTTTACATACAGAGATAC 3139520 29 100.0 32 ............................. ATGCTCTTTGATTTCCGGCATCTGGATCGCAA 3139459 29 96.6 32 ............................A TTTCCACATCACGACTAAATTTTTCTCTTTCC 3139398 29 100.0 32 ............................. GAATTGGTTTCCTGATACAGGATTCTCCATTT 3139337 29 100.0 32 ............................. TTTTCTATGGTTGCTTTCATCTCATTGATTTT 3139276 29 100.0 32 ............................. TTCACGCACCAATTTAATTTCAGCCTCAGAAC 3139215 29 100.0 32 ............................. CAACTGTGATATTATGTTTTCATTCCTAGCTT 3139154 29 100.0 32 ............................. GGGCTTTCGCCCCAATTGTTATTCTTCTTCTA 3139093 29 100.0 32 ............................. GTGATCACCATGGTCGGCGATGCGGTGCCGTC 3139032 29 100.0 32 ............................. CCTGTTTCAGTATGGTTTTATCACCATCATTT 3138971 29 100.0 32 ............................. AAATTTGCTAAGACTGTAAAACTGGTTAGCAA 3138910 29 100.0 32 ............................. AAAACACAATTGCAGTGACCAGTGCTGCTAAT 3138849 29 100.0 32 ............................. GTCCTTAACCGATTTAACGCGGCTGGGCAGGC 3138788 29 100.0 32 ............................. CGCTTCCAGATTGTTTTTCATATCAGGGAATT 3138727 29 100.0 33 ............................. CGCGTGGAGTCCAAGCATGACAACTGATATCAC 3138665 29 100.0 32 ............................. CAACGGCGGAGAACCACGCATAAATCCGGTGC 3138604 29 100.0 32 ............................. ATAGACAAGGCGATGATAAATATGATCGCCAG 3138543 29 100.0 32 ............................. TGATTGGGATATATCCTAATTCAGCAATTCTT 3138482 29 100.0 32 ............................. ATCGTTTAACTTCTCTTGCGGTGTCGTTTCCA 3138421 29 100.0 32 ............................. AGAATGAATCTCTGTTTATTGAGCGAGCAACC 3138360 29 100.0 32 ............................. TGGCAACGTTAATAGAACCTAATTTATCCAGG 3138299 29 93.1 32 ............T...............C TATGATATTAAGAAATTGGCCCTGGAATGTGC 3138238 29 100.0 32 ............................. CGTGGTTATTAAATTCACCGGCTGTGTTTGTT 3138177 29 100.0 32 ............................. GAAACAAAATGGCTTATCAAACAGGTAAAAAA 3138116 29 100.0 32 ............................. ATTATTGATATCGTTAACGCGGGCACGCTGTT 3138055 29 100.0 32 ............................. GTCACCATCAGCAGTAGAAAACATAATGGTGT 3137994 29 100.0 32 ............................. GTTCAGCAGTGCGAAGAATTTACGGTGAAATG 3137933 29 100.0 32 ............................. GTGGCGGCTTCTTTTGCCGTGATCGGTTCTTC 3137872 29 96.6 32 ............................C GATCACCCAAACCCATGGGTTAGCCTGCCAGC 3137811 29 100.0 32 ............................. TTAAACGAATATGTCCCCTCGTCATTCACCAG 3137750 29 100.0 32 ............................. TGCAACAACAGCACTAATAACCGCTACAGGAT 3137689 29 100.0 32 ............................. AAATAAAAAACATGAAGAGATTCTCTGCATAT 3137628 29 100.0 32 ............................. GTTTACCGCTATTCGTTTGATGTTGACTGGAT 3137567 29 100.0 32 ............................. CAGATGGTCCCGCCTATCGTTGTGGCCGTGGC 3137506 29 100.0 32 ............................. CTGAATGGCACAGTCGCGCCAGTAAACTGTTT 3137445 29 100.0 32 ............................. CAGCGCTTACAGGTTCATTCCCCGCGAGCATT 3137384 29 100.0 32 ............................. TGGCATATGGACACGGATGATCAGGTTTATAT 3137323 29 75.9 0 A........A.C..C.T........C..C | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATCGAGGAGATTCTGGCTGCCGGGGAGATCCAGCCACCACCGCCGCCGGAAGATGCCCAGCCGGTGGCTATCCCATTACCGGTTTCCCTGGGGGATGCCGGGCACCGGAGTCACTAACGATGAGTATGCTGGTTGTGGTTACGGAAAATGTTCCGCCGCGTTTGCGCGGGCGGCTTGCTGTCTGGTTACTGGAGGTCCGGGCGGGTGTCTATGTGGGGGATGTGTCGGCACGTATCCGGGCAATGATATGGGAGCAGATCTCGGTACTGGCGGAGGGCGGAAGTGTGGTGATGGCCTGGGCGACAAATACCGAATCCGGGTTTGAGTTTCAGACTTACGGTGAGAACCGCCGTATTCCGGTAGATCTTGATGGTCTGCGACTGGTCTCTTTTCTGCCTGTTATAAATCAGTAAGTTAACGTTCTTTAATAATCTGGAGAATTTGGTAGAATCAGAAACGTTAAAAAAATGCAGTAAATTCAGTTGTCTATATTTAGA # Right flank : ATGTGCCTGGCCCTCCTGCAGCTGTTGCTGTCAGAAATATCCCCGTTAAATGTAATTGTATTGTTAAGTAAATGCCGAATTGATCACAATAATTAAACAATTTGCCCGTTTTATACGCATTATCCAAAAATGTAGATATTTTTAATTTATGGCTACGAAATGAACATCGCCTTGTCTCCCTGATTATCAACAGAGGATAGATCCTGATGAACGCACTGACTGCCGTAAAACCCGCTGTCCAGAGAACCACCGGATTTACCATTGCCCCGAGCGTGCAATCGCCCCGTCTGCTGGAGCTGACCTTTAGCGCTGAAACTGCCCGGCAGTTTCTGGAGCAGGTGGCACAGTGGCCAGTGCAGGCGCTGGAGTACAAATCTTTCCTGCGTTTCAAAGTGGCCCGCGTGCTCGACGATCTGTGCGCGGGGCAGCTTCAGCCGCTGCTGATTCACACCCTGCTAAACCGCGATGAAGGGGCGCTGCTGATTGGTGCTGAGGGCATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //