Array 1 3-1251 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOXJ01000097.1 Salmonella enterica subsp. houtenae serovar 50:g,z51:- str. 01-0133 SEH50133_5000007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 ............................. CATTCAACCAGTTTGGTGGAGCGTTGAAGTTG 64 29 100.0 32 ............................. AGTGCATCGAGGCGACCAGCGCGGTGCTGACA 125 29 100.0 32 ............................. CGGGCCGCACTGGCGGCCCATAGGTATTACGC 186 29 100.0 32 ............................. TGATTTTATAAAATTCTGTAAACGCAGTTGGC 247 29 100.0 32 ............................. GCGACCTAAGCCGCGCTCAGTTGCTTAGCCAT 308 29 100.0 32 ............................. CGGTCGCCATTTGTGGGCAAGATTTTGCGGTA 369 29 100.0 32 ............................. GGCAAAAATCCTATTTTGGAATTGCCAACAGG 430 29 100.0 32 ............................. CTACGGCGAAAATCGCCCATTAAACCACGACC 491 29 100.0 32 ............................. GATGTAGCTGAACTTCTGGAGGTGCTGAAATC 552 29 100.0 32 ............................. CATCCAATGTCCAGACACCCCAAATCACTGTA 613 29 100.0 32 ............................. GTGGTGAGAGATTGTCGTCTGATGTTGTGGCT 674 29 100.0 32 ............................. CGCCCGAAATTGCCGGATAATGCTTCATGTGA 735 29 96.6 32 ............................A GTAACGCGCCTTACTTCTGAACGTGATAAATA 796 29 100.0 32 ............................. CCACCCACCAGCCCAGCGCCAAAACCGCCACC 857 29 100.0 32 ............................. GAATGCTTAAAACGCCGGATGATTTAACCGGA 918 29 100.0 32 ............................. AACAACCAGTAACAGCAGTACAGAGAACGCCC 979 29 100.0 32 ............................. AAACTATTTCTGGAATGCAGGAAAAAGACCCG 1040 29 100.0 32 ............................. AGACAGAAAAGACCCAAGAAAAAAACATGGAA 1101 29 100.0 32 ............................. GATCTGTCCGGTATGGTTATTGTCTGCGGATA 1162 29 93.1 32 ................T...........A GAATGGCGCTAGTTCGTCATATCAATGTGAAT 1223 29 89.7 0 ............T..............GT | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATG # Right flank : TTTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCACCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 458-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOXJ01000031.1 Salmonella enterica subsp. houtenae serovar 50:g,z51:- str. 01-0133 SEH50133_14000005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 457 29 100.0 32 ............................. CAACGCCCTGACATTCTCACGCCCGCGCGAAA 396 29 100.0 32 ............................. GGACTTCCCACTCAAAAACAATTCCTACGTTA 335 29 100.0 32 ............................. TTAGCGGGTTAGGGTATCTCACAGGGAGAATG 274 29 100.0 32 ............................. AGCAGTGGAAAGTTGAGGGATTTCAGCCCTAT 213 29 100.0 32 ............................. CATTCAACCAGTTTGGTGGAGCGTTGAAGTTG 152 29 100.0 32 ............................. AGTGCATCGAGGCGACCAGCGCGGTGCTGACA 91 29 100.0 32 ............................. CGGGCCGCACTGGCGGCCCATAGGTATTACGC 30 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGAGGTCCTTGCCGCCGGAGAAATCCAGCCGCCGTCTCCTCCTGAAGATGCGCAGCCCATTGCGATTCCACTTCCTGTTTCTCTGGGAGATTCAGGCCACCGGAGTAGCTGACAATGAGTATGTTAGTTGTTGTTACAGAAAATGTACCGCCACGTCTGCGAGGCAGGCTGGCCGTCTGGTTACTGGAAATTCGCGCTGGTGTTTATGTTGGCGATGTTTCAACAAAGATCCGCGAGATGGTATGGCAGCAGATCTCTATTCTGGCAGAGGGAGGGAATGTTGTGATGGCATGGGCGACGAACACTGAATCAGGGTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTGGATCTTGATGGATTGCGATTAGTGTCTTTTCTGCCTGTTGTAAATCAATAAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTAGACTTTGGTATGCTAAAAAAAGCCTTTTAATTCAGTTGTGTATATTTAGA # Right flank : GA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //