Array 1 75182-74115 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHJ01000009.1 Nostoc linckia z18 scaffold10.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 75181 36 100.0 37 .................................... GGCAATATCTTGCAACTGTTCTGGAGAAAAACTTTTC 75108 36 100.0 36 .................................... TAACGCATGGATCTTCCATTACCATTACAACTTCTT 75036 36 100.0 36 .................................... AATCTTTTGTCTCTCGATGGAGGGTGCTTGCAGATT 74964 36 100.0 40 .................................... TTGACACTAGAAGTTCCTCCTGCGCCGCCTTGACCATTAC 74888 36 100.0 37 .................................... GCTATAAAAACAGCATCGGAAGCGGGTATTCCAACTA 74815 36 100.0 34 .................................... TTTACAACAGAAAAAACACGGATTCTATGTAGAA 74745 36 100.0 38 .................................... AAGATTCTTTTTGCACGTTGTAAATGGCAGCAGGGATT 74671 36 100.0 39 .................................... TATTTGCAATACCCAGTCTTTTTTTGTTTTTGGCAAAAG 74596 36 100.0 41 .................................... TAAAGTTGATGGTTTTTGTCGTCCAGTGCTGTGACCTTCTC 74519 36 100.0 38 .................................... ACTTGTCCTTCCAACTTTGTGGAAAGACTTCTCGACTC 74445 36 100.0 37 .................................... CACCAAGCCAGTCAATCCTCAAAGTTCTTGAGGTTGC 74372 36 100.0 40 .................................... TCTTCCAACATGTTGTCGCCAATAATGGAAAAGCCGTTTT 74296 36 94.4 39 ..........C..C...................... CAAATCTCATTAGCCCAGTTCCCATTTTCGGAACGGGGT 74221 36 97.2 35 ..........C......................... AATTTCTTTGATTTTTGCTTTGAACTTCAAGTTTG 74150 35 88.9 0 ..........C..............C...-...T.. | T [74117] ========== ====== ====== ====== ==================================== ========================================= ================== 15 36 98.7 38 CTTTACCGATTGCTCTAAATCGGAATTAATGGAAAC # Left flank : GGAGCAAAGGTTATGGCTGTATATTTGGTCACGCTTGCTTTTGTCACTGGTTGCAGTCTTGTTTAAATTACTGTAGAAATTTGAGTTTTTATTCAGTGGTTATACTTTGTAATAATTCTCGATTTGGGTAATTAGGAGTTATGTAAGGGTGGGTGAGTTCTTGTGACTTTTATATCTTGGCGGAAATTTTGAGGATGTAAAGGCCTTTTCGTGCGAATGACGAAATTTTTTTTAGAGATGATTTATTTCACGCAGAGGCGCAGCACTTCGGCTACGCTCAGTGACCGGCGCGGAGAGGATGAGGAGTTTGAGATGTTCATCGACACCAGTCGCCAAATCGCTACAATCCTATATTTTTCGTTGAGTGGTGTCGATTCCTTACTGGATAATGATTTGAGGTATGTGTGTTGTTCAATTTCACACAACATATATAATGTTTTTTAGAGTGGTGTCGATTTGGCGGCTGAAAGCCTTACGGGGCAAAGGCTCCTGAACGAACT # Right flank : CAAAAATATCCAATCTTGTGGGGTGGGCGTCTCGCCCGCCCAGTCCATAGGGCGGACAAGATGTCCACCCCACAAGAAAAAATCCCCGACTTTTTAGAAAAGCCGGGAATTTTATTTTTCTCAATTGCTTATTGCATTAAAATCTGACGGATTAAAATACTCATTACTTCGTCAGCATTACCAGTTGGTACTAATGGACTCCAGTCGCCGACGCTAGCGTAGCCAATGATTTGCAGATGGTGAATTGTGCCGATAACTGCTTTTGAAGAACCCATCAATAAATGTTTAACCGGTTCTCTTTTGGGTAATGGATTTTGAGCCGGTTGATTTAAGACTGGTATATTTAAGTTCTCGCTATCCAAGTATTGTTGCAGTTCTGATTGATTTTCTACAAACTCTTCTTCTTGTGCCATGATGATAATTAACTCTCAGAATGGGGGTTTAGGGAAAGGCGATCGCAAGCTCTTGCCGGAGGGCGATCGCCTTTCTTATTTGCATAT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCTCTAAATCGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 95689-94001 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHJ01000002.1 Nostoc linckia z18 scaffold2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 95688 37 100.0 34 ..................................... AATGACCCAGAGCTTCAGGCAATGCAACAACATT 95617 37 100.0 33 ..................................... AGATAATTTCTAATGACACAACTTAAGCCAGTT 95547 37 100.0 41 ..................................... TTGTGGGTAGGGATTAATCAAATCTTTGTAGCGATTGTAGG 95469 37 100.0 37 ..................................... ATGCCCCTCTGGGTTGCTTACATGACCTTTAGGCGCA 95395 37 100.0 33 ..................................... AAAAGGATAATGGCTAATGGAACCTTCCTTGCT 95325 37 100.0 34 ..................................... AGAGAATGCAGAGGACTTATACTTGATGAATCTG 95254 37 100.0 34 ..................................... CCATATTTATTATCCTTTTAATATAAATTATTAA 95183 37 100.0 36 ..................................... AATATTAACTTGCAAGGAGAGGACAATTTATCACAA 95110 37 100.0 35 ..................................... AAATCAGAAAAATTAATATACTCAAATCCCCAATC 95038 37 100.0 34 ..................................... AATATCAAATCTGCTGTATTAGCAATCTCTAAAT 94967 37 100.0 33 ..................................... ATCTGCTCTTACTTGAGAAACTGTTCCCGCTTC 94897 37 100.0 34 ..................................... AAGTACTGAGCGGTTCCCTGGCTACTACGATCGG 94826 37 100.0 35 ..................................... ACAGACCTTACAAGTGTACCTGTAACCCGTGGAAG 94754 37 100.0 34 ..................................... CTGGCTCAGGCTGCCACTTAATCACCACAAAAAT 94683 37 100.0 34 ..................................... TTGGAAGATGATATTAGAATCGTCGAGGGAGCGA 94612 37 100.0 33 ..................................... ACCTACCACCAGGAATGATTTGAGGGCATTGCC 94542 37 100.0 40 ..................................... CTTTGTAGAACAAATTGCGCTGTTCGACCCTGACATCAAA 94465 37 100.0 35 ..................................... ATCATGTTGAGCACCCTATCTAAGTGCAGCCAATT 94393 37 100.0 32 ..................................... ATCTTGTGTGGCATCTCCTTCCTCGGCCCCCA 94324 37 100.0 38 ..................................... CATAGGGTTTATGCGAGCGAGTGTTGCTAGCGCTTTGG 94249 37 100.0 33 ..................................... GGCTAACCAGAATTAAGCAGAAACCGACTACTA 94179 37 100.0 34 ..................................... ATAAAGCACGAGCATCGGATCGATACTTGGCACT 94108 37 100.0 34 ..................................... GATTTTAATACTTATCGCCAAAAATTTAAGGCGG 94037 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 24 37 100.0 35 ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Left flank : CCAATATGCCAGGAGCCGTACCTTGGACAGCAACTCAGGCACTCAATAACAGTACATTACCTTATGTTGTGCAGTTAGCGAACTTGGGAATTAAAGCATTAGAAGTAAACCCAGCTTTAGCTAAAGGTGTGAATGTGCAAAATCATAAATTAGTGCATCCTGCTGTGCAAGAGGTTTTTCCTGATTTAGTGAGTTAGAAGCTGTGCAAGTGTTGGGCGATCGCCTATGCTAATGGTGGCAATCTTCATCAATTAGACTAATTTCGTTACCAAATGCGCGGATGGGTAGCTGTAGAAAATCAAAGCCAGCAAAAAATGGCTGCATCTCAATGTGTACAAGGTTTTGACGACTATAGAACTTTTAAACCATCCGCGCACCTTACGGAGACTGAGTTTCAGCAATTTTGAATTGTTTGACTACCATTTCCTGTGTTATCATTCTGTACATCCGCGCAACTGCACCTTGAAAACCAAATACAGCAAGTCTTTTTAGTGCCGGCG # Right flank : TCTGATTTTTGAGTTTGTACGAAATAAAAGCCTTGAAGTTACGCGGATTCTCAATGCAGAGGAAGATATAGCAAGCATTTGAGAACAAGAGGTCTATTGAATAGCGATCGCCATTATGATTGTATCGGTGGAGTACTGGCATTTGAGGTCATTTTTGCCTTATCGCCCTCAGACTTAGTACAATATTTCACCCATTCAGTGTATGGCGATCGCTTTCCTCTTTGGATATGCTTTAAGAAGTATTAAAACTAGGCTCCTATTTTTCGGTATCCGTATCTGAGCGATTGTAATTATTAAACTGACAAACTTGAGAAATTTAACAATGAAATCCTTTTCTATTCCCTTAATTGTTGTAATGAGCGCACTTGCTCTTCCCCAGAGTGCCTATGGTAACGAACAGAATGTCCCAAATGCAACAAGCGATGGCAATCAGGCTGAAGCTTTATTGACTCAACCCGCCTCCATTAATACTAAGTGGAGAAATTTTAGCGGACAGACTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 5013-5428 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHJ01000190.1 Nostoc linckia z18 scaffold234.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 5013 36 100.0 42 .................................... TTGTTCCATCTGAATGCTGATAGAACCTATATCTTGTAAGTT 5091 36 100.0 40 .................................... ATATTTGAAGGTAGAGATTTTGTTGGAAGTAAACATTTAC 5167 36 100.0 38 .................................... TTTTTAGTCGTTTCAGTTGTTAGTCGCTCTTGCTTCTT 5241 36 100.0 34 .................................... TTAGAAGCCGTTGAACGATACAAGGTAGATATAG 5311 36 100.0 46 .................................... AGGACTCATCTTGTCTAAAAAGCCAGTTCCATTTTTTACAACTACA 5393 36 94.4 0 .......G......A..................... | ========== ====== ====== ====== ==================================== ============================================== ================== 6 36 99.1 40 GCCGCTTCTCTTCTGAGAAGTGGAATTAATGGAAAC # Left flank : TAGTTATGAGCAGTTTCAACTGGGATTGTTTATGATGAGTCAGCATATTATTGGTGTAGCTACAAAATGAACAAGTAAGTTTTTAATAATTATTTTTTGGTAATATAAAGTTAATTTTTCAATATTACATGGGGAAAAATCGAACCGCAAAGTACGCAAAGAGATAAGAGTTGAAGTAGGTAGCTATGATTAAACAAGTTGCAAGTGGCAAGTATAGTTTTGTAATGGGGATTTTAACGCCACAACAAAATTTGCTGGTTATAAAACTGGGGGACTTAAACCCCCAGAATTTGTTAAATCTCAGAAATTATTGTTTCTGTGCGGCGGGGTCGAGTCTATGGTGCAAATGCTGATTCTCTCGTTAACCCGGCCGATATCCTTCTACACAAGGGTTTCAGAGTTTTTCGCCTCTGCTTTTTCTCTGGAAACAGCCTTCGGTTTCTACCCCGTCGCAAATGGCGTCTGGACATTAGGTGGTGTCAGGGTTTAAATTAATAGGG # Right flank : CCAGCAATCTTTGTTCCATACCAACATTACCCTGCAAGCCACCTGTGTGTACCAGCAGCAAACTTTTGCCTTTAGCAAAAAAACCCTGCTGTAATAAATCCATCACGCCATAAAACATTTTGGCAGTATATACATAATCAAGAGGTACATTGTGCGCCGAGCTAAATTCTTGGCTGAATCGTAGCAACTCCTGATTGACTTTTGCATAGCCGCCGAAGTGATAATCACACATTAATTCCCAACAAGCGGGAGAATTATATGGACTCGGTAAACCAGAGGCGAGGTAATTTGTCAAGAGATTTTCTATTTCTTTTCCTAGAAAATTGCCATTTTTCAACACCGGAAAAGCGATCGCTTTTTGTCTTTGATTTAAAGAAAGTGCAATTCCAGCCAGCGTTGTTGCAGTACCGCAGGCTAGGCAAATATAATCAAAGGCGTAGCCAGCGGTAGACATCCCTTGATTAATTATCTCTGTACAACCGCGCACGCCGTTTAAATTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTTCTCTTCTGAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 50941-50468 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHJ01000023.1 Nostoc linckia z18 scaffold24.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 50940 37 100.0 34 ..................................... TACTTGTTTGCCAAATGCTTGAATGCTCCCGAAG 50869 37 100.0 36 ..................................... CTGGCTGTAACTTAGCTTCAAAACTTTCAGCTTCAA 50796 37 100.0 34 ..................................... ACTTTATATAAACCTGAGTTTAAGTTTACCAAAA 50725 37 100.0 33 ..................................... GGGATAAAGCAGACCCTTACAAGCTAGAACCCG 50655 37 100.0 35 ..................................... TACTATATCTGGCAATCCACAGACGGGAAGCATTA 50583 37 100.0 42 ..................................... TGCTTGGACTGAGATTTCAAATCCTGAATGCGCCAATTCTGC 50504 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 7 37 100.0 36 ATTGAAATTTCATCTACTCCCTATTAGGGATTGAAAC # Left flank : AATGAATGTTGTTGTGTCTTATGATATTTCTGAAGATAAACGCCGTACCAAAATTCACAAAATTCTCAAGTCCTATGGACAATGGGTACAGTACAGTGTATTTGAATGTCATCTGACAGATACTCAGTACGCAAAATTGCGATCGCGTTTGAACAAGTTAATTAAACCTGAAACCGATAGTATACTTTTTTACTTTTTGTGTGCCTGCTGTCTCGGTAAAGTTGAACGTATTGGTGGCGAAAAAATTCGTGATGACTCTATTTTCTTTGCTGAGTGCGCGGATGGGTAGATGTTGAAAACCAAATTGCAGCAAGCAACCTTCAAATTCCTCTGCTGCAAGAGTTTTGGGGAAAATAGCTCAGAAAGTACCCGCGCACCTTATACAGACTAGGTTCTAGCCATTTTCCTCAAACCCAATGTCCATTTCACATGCTATGATTTCCTCATCCGCGCTACCGAACCTTGAAAACCCAATACAAACAATGTTTCAGGCTACCGCC # Right flank : ACAGATGAAACCTAATGTGCAGAGATAGTTAATACATCGCTAATAAAACTGAGCAAACCTCTGCGTACCTTTGCGCTGTCCTCCGCGCCCCTCTGCGTTTAAAAAATTATTTCCACACCTCACTTAACTAAAAATCCCTATAAAAAAGAGAGAAATTAAAACTGATTCCTCAATCAAATAGAAATCATCACATTCAATAGTGAAACACCAATATCCAGCATCCAAAATCCGAAGCTGACTATAGTGTTAGGAACTTTTTTTTTAAGAATTTACCTCCTGAAATATCCGAAATTTGTGGTAATTCAGTTCTATTTAATGATTCAACAAAACTCAAACCCAGAGACTTACTAGAAATGCTTTGAGTGTAGCTAGCATTAAGATAACGAATATATTGTGACTTTCCTGCAATATAACTTTGGAAAAAAGGCAAACTTAAAACAGTCATATAACGACGCGCTTGGGAAGCATCGCCAATCATATCAGCAGGTAATGATACTTGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATTTCATCTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 41492-42184 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHJ01000028.1 Nostoc linckia z18 scaffold29.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 41492 36 97.2 38 ...............C.................... CTTTTGGTTGCTGCACTGTTTCCACAGTTATGTCTCTG 41566 36 97.2 37 ...............C.................... CCCTAGGCCGCAAGCGCCTAGTAATACCCTCAACCCG 41639 36 97.2 37 ...............C.................... ATTAGAGCTGAGTAGACCGCGTCAATATGACCGGCCA 41712 36 97.2 42 ...............C.................... TCAAGCATATCAAAATCTGAAACTAAGACTACTTTATGACGA 41790 36 100.0 34 .................................... AATTTTGCTACGAATTGACCGCATGTAAAATCTG 41860 36 100.0 35 .................................... GTTTTCTACTCCACTGGTCTCTTTTGTGTCCTTCC 41931 36 97.2 39 .............T...................... AATCAAGAACAAACTTTCCTTCCGCATTTTTCCCTAGAA 42006 36 100.0 34 .................................... TGAACTTCCTTCAAAGTCGGGTTTTCAACCAATA 42076 36 100.0 37 .................................... TTGTCACTGTTGACGACAGCGCTCAACCAGTTAGGCC 42149 36 97.2 0 .......A............................ | ========== ====== ====== ====== ==================================== ========================================== ================== 10 36 98.3 37 CTTTACCGATTCCCTGAAATCGGAATTAATGGAAAC # Left flank : AATTATAAGTAATATTCACATTTGATTTACTTTGTTGGTACACAGGCTTAATTTCTTCCAGCGCATCTTTTAAGCTAGCAGCGGCTGACACAAGTATGTTGTTTGACTGGGCGACTACACGAGAAGGAGTAACTAGTGGTAAAATAATTGCTAGCAATAAACCAGCAATTGCTATACCCAAAAAGCCAAGAATTTGTCTTCTTTTCATGGAAAAAGCACTTTAGAGGTTTTTTTCATCAAATTGATGCTAGCTAGAATACTACCAAAAATACCAAAATTTACCCAACTATATCGGTAAAATTTTTGTATCAGATGTTCATCGACACACCCCGCCAAATCTTCAAAACCCTATATTTCTCGTTGAGGTGTGTCGATACCTTACAGGACAAGGGTTTGAGGTGTGTGTTTGACTTAATTTTTCACAAGATATATAGTCTTTTTCAGAGGTGTGTCGATTTGGCGGCTGAAAGCCTTGCGGGGCAAAGCCTCCTGAACGAACT # Right flank : CTTCTTGCTGTTGAGATGCGGTGCAACATCATAACTTGTAGCCGCCTTAGCAAGGAATCCCCATAAAGCAAGAATCCCACGGCTTTTTGTTAAACTCAGCAAGAGCGATAGTTTAATAGCCGTGGGATTTTCAGTTATGCCTTCTCCATTTCCTGGTATGAATCCCTATTTGGAACATCCTTCTCTGTAGACAGGAATTCATCATACAACAACTCAAGAAAATACGAATTACGAATTACGAATTACAAATTATTAGCCATCTCTAATAACTGTGCTTCGGTTAGCTGGTTAACTCCCAATGAAATGGCTTTTTCTAACTTAGAACCGGCATCTTCTCCTACTACTAAATAATCTGTTTTTTTACTCACAGAATCAGTCACTTTTCCGCCGGCTTTTTGAATCAATGTCTTGGCTTCATCGCGTTTTAGAGTTGGCAATGTACCCGTAATTACGAAAGTTTTTCCAGCAAACTTTTCATTAATATTATTAACTGTTTCTGT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTCCCTGAAATCGGAATTAATGGAAAC # Alternate repeat : CTTTACCGATTCCCTCAAATCGGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 18989-17587 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHJ01000032.1 Nostoc linckia z18 scaffold33.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 18988 37 100.0 36 ..................................... ATCGAAGTTGCTCAAGCTTACGTTTCTCAGACTGGT 18915 37 100.0 36 ..................................... GTTACCTCAAGAAGTTGTAGTACAAGCAATTAAGTT 18842 37 100.0 36 ..................................... TGAGTTCATAACTCTATCAAAAGACCAAATAAAACT 18769 37 100.0 34 ..................................... GTGATTCGTGAGATTCAAATTCTGCTAAATGGTG 18698 37 100.0 34 ..................................... TCTTCATCTATCTCGCATGGGTCTACAGCTAAGA 18627 37 100.0 35 ..................................... ATAGGAAAAGGTGAAAACCCAGCAACCGACAAGGA 18555 37 100.0 34 ..................................... TTAGATATTGACTATTACACTCAGAGTAGTTTAA 18484 37 100.0 38 ..................................... ACTGGTGTAGCAACTTTAGGAAGTGCCGCAGTGACCGG 18409 37 100.0 36 ..................................... CAAGAGAAAAGTATCGTGACGCCACTAGATTAACAA 18336 37 100.0 35 ..................................... GAAAACTTTGCAGAAGATGAACAGCTAGACTTTGC 18264 37 100.0 32 ..................................... GAATTCTAGGCATATTCCCAATCATCGCCAAT 18195 37 100.0 34 ..................................... AGAATCCATGCGATTGCTCGCGTCTTTCCCTTTG 18124 37 100.0 31 ..................................... TGGATGGTATGGAGTGCTACCAACTGTTAGA 18056 37 100.0 39 ..................................... TTCGAGAGTACGCAAGACACCTTACAGAAACTTGTTGTA 17980 37 100.0 35 ..................................... CAACTCAAATTAATCGGTGGTAAAGGATCTTCTGA 17908 37 100.0 35 ..................................... CCCAGTCAATAAAAATTCCAGATACAGGGTAGTCG 17836 37 100.0 33 ..................................... TATGAGGAGAATAGCGTTGAATATTTACAACAG 17766 37 100.0 34 ..................................... ATCATTTAGGCGTGATAACCCCATAAATGCCTGC 17695 37 97.3 35 ...........C......................... CTGATTTACTGCGAGTTAAGGCAACATAAAGCAGA 17623 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 20 37 99.9 35 GTTACAATTTTTCTTAATCCCTATTAGGGATTGAAAC # Left flank : CAATAAATATTCTGAATTGTTCGCTGCAAACTTTTGTATCGCTTTTCATGTAACTGCATACCCTCAGGTAAAGTTAGATCGGCGGCTATAAGTAGGCCGATGTAAATAATTATTGTTGGGATAAGGCAGTTCTTGCTGGGAGCAGGGAGCAGGGAGCAGGGGGAGAAAGAGTTTGAGCCTTATTTACTTTTCTTTGCATAGTTTGGTTTTATTTCACCGACTTACTTAGTCAAAAGTGAAAAGACCAGCAAACGCCACAAAATTTTTATCCAAATGCGCGGATGGGTAGGTGTAGAAAATCAACCTTTGACAAAAATCTCTGTGTTCCTCTCAGCACAAACCTTTCAGGCAAAAGTAAATCAAAATCACCCGCGCATCATGCCCAGACAGCATTTCAGCGATTTAGTGTCAATCAATTGAAATTTTCTAGTGATACAATTGACCCATCCGCGCAACTGAACCTTGAAAACCAAATACACATTAGCTCTAAGGCTTTGGCG # Right flank : TTAAAATTATTAAGTCAACCATGAAAAATAAAGGCGTTGCTGATTGAAAGTATGAATTACTTTCACACATAGTCAATTAAAAATTATTTAAATAATTGTATATTCACCTTGGGCGAGAGCATCTAACTTCGCTCGGTCTAATACCAAAATTTTTCCGCCTCGATGATAGCGGACGCTCGAATGGATTTGCTTGAACAATCTTACACACTCTTCATAGGTAATTCCAATGCTACGAGCAATTTGATAATATGGTAAACGCGATCGCAACAATTCTCCCTGTTCAGTTACTTCCGTTCCTTCTGTAAGTGCTGAGAACTTCAGGTATTGCGCTAAACGCACAATTGCGCGTTCTGAAACTAATCCATGCACCGTTTGATGTAGATGCTGGAGACGCTCTGTCAAAACTGCAATAATCCGCAAAGCCACTTCTGGAGTATGGTGAATCAGTGCTAGTAAAGCAGTACGCTCCAGCATCAGAATTTTGCAGTTTTGCTGTGCTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTTTCTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 57519-58522 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHJ01000007.1 Nostoc linckia z18 scaffold8.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 57519 37 100.0 35 ..................................... GAAATATCCACCCCAACCTACAACATGATGCCAGT 57591 37 100.0 36 ..................................... TATCTAACAGATCTTTATCTTCTATATTAATTTCAA 57664 37 100.0 37 ..................................... TTTTAACATTAAATACTCTTCTCTCTCTTTCGGAGGG 57738 37 100.0 39 ..................................... GGCATCAATAAGGGAATTATTACTATATACATAAAGGAA 57814 37 100.0 34 ..................................... TGATTGCTTTCACGTTGCTGGCATAGTTAGCAAC 57885 37 100.0 36 ..................................... CCTGATTTGGCAGGTGTCCAATCTAAGGATGACCAA 57958 37 100.0 35 ..................................... ATTGCTCAGGGGTAAATCGGAGTCGGCGCGGTATT 58030 37 100.0 36 ..................................... GTCTTTAGCCCCAGATGTTGCTCCATCCAAATAAGA 58103 37 100.0 47 ..................................... TTGATTTGGGTGATGCGATCGTTTAGCCCATCTTTGATGTAGTCAGC 58187 37 100.0 34 ..................................... TCTTAAAGTAGAAATTGAACTTACCGATAAGTTC 58258 37 97.3 37 ......................T.............. GAATTGATTTTGTGCTGGAGTTCTGGCTCTTGGAGCA 58332 37 100.0 37 ..................................... TAAAGTTTCACCATTTACTCTGTACAGATGGGGTGAA 58406 37 100.0 43 ..................................... TTTTCCAAAGATACACATGCAAAAATGTGCATATCAGTCACAG 58486 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 14 37 99.8 37 GTCTCCAATAACAATTTGGAGGCGAATTAATGGAAAC # Left flank : AGAGTGAACACAGCCCAAATCCAATTAATACCCCACGCATGGATTTGTAAACCGGCGGATACCAGCAAAAAAATGATAATAAAAGCGATGGGCATTGCCAACACAACCCATTGCCACAGCTTTAATCGCACCATTACCCTACACCTTTTAAATCACCTTGTAAAAAGTTTATCGTTTTCAATTTGGGTAGGATAATCGTTCTATGGGTTGAGTAATGAGTTATGACTGTTGACTGGGGGTTTTAGCAATGATTTGCGCGGAGCTTGGCTGTTTTTTTAGACAGTAGAATATTTTAGGCTGAAATCTTTACTGTGATTGTATTTGAGCGATTTTTGCTAAAAATAGATCCGCGCAAGCTTTGAAAACGTTGTGTTACAAGGTTTTCAAGGATTTTTGTTTAACCAAAATCTTGACAAGCGATCGCTCAAACGTTAATTTTGAATAGACCCGCGCAAACAGACCTTACAACCCTGTTTTTGCAAGCCTCCCAGAGTCTTGCT # Right flank : CATACGTTCAGAAATTATAAACCCGCTTAAGCGGGTTTGTTTGTTTAGATACTATCTATAATTCAATACGATTCAGTTAAGCATTTCTTCCTTCTCTTTGCGTCCTTTGCGTCCTTTGCGGTTCGTTAAAAAAATTGACATTGACAAAGACTTTTAGCCTTAACTAAACCGTATTAGTCTATAATCCAATACACTTCAGATAACACCAAAACACTTGTAGACAGCGATTTATCGCGTCTGATAGTCCTCTGCCTTTCTTGATAAATAGAAGAACTAAATTAAACCTAACTCGATATCGCCGGGTTTCCACACTTCGACAGGCTCCCTTCGACAAGCTCACGGCGGCGCAGTGCATCGCTGCACTCAACCCTCTTGGAATAAGCTTAACGAGCATTGAGCAAAGTCGAAATGCGTCTTCTAAATAATTGTGTCCACCTACTTCAACTAAACCTTATTTAAAATTCTGAATTCTGACTCCTGACTCCTGACTCCTGACTCCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCAATAACAATTTGGAGGCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 8031-4887 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHJ01000125.1 Nostoc linckia z18 scaffold131.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 8030 37 100.0 35 ..................................... ATCACTATGCATAGCCGTTCAACATAGTCAAAACA 7958 37 100.0 35 ..................................... AAAACTTAGGGTGAGTTTGCCAAACAGTGTCACCA 7886 37 100.0 39 ..................................... TGAAATGATTGGTTATAGGTTCCATTACACACCAGCCAT 7810 37 100.0 36 ..................................... AAAATCTTACCGTGATTTATACTCTGAAGGTGTTAT 7737 37 100.0 39 ..................................... AAACATCCTATGTAATTGTCAACTATTGGCACGGTTTAA 7661 37 100.0 37 ..................................... GTGAAGCTACACCCTACGAACTGCTAACAGATCCTAA 7587 37 100.0 37 ..................................... ACTTGCCACCGGCACCAGGATGAATCTCAAGAATGGA 7513 37 100.0 39 ..................................... AACTTATGAAGGGTATGATTGTCTTATTCCAGTTAAGGA 7437 37 100.0 39 ..................................... AATGAGAGAAGACAAGCAGCACAAGAGCTATGAATGGCA 7361 37 100.0 36 ..................................... AACCTCGATAAAAATGGTAGGCCTATTGCAACTCAG 7288 37 100.0 39 ..................................... TGGGTACTGTGGGAAGTCTTACAGCGGGGATGCTTGGGA 7212 37 100.0 40 ..................................... AATTTTCCACCGTGATTTGTACGCCCAGAGTGGGCATAAA 7135 37 100.0 38 ..................................... TGGTCGAAGTATCTTCAGCGCCGCCGTCGCTACCCCAG 7060 37 100.0 36 ..................................... ATAAATAGCATCTGCAAGCTTGTTATCAGCAATCAA 6987 37 100.0 39 ..................................... AAAATCAGACCCCATCGTGGGAGTACGCATTCACAACCA 6911 37 100.0 36 ..................................... AATTAATAATTATCAAAAAAGAGTCTGTGTCAGCTA 6838 37 100.0 36 ..................................... ATAACATAACCTATATTGGAAGTGACAACTATTTAC 6765 37 100.0 37 ..................................... ATATGGATCTGGAGTACCGTACTCGTTCGGATACGGA 6691 37 100.0 39 ..................................... ACTAAACTGTGGCTTGCGGGGGAACCTCCAGCACCAACA 6615 37 100.0 37 ..................................... AACTCTTCAAAGTCTTTGTACCCACCTTGGGGTTTAT 6541 37 100.0 36 ..................................... GATAAGTTATGGCACTCGTTAAATATAAGTGACTTA 6468 37 100.0 33 ..................................... ACTTACAAAACTCTGCAATGTTTGAAAACTTAG 6398 37 100.0 37 ..................................... GTCCTGAACAATTTATCGCCGATTTTGACGAATCGAC 6324 37 100.0 37 ..................................... ATTATCCCCTTTATTCCATTGATTCTTCAAATACCAG 6250 37 100.0 37 ..................................... GATTCCGCTTGTCTTTTTTACCAGTAAGGGCGATCGC 6176 37 100.0 35 ..................................... TTGAAGCGTAAAAACGAGTATTAGAAGAATCTACC 6104 37 100.0 38 ..................................... AATCAAAGAGCATTATCACATGATTAATATCACTGGCA 6029 37 100.0 36 ..................................... CTTTAGCGTGAGTGATAGCTCTATCTGTCAGAACAT 5956 37 100.0 36 ..................................... CAGCCCGTAACCCGATCGCTGATCGAAGAATAGTTG 5883 37 100.0 39 ..................................... TTTTGTGGTTATGTACGGTTTTTGTGTTGCGATCGTAAT 5807 37 100.0 37 ..................................... CGCCAGATGCTAAACACCCTGCATATGAGTATGCCAA 5733 37 100.0 36 ..................................... ATCGCATCCTAGATATAGATGTCGGCGTCACCCCTA 5660 37 100.0 40 ..................................... TATGCAGAGCATCTAATACCGTACCCCACACGCACCTAAA 5583 37 100.0 37 ..................................... AACCGCCTTGACGGACAAGTTCGCTACATTACCGATC 5509 37 100.0 36 ..................................... CAGTGTGATTGTGGCAGGATCGTTGAAGCAACTAGA 5436 37 100.0 34 ..................................... TGAAGTTTATACCCAAGTTACCGAGGCGGTTTAC 5365 37 100.0 36 ..................................... ATCGCTGATTACTAATCCAAAGAGCAATTATTCCTC 5292 37 100.0 37 ..................................... CGGATCTAAAACTTGGAGCGACGATGACTTGCACTGG 5218 37 100.0 38 ..................................... ATTCAATGGGCGACTGATTGGGGAATCGCCACCGGACT 5143 37 100.0 38 ..................................... GTTGGTGTGGGAAGTTGTCGCTCTGGCGTAGATCGTTG 5068 37 100.0 38 ..................................... TAGCATGGATGAAAAACAAGGCACGGAACCCAACTTGA 4993 37 100.0 33 ..................................... CAACAATTCGACAAGATATTGCAACCTGGGCAG 4923 37 97.3 0 ......................T.............. | ========== ====== ====== ====== ===================================== ======================================== ================== 43 37 99.9 37 CTTTCTATTAAATGAAACCCGGCAACGGGATTGAAAC # Left flank : GCGATGACAGAGGACAAACACATCCCGATGGTGGCTGAAGCTTGGGAGCCTTTTGAGCAACAAGACATTCAGCAATACACCCAAGCGGACAATTCTCAACTCCTGGGTTGAGTTGAGAGTAGAGGGGTTGTAAAAAAAGCTTCACCTGACTTACCCTGTGTTATTTGCACCCAGTTTAGTACTGGTTTCGGGAATATTGGCATCAAAAATTGATATCAATGCTTTTTCTTTGCTTGACCCTAGATAACTTTTGTAAAGTTAGATTTTGTGGAATTGGGAAAATGAGCTTATAATCTGAACCAAGTTAATTTTTGGCAGGGGAAAGCACGGGCAAAAACCCCCCACCTCCCGCCAAATCCACAGAACCTTGACAATTCAATACTTTCAGCCTTTGGAGTATTGTTGAGTTCGCTGTTTGCAACGGCTGAAATGGACTTTTAAAACAGTCCTGCCAAATTTACTTCTAGAACTTGGTTTATCACTAGGTTCTGGCTGGCGGA # Right flank : AAAATAAAGAGTGCTAGATTTTCACTTAGCACTGTCAAGATTTTTAATTTATCTACTATTTTTGACCTTGATTAACTCTTTTTTCCAATTCAGCTTCAGCCTCTTCAATCGACATTAGTCTTGGATTTGGATTAGCCGCGTGCAAGCGATCGACATAAGCATGAAAAGCTTCAGTATTTTCCGGATTTTGCAATACGTAAGCTCGTAATTCAGCATCCGTCATGTTTGCAAAATTGGGCTGTGTCATTTTGTAACCACCTCCCCGTTAGGATAAATTTCTATCTCTATTGTCTCTTTGACTCAATACGGTTCAGTTAAGGCTAAAACTCTTTGTAAAGATTAATTTTTTTAACGAACCGCAGAGGCGCAGAGAACGCAGAGAGAAAGAGAAAATGCTTAACTGAACTGTATTGCTTTTTGACTAACGTTACTATGCGTTTTGTCCTTTCGTCCATTCGCACTAGATTTATTGGTCGCAGCAGATTGCTCATTCTCACCGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTATTAAATGAAACCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 19464-21393 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHJ01000125.1 Nostoc linckia z18 scaffold131.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 19464 37 100.0 34 ..................................... ATCAAAAAGCCCTGGAATGCTTTACACGTTCCAG 19535 37 100.0 33 ..................................... ATTCTGCTGTGCCGAATGTCAAGCCGCCGTCAT 19605 37 100.0 35 ..................................... TAACCTTGGATAAATCTGTCCTACTGTTGGAAGTG 19677 37 100.0 34 ..................................... ATCTCGCCGATTGGTTGAATTAACACCTACACTT 19748 37 100.0 38 ..................................... TCAATCAAGGCTTTCAAATCCTGTTGTCTATGTTCAGA 19823 37 100.0 35 ..................................... AAAAAGTCACTCTTTAAACGTCTTACATTTAACAA 19895 37 100.0 33 ..................................... CAACAGTTACATCCCAAATTACTAGCGCTTTAA 19965 37 100.0 37 ..................................... ACACGCTCGAACGGCTTGCACGTCAACAGCAAACACT 20039 37 100.0 35 ..................................... AGTATAGTTGCACCCTGGATTAATAAAGAAAATAA 20111 37 100.0 36 ..................................... TTTCATTAGAAACACTAGCTTATATACCGTACTTTG 20184 37 100.0 35 ..................................... TTTAAGTTCTATACCTGAGATTGATGTATGACAAC 20256 37 100.0 37 ..................................... ATAACCTTCCTATTTCGTAATTACCAAATCCAAATAA 20330 37 100.0 34 ..................................... TCTAGAAGATTAGGACAAAGATAAAATATAAGTG 20401 37 100.0 38 ..................................... ACTTATATAAAATCTCTATATACCCGGTTAACCCCAAA 20476 37 100.0 37 ..................................... AATATAGAGGGCAATTAGGGGCTTATTGGTGTGCTAG 20550 37 100.0 37 ..................................... GATAATATGTTTTCTGGTTTTTCAGTAATATATACCC 20624 37 100.0 34 ..................................... TCTCGGCTGACATCTCCCAAAAGTTATCTTGATT 20695 37 100.0 37 ..................................... GTTTTACCACTTCCGTCTAATCCTTCAAATGCGATCC 20769 37 100.0 36 ..................................... TGAGGTATCCGCCATTGCTTCGGGCTTCTGACTGAA 20842 37 100.0 37 ..................................... TCTTTCATTGATGTGCGCTATCTCTACTGGACTAGGA 20916 37 100.0 35 ..................................... TCTTTGCTGGTGGGACAATCTGTAATTCGTGGTGA 20988 37 100.0 37 ..................................... TTAATTCTGTTTGTGCTTGTCTCACTTGCTCTTTTAA 21062 37 100.0 37 ..................................... AATTTTTACCGTTTTTACGTGATTCAAGAATTTCTAA 21136 37 97.3 34 .............C....................... ACTGATAACTGATTACTAATAAAACTATTGTGAT 21207 37 100.0 36 ..................................... ACGATAATTTTGTTCTTGAGGATGTCTCGGCTATTC 21280 37 100.0 40 ..................................... GGCTCAACTACTTACTCAGTGGCCGGTTTGCCTGATGCGA 21357 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 27 37 99.9 36 CTTTCAATTAAATGAAACCCGGCAACGGGATTGAAAC # Left flank : ACATAAAATGCTTTGTGGTTACGGAACTTGGACGCAATACAGCGTATTTGAATGTTTTTTGACCGCCGTACAATTTGCGAAACTCAAGGTGCAAGTTGAAAAGTTGATTAAACCAGCCGAAGATTCAGTGCGTATCTATGTGTTGGATGCTGGCGCAGTGCGTAAGACTATTACCTACGGTTCCGAACAACCTCGACAACAGGAGACGATAATCTTATGATGTTTGACTGTTGATTGTTGACTGTTGATTGACAACTTCCACAACAGGAGACAATAATATTATGATGCTAATACAATGCTAGTAAAGTTTTTTGGCAGGGGAAAGCACGGGCAAAAACCCCCCACCTCCCGCCAAATCGTCAGAACCTTGACAATTGAATATTTTTAGCGTTTTGAGTTCTGTTGAGTTCGCTGTTTACAACGGCTGAAATCGACTTTGAAAACACTCCCGCCAAATTTGCTTCTAGAACTTGGCCTATAACTACGTTCTGGCTGGCGGA # Right flank : CAGCTATGGCAGATATAACAAACCACAGGACAAACTTTCAATTTCAATGAAACCCGATCGCTCTATTACAACCAAAAATCTCAACACTAGGCAAAATAGAACTGAAAACGGTTTTCAAATTATCATAATTAAAAATTCCCATGCTTCAAAGTCAGCGTTTATCATAAATAAAAAAATTATTTATTATGAATGCTGAAGATTTTTTCCACCAAGGATTAAACAAAAATTTGCAAGGGGAATACCAAGCAGCCGTTACAGCTTACACCCAAGCAATTAATCTCAATCCAAATTACGCCGAAGCATACCATAATCGAGGAATTATTTCAAGTAGTCTCACAGATTATCACAGTGCGATCGCCAATTTTAATCGCGCCATTGAAATCAATCCCAATTTTGCCACAGCCTACTATCACCGCGCTAATGCACGCTACTTTCTAGGAGATTACGAACAAGCCATCGCTGACCATAACCAAGCATTGGCAATTGACCCCAATCTCGCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAATTAAATGAAACCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1631-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHJ01000149.1 Nostoc linckia z18 scaffold162.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1630 36 100.0 37 .................................... TTTACCACTACCTCAGCAAGTGGTTTTTCGTCGTCTG 1557 36 100.0 37 .................................... AAGAATCACAAAAAGAATGAAACAGACGACAGCGGTT 1484 36 100.0 38 .................................... ACCATCCGTGATACCTCCTCCAATAATTTCATTAGTGC 1410 36 100.0 36 .................................... GCATATACTTCTGAAGTGTTGGTTTGTGGGAAAGAT 1338 36 100.0 32 .................................... TCGTATTGCGCTTGATTGGCAGCTTGAACAAG 1270 36 100.0 35 .................................... TTTACCGTGGCGTATGGGCTTTTCGCTTTAACTTC 1199 36 100.0 37 .................................... TTTGTATCAGGTGAACTCATGCTTCCGCTTTTATCGA 1126 36 100.0 35 .................................... CTGTCCGTAAACCTCAACTGGCACATATTCGACAT 1055 36 97.2 38 ..........................G......... GTTTGTAAATTACCCTTAGCACTATTTTGTTCCCATCC 981 36 97.2 36 ..........................G......... TTTTTACGGAACTATCTTGTAGTAGAATTGCGTATT 909 36 97.2 36 ..........................G......... CTTGCGGGGATGGGGCCGTACCAGTCACGCCGAGCG 837 36 97.2 35 ..........................G......... TTTTCTTGTAAGATTGATTTCCTAAATTCCCAGTA 766 36 97.2 35 ..........................G......... TTCAGAATGCCATCGCTGGCTTTTGTTTCAATTTC 695 36 97.2 39 ..........................G......... TTTCCTGTTGCGCGATGATTGCAAAAATGTCGCGGTACA 620 36 91.7 36 ..........C....G..........G......... TTCTTAGCTGCGCCGGCAAAAGTGTCGTCGTCTTGC 548 36 91.7 36 ..........C....G..........G......... CATTGAGCTACGAGCTTCATCCTGTATACGCAGCTG 476 36 94.4 34 ...............G..........G......... AAAGGGGTCATCGGCGACGACGACCACATCCTTG 406 36 91.7 39 ..........C....A..........G......... GCCTAACACACCATAGACAAACAGCTGTTGTTCGGCCGA 331 36 100.0 37 .................................... CCTTTGTTTCGTAGATAGCCGGCGAGTAAACCCGCCA 258 36 100.0 36 .................................... CGTCTCACCAGTCTCGGTGTCTGTGATCTCCACCGA 186 36 91.7 39 ..........C....A..........G......... CTTCTGGTTAGGCACTCCGTTGCGTTCCAGTTGGAAGCA 111 36 91.7 39 ..........C....A..........G......... CTTCTGGTTAGGCACTCCGTTGCGTTCCAGTTGGAAGCA 36 36 91.7 0 ..........C....A..........G......... | ========== ====== ====== ====== ==================================== ======================================= ================== 23 36 96.9 36 CTTTACCGATTGCTTTAAATCGGAATTAATGGAAAC # Left flank : TGGGGGCGAACAACCGTTATTGGTGTCAACTTAACGTAAAACCCTTGTAATGACGTTAGAGCAAACTTACTCAATTACTAACTAATCGACAGTCACCCCACCCCGGTTTTGTCTAAAGCCAAAACCTCCCCTCCCCGCCTGCGGGGAGGGGATTGAGGGGTGGGGTAAAATGGCTGTGGGACAAGCGTTTAAGCTTAAGTTGACACCAATGAACAACCGTTCGCCCCTACAACGTGGTTTATTTACCTGAAAATTGCTGTAAAATCATGTGTTGCGATGTGTTGACAATGCACCCTACTAAGGAAGTTTGAAATGTTCATCGACACCACTCGCCGAATGCCCGAAACCCTATATTTTTCGTTAACTGGTGTCGATGCTTTGCAGGGCAAGGATTTGAGCTATGTATTTTACTTAATTTTCCACCAGGTATATAATCTTTTTCAGAGTGGTGTCGATTTAGCGGCTAAAACCCTGACTGGGCAAAGCCTCCTGAACGAACT # Right flank : C # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCTTTAAATCGGAATTAATGGAAAC # Alternate repeat : CTTTACCGATTGCTTTAAATCGGAATGAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 38383-39808 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHJ01000016.1 Nostoc linckia z18 scaffold17.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 38383 37 100.0 38 ..................................... ACTTCAAAAGTGCTTACGTGGTTTGGGAACCTGAAAGG 38458 37 100.0 36 ..................................... GTTTCTATTTTAACCGTACTTATACGGATTAATGTT 38531 37 100.0 37 ..................................... TTTTTCAAAAATTTTAAAAATTATCACCACCCTGGAA 38605 37 100.0 38 ..................................... ACTCAAGACGCGATGCCAAAAGGTATCAATTTAGATTA 38680 37 100.0 37 ..................................... AATATACGTAGGCTTTCTGAACTCAATGATTTTATGC 38754 37 100.0 40 ..................................... AATTATTCATCTCGCTTCGGTCTTTATTGGATATTTACAA 38831 37 100.0 37 ..................................... GATTCAACGACATTATATAAACGGGCAAATAATTATT 38905 37 100.0 36 ..................................... TTATCAAAACTGCAACCGAAATAAACGCAATCACTA 38978 37 100.0 34 ..................................... TAACATCTAAAGAGGATGTAGTTCCAGGGGCTGT 39049 37 100.0 36 ..................................... CTGCTGGTTCTACCCTTGGTGGGTGGGGTGGTGCAA 39122 37 100.0 34 ..................................... GTAGAACTCCGGGCTATGCAGCTGTACAAGCTGA 39193 37 100.0 35 ..................................... CTGTGCTTACAAATCCATTGCCTGCTGGGGCTTCG 39265 37 100.0 33 ..................................... AACCAAGATGGAGATTCGTAAAAATTGAGGGGA 39335 37 100.0 38 ..................................... AACAAGCAACCCAATTAGCATCCCTGGTCTTCCACTCA 39410 37 100.0 37 ..................................... TTCAAAAATACTTAAAACCCAATGAATCAGAAGCCGC 39484 37 100.0 37 ..................................... GAAACCCTCAATTCACATGCCCCGCACGGTTAGTCGG 39558 35 91.9 34 ............................A..--.... GAGGGACACACAAAAAACAAAAGCAATCAGAAGT 39627 37 70.3 37 A..........GT..T...T..C..AT..T..A...T CAGGAAAAATGAGACTTTGCTCGATAATACTTTTTAC 39701 37 73.0 33 ....A..A.G.AT...T........AA...C...G.. GATGTTTGGAAATTGACAATTTTTTTGGAGAGA 39771 37 70.3 0 ....T..A..TT...TT.AAA.T...T.......... | C [39777] ========== ====== ====== ====== ===================================== ======================================== ================== 20 37 95.3 36 GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Left flank : ATTAGCGATCGCGGCTTACGATTCTCGCAAAATAAACTGATTGACAAAACACCGAACCTTGACAATAGAATGAAAATATTCAATAGCGCCGCAGTTCATACTTGTTACAAGTCTCTGTGCTGCGTAAATGTGGGTTAGTTTGACTGCTGTTAAACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGATGCTGCTGTCCCTTGTGGATAGGAATTAGGTGCGCCCCCAGTAATAGAGGTGCGGGTTTACCGCAGTGGTGGCTACTGAATCACCTCCGACCAAGGAGGAACCCACCTTAATTATTTTTTGGCATGGTAAAGCAGGGGCGATTTCCCTGGCACTCCTGCCAAAACTTTAAATCGCTTGTTTAATAAGGTTTATAGCCTTTAATGTGTCAGTTGATTTACTTTTTTAAGTATTAACTGACCAGCGATTTTGGGAGACATGACAAAAATGCCTTCAGAACTATTGGTAAATCAAGAGTTTGAAGCGCAGA # Right flank : GATTGGTAAAAGTCATGGAATTCTTGGACTAATAGGACAAAAACTTGTCAACTTACAGCAATTTTCATTTCTTTGAACCACAAATCCCCATAGGGGGGTAAGGTCTTGCTGGCAAGGTTGATGTATGACAGTAACACACCACGCTGAAAAGTTTAACGATATTTTTAACGATATTATTTTGTTAATGGTTAGCTAACACAATTGGATTACATAGTGAATGCGGACATTATTTTGGCAATACTGACATTAATTTGTCAACGCGGACAAATAATTTGGCAATCGACAACAGTCAACAGTCACCAACTTTCATCGAACTCACGTTAAGTTAAATTCCGTGACTTTTACCAATTACCCAATTACGTCGGAAAAAACGAGCTAAGGCTGACTCTTCTAGTGATAAATAAATTGGGCGTCCGTGGGGACAGGTGCGGGGGTTGCGAGTGCGTTGCCAATCATCTAAAAGTGTCTGCATTTGTTGTAGATTCAATGGCGTACCGTTC # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-35] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 14480-14006 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHJ01000161.1 Nostoc linckia z18 scaffold179.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 14479 35 100.0 38 ................................... ACGATCTGTTCCAGATGTTCCCCAAACATTTACAGATG 14406 35 100.0 39 ................................... GACTGAGAAAAAAGGAAAAAACTAAGCCATAAGCTACCT 14332 35 100.0 39 ................................... TAGAGCGTTCCTTCTCTGACAAAAGTCGAAGCAGTCCAG 14258 35 100.0 37 ................................... TTAACTGAAACTCGTTGAAAGTTTCATGGGTTAGGGT 14186 35 100.0 37 ................................... AGTTCAAAATCCAGGTACGGCTGAAAGACATACTGAT 14114 35 100.0 39 ................................... CCTTGAATTCTCTTTACTAATTGAGATGATAATGGCAGA 14040 35 97.1 0 ..................................T | ========== ====== ====== ====== =================================== ======================================= ================== 7 35 99.6 38 CTTTTAGCTTCTTCGGAAGTTGAATTAATGGAAAC # Left flank : GAGTTTGTAGTAAGCACTTCAGTGCTTAAAAATCAAGGACTAAAGTCCTAACTACAAACTTATTTTACCCCTTAGAACTAATGCGATAGACCACTAGGAAACGCTATAAGAAAGCCTATCCCAATAAAAAAGTTGAAGGTTTATTCAACGGCAAGCCACTCTAATCAATAGAATTAGCCCTCGCAAAACTGCTAGGGCTGTTTGAATGTTGTGAAAAATTGCCAAGCCAAAGAAAGTAGTGATTTTTAAGATGGATGTATCATCCTTTGACTCGGAAAAAATAGTTCGGATAATGTAAAGAAATGTAAATTTGCGGGGGGTAAGCAATGGCTGAAACCCTTATTCTATCGTTGACCCCCGCAAATGCTCTCTGGGTAAGGGTTTGAGGGTTTTTATCTGGCGTTTATTGCTAGTAATTCCTATTTATTGGAGCAATATCTTGACCCCCGCAAAAATGAGGGTGTACAATCCAGTGATGGTAAGCCTTCTAGAAGGCTACC # Right flank : GTAAAAATATTTCTAAAACAAGATACCCAACTTTTTTTAAGTCGGGTATCTTTTTTCAGGAATATAGGACAACACCTTTATTTAAGGTTTATTGGTAAAAAACTGGTTTTTTAGACGCGATTCATCACGTCTTTACATGAATAATTTTATGCTTAACTGAATTGTATTAGTATATAGGACTTATGCATTAAGCAGATATCATATTATTTTGCAATACAACAGGGTACGATCGCATCTGTACCAGACTGAGCTAAATCGCCTTGTTTGAGTAGCTCGATCCAAGCCGATATAATTTTTGGATCTTTGTCTTTGGTATTTTGTAAATTTTCTCCTAAAGTTGTTAAAGCATCATACCAAAGACCATGTTTTGCAAAAAAACTAGCTTTTTCCAATGGGGTTTTAGCGGCTGCAAGTTGTTGTGATGATGCATTGAGAGTCACTTGTGTGATTGAACCTTGGACGTAAACAGCAGCAGATGGTTTGTCAGGATCGCAATAAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAGCTTCTTCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 4069-2792 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAHJ01000164.1 Nostoc linckia z18 scaffold183.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 4068 36 100.0 37 .................................... CTAATGAAGTTTGGTAAAGAAAGGGTTTCAACTAATT 3995 36 100.0 32 .................................... TTAAAGATTTTTAGTTCAACAATTATGCCAAA 3927 36 100.0 36 .................................... TTTATTGCGTTCCGGATTACCAATATTTTGGATGGA 3855 36 100.0 37 .................................... AGACTGAGTTGTGGTTGCCACAATCACCAGTAGGAAG 3782 36 100.0 37 .................................... ATATTCTTGTAATTGATTTTCAAGGATTAATGCACTA 3709 36 100.0 37 .................................... ATTAAGCCAAATGTTGCCTTAAGGTTTTCTTCAACCC 3636 36 100.0 39 .................................... TTCTTGATTCCCCCAGTAGAGAAGCGAGATTTCGTCCGG 3561 36 100.0 35 .................................... CTTGCTGGTTCCAAATCTGCGAGATTTGCCTTTAT 3490 36 100.0 37 .................................... ACGAGCAGTCCTGCGGTTGAACAGCATACAGCGTGTG 3417 36 100.0 36 .................................... GATTGATGTAAACATAAACATTAAACTCTTGAACAA 3345 36 100.0 40 .................................... AGCATTGAATGGTTGGTCGGGTTCCCATGAACCGCAACCG 3269 36 100.0 41 .................................... TTGCAGTAGTAGCAACTGCGCTGTTGGCGACTGCATTTAGC 3192 36 100.0 36 .................................... AATGTTATAAGCAATCCTCCAACATCACCTTGTATG 3120 36 97.2 37 ..........C......................... ATTATGGTTGCTTCAAAATCGTTTTCGCAGTCTCTGT 3047 36 97.2 37 ..........C......................... TCGCCTTTCATGAGAAAATGCAGAACGCGGTTTTTTA 2974 36 97.2 37 ..........C......................... TCGCCTTTCATGAGAAAATGCAGAATGCGGTTTTTTA 2901 36 97.2 38 ..........C......................... TCAAATTCTTCACTGGTAACTTGACACTCACCCATTGC 2827 36 83.3 0 T.........C..TAA...................T | ========== ====== ====== ====== ==================================== ========================================= ================== 18 36 98.5 37 CTTTACCGATTGCCCTAAATCGGAATTAATGGAAAC # Left flank : GACACCCATCCCACAATAAACAATGTTTTTAAGTAGATGGACATAAATAAATATAATATGTTCTGTCATTGCGTTCGCGTAGCGTCTCGTAGAGAGCGAAGCGAAGCAATCCCAGAGACTTTGCGATTGCTTCGCTTCGCTCGCAATGACATCTTAGATTTAATCATGACTATCTACTTAGTTGCGCCTTAGCACCTTCCAAACAATAAAGCTAATGCACAACTTTAGTCTAGACACGCCACTACCTTTTCTAATGAGGAAGATTTATCTCACGCAAAGGCGCATAGTCGCACAGAAGATGAGGAGTTTTAGATGTTCATCGACACCAGTCGGGAAATTGCCAAAACACTATATTTTTCGTTGAGTGGTGTCGATTCCTTGCTGCGTAACGATTTGAGGTATGTGTGTTGTTGAATTTCACACAACATATATAATGTTTTTTAGAGTGGTGTCGATTTGGCGGCTGAAAGCCTTACGGGGCAAAGGCTCCTGAACGAACT # Right flank : CTATCGAAAAGCCAGATCCCCGACTTCTAAGTCTGGGATCTTTTTTTTCACGAAGGATTTAATTGCTTATTGCATTAAAATCTGACGGATTAAAATACTCATCATCTCGCCAGAATTACCCATTGGTACTAATGGACTTTACTCGCCAACGTTAGCCCAGCCAATGACTTACAAATAATGAATTGTGCTGGTAAGTAGGTCAACTTAATTAAACATAAAACAATGGTAGGGTGCGTTATCGCAAAGCGTAACGCACCTCAATTGCTATAGTACAGTCTACAGAGGTGCGTTAGCCTACGGCATAAGACACCCTACATTTATTGACATCTACGTATGACGTTTTTTTAGGTTGAGCTACTTAACGGCTTTTACATAACCTATCAATGTATTGCCTAAACTAACGTAATTTTTCGTTAGCTAACCATTTAAACTACTTATCCTAACGTTGCAAAAAAGCAATAAACTGTTACAACATCAAACGATGTAGAATTTTTGTTGAA # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTGCCCTAAATCGGAATTAATGGAAAC # Alternate repeat : CTTTACCGATCGCCCTAAATCGGAATTAATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //