Array 1 45578-44959 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORE01000012.1 Bacillus sp. J14TS2 sequence012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 45577 32 100.0 33 ................................ TTTCTGATATTGCTTAACAGCCGTTTGGATATC 45512 32 100.0 33 ................................ TAAAAAACGACCTAAACACGAACATTTAAATAG 45447 32 100.0 33 ................................ ACTAAAATTGAATCTCATTAATAAGTACATAAA 45382 32 100.0 34 ................................ TCGTTTGCATTACATAGCCTCCTGTTCAACTTGC 45316 32 100.0 33 ................................ AATGAGCAATGTGAGATTGCGGTCTCTGATGCA 45251 32 100.0 34 ................................ AAATAAATATGGATCACTTTCTTTGATGGCATTT 45185 32 100.0 33 ................................ AACTGGAAAAATCCTAAGAGTGAAAATTTTAAT 45120 32 100.0 33 ................................ GGTAAGCCAGTCGGAAATGTCCTCGGGCGTGAC 45055 32 100.0 33 ................................ AAAGCTAATGGGTCTTTTAGACCGGTATGCACC 44990 32 93.8 0 ..........TT.................... | ========== ====== ====== ====== ================================ ================================== ================== 10 32 99.4 33 GTCGCACCTTACTTAGGTGCGTGGATTGAAAT # Left flank : TTGGACGAGTATCCTCCTTTTCTATGGAAGTAGGTGAAAGAGATCTTAGTATTAATTACATATGATGTGAGCACAACAAGTGGAGAAGGAAGAAAGAGATTGCGCAAAGTCTCGAAGACCTGTCAAAATTATGGGCAAAGAGTCCAAAATTCAGTGTTTGAATGTGTCGTAGATACAACACAATATACAACTTTAAAATTTGAACTAGCTAATATTATTGATGAAAATCAGGATAGTCTTCGCTTTTATCGGTTAGGAAATAATTATAAGACGAAAGTTGAACATATTGGAATCAAGGAATCAATTGATATAGAAGGACCATTGTTTTTTTAGTGCGAATGCCATGCGCACATGAATTCTTTGGAGGATTCGCACCTGTTTTTAATACTTTAGAGGTGCATTATTACATGTTTTGATTGAATTTTATTTAATTAATATTTTAATACAATGAGATTTCGACGAAATTAGTCTTTTTTAGGACTGTTTTCTAAAAAATCGCT # Right flank : TATTGGTCAACTTAAGTACACTAAACTTAAGTTAACCGTTGCACCTTATGTTAGTATAGTTCCTTGAACATCCTTGAGAGCAGTACTGTTATTAGTTTTCAAAGAGAACTTCTTTGTTTTTTAATATAGAATACGAGGAGAGATCATGATGGTATTACCACAGGAAAGCAATTCTTTATCGTATGCTCAATATATGGAATTAGAGGATGATATCCAATATGAGGTGATTGATGGACAAATTTATAATATGTCTCCTTCCCCAAATGTAAAACATCAAGCAATTGCGATGGAGCTTGCTACTGAATTTAATCTTTTTTTTAGAAACCAAAAATGTATGGTTCTTGGAGAAATGGATGTTTGTCTCTGTGGAAAAAGGGATGTAACGCAAGAAAATGAATGGGTCAAACCAGATATTATGATTGTATGTGATAAAACTAAGATACAAGAAAATTACATTTCAGGTGCTCCAGATTTAATTGTTGAAATCCTATCAAAGTCCA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTACTTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 54841-54088 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORE01000012.1 Bacillus sp. J14TS2 sequence012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 54840 32 100.0 32 ................................ ATCGGTTTTAGTATTGACAAGACGATTGTTGG 54776 32 100.0 33 ................................ TGAGAAAGATGTGAAACGTATTTCCGATTTTAA 54711 32 100.0 35 ................................ CTCCAACTTATCATAGACACGTATCTGTATTGAGC 54644 32 100.0 34 ................................ AAAACACGTGGGATGCAGAATCGGAAAAAGTGGC 54578 32 100.0 33 ................................ ATAAAGATCGAGAAATGGAGAAAGATCGATTTG 54513 32 100.0 34 ................................ AGTCATACCAATCTGTGATCCGGCACCAGCGAGA 54447 32 100.0 34 ................................ TTACATTATGATGGGGGTCATTATATGTATACAT 54381 32 100.0 34 ................................ ATGAGTTACCTTATTTGGGAGATCATCAACCATC 54315 32 100.0 33 ................................ ATCAGGCAATCCATGTCTGTTTTTTGCATCCCA 54250 32 100.0 34 ................................ TGTATGAGGAACCTTAATCACCTCGCTGTATGCC 54184 32 100.0 33 ................................ AAGGCGCTGTATCAAGACAGAGTACTAAGATCG 54119 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 12 32 100.0 34 GTCGCACTCTTCATGAGTGCGTGGATTGAAAT # Left flank : TTCTGCTGGAATTGGTGGAGCGCTAGTTGGCCTCTTTAATGTTAGAGGAACAGCTTACCTCCCTTCCTTTGTCGCTCCATTTGCATCTGATAATGTGGTAGGCTTTATCATTTCCATGCTCGTCACGTTTTCTTGTTCCTTACTAATTACCCTATTTGCGAATAAAGTGGTGCGGAGAAAGAAGCAGGAGATTGTAGACAATAATGGGATTGTTGAAGTAGAGTGAGAGTGTATTAGAATTGACTATTTTAATGAAAAGTTAAAGAGATTGGCTGTTGCCAATTGAAAAAGTCCGGGGAGATAAAAATATTCAAGTAAGGAATTCAATTTACAGTGCGAACCTCAAGTGCACATGAATATCCCGGGAGACTCGCACCAATTTTTTTCGCTTTTTTACTCTTTTTATCACTATTTATAAAGTTTTCTCTGAAACTTTATAAAATTAAGTGCATTTTGGGCAAAAAACTCATTTTAAGAGCTAAATTTTGCCTAAAATCGCC # Right flank : GTTAAGGATACAGTTTATTGATCCTGAAGATGCTTGCCGCACTCTTCATGGGTGTCATCTTCAGCACCTTGCCTCACAATAATATAAGTCTGTATTTCCTCGCAGGTATGAAAGTAAAAAAATATACGTCTCCTATATATCCGTAAATAGTCTTAAAATTGATCCTGAGAAAACTAGTATACTAGCTAGTTAGTACCTTAGGATTTATTTGTGTTTTCTTTATAATCGTTAGAGAATCGAAATATTACGTATTGTTAAGCAAAAAATTTCCAATTATTTGAAGGATTTTGTAGAAAAATACAGAAGTATAACTATAGAAGTAGTATAATATCCCTATATATTGAAGAGGTGAGGAAGTAAATGAGTTATATCGCACATATTCGGGAGTTTGATAAGCAAATACAAACTGTTGAAGAGCATCTATTAGGTGTGAAAAAATTAGCAGAAGATTATGGAGAAAAAATAGGTGTGAAACATCTTGCGGGACTTGCGGGGTTGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 61385-61020 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORE01000005.1 Bacillus sp. J14TS2 sequence005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 61384 32 100.0 35 ................................ TCTGACCAGTTTGTAATAATACGTTGGTTTTCCTC 61317 32 100.0 34 ................................ TACTGTCCTATCGGCGATTGTTGACGTCATTTTT 61251 32 100.0 34 ................................ AATTCAAGTAAAAAAGGGTAATAAAAATGATATC 61185 32 100.0 34 ................................ GAGTGGGAAAAGAGTTTTTTTCAATCCCACCCTT 61119 32 100.0 36 ................................ ATCTCGAAAGGTTGCCATCGCCCACATAACAAAGGA 61051 32 84.4 0 ............A........CAA...C.... | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 97.4 35 GTCGCACCTTACTTAGGTGCGTGGATTGAAAT # Left flank : TTTACACCTCCGCAATTGAGAATCACTTTCAATTACTAAGTTTATTGAAAATGATTCTCATTGTCAATGATTATTTAAACAACATATTTTTTTAATGACAACAATATGACGGTGGGCTCTAGAACATTATCGGGAGGATAAATAAAGCGGTTCATTAACTATTGCTTGATTTGGTATGATAAGATTAATCTGAAAATAAATGCAAATCTCCATTTCATATTTTTATTAGCGGAAGGAGCTTATTGTTGGGGCGCAGCAATGTGTGAGATCCAGCAGTATCTGAGTTATATAATCAGTGGTGCGAACCTGAAGCTCACATAAAAATCCTAGGAGATTCGCACCTTCCTACCTTAATTGGTTCGTACATTGATCTAGCGGGATTTACAACTACTTGATAGATACAGAGGAATTGGTTACACACATCAGAACTAATCTTATCTCAGAGACTCGCACTTTTGGGTGTGTAAACCATTGATGTACATGCTTGGAAAACGGTCGGA # Right flank : TTCGGTGGTGTACCCGTATTCATAAAACGCCCGTTGCCCTCCTCATGAGTGAGCAAATTGAACTTTACATATAGTTTACTAATTAGGGATGTATATATAATAATTCTCGTAGTATAGTGCGAGTACTATTATGACCATCATAAAAAATCATCTCTTGAATATAGTGGAAATAAAAGCACCTATTGGAAACATTGGATATTTCATTGCATCCCTTAAAGGAATAACCTAGTATATATAGTAGGTATGAAAAAATTGCTAGAAGTCAGAAATGCTAGAATGGTTTAAGTAATCTCTAAAATTTGGTTTTCAAAATGCTTGGAGATATAATTTGCAACTATACTAATGTAAGTAAATGGTTGTGAGACGAGTATGCTAAAATAGAAATATGGGGGTATATAAAAATGGAATTATATTTAATTCGACATGGAGAATCAGTTGGAAATGCGACAGGTAAAGATATTCCTGATTGTACCTTAACAGAACGTGGAGAAGAGCAAGCA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTACTTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 90139-89836 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORE01000005.1 Bacillus sp. J14TS2 sequence005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 90138 32 100.0 34 ................................ GTCTTAATGGCCGTTTTATTGTTGGCTGGGTGTA 90072 32 100.0 37 ................................ AATAATGTCTTCCAGTTGATCGACTCGGGATATTTGA 90003 32 100.0 35 ................................ ACGTTAATTTCAGTATTCTGTATTACTGCAAAAAA 89936 32 100.0 36 ................................ ATGATTTTCATATGTTGCTGGATTAGCTACACTGAC 89868 32 96.9 0 ....................A........... | G [89840] ========== ====== ====== ====== ================================ ===================================== ================== 5 32 99.4 36 GTCGCACTCTTCATGAGTGCGTGGATTGAAAT # Left flank : ACTCCTGAACAAGAAAAATACACAACTTTACCGGAGCCATCCAAAATTCCGTATCAAACCTTTTGTGGGACGTGAAGGAGAAAAAGCGCATATTCCAAGAAAAAATGGCTAAGACCGCCATATCCTGCTTCAGTTTCTGAATAAAAAAGTAGATAAAATAGTTCATTAACATTGAGCGATTTGATATGATGGATTTAATTTAAAAATAGAAGCAAGGGTTCATGAACTACACTGTTAAAAGTTTAAAATGTATTTTGAAAGAAGGATCGCAATCCATTTACTAGTATCTTTTTTATCATGGTGCGAACCTGAAGCGCACATAAAAAACCTAGTAGATCCGCACTTTCCAAATCATTAACTCATTCCTTGATCTAGCAGGGGAATTAGGCATTTGTCAGATATATGGAAAATGAACATATAAACAAAGTTGCTCTTGCATACGGAGGTTCGCACTTTCAACTGTGCAAAGTATTGATGCATCAGCTTGGAAAACGGACGCT # Right flank : AAATTAAAATGAAACTGGGGGAAATCCATCTAGATTTCCCCGAGCTCATCGATGAACGCTGGTCTTCTTATATAAAGAGCACGCAATTTATTTTTTAACTCTTCCTGTTTTTCGCCACCTGCCACTTTTTTATAGTCTTTCAGTTTATAACAAATCCTTCGATAGGCTTTTCGGTTGGATGCCATTTCCGCTTCCATTTCGATATATTGTGCGTACACTTCAATAACCTGTTCAGGAAATTTGCTGCTCAGTATATTTTTGTATTTCTCAATATTACTTGGGTGTTCCTTCACATAGTCCAAGATCGCTTCAAAATCATTCTCAGCTTCAATGAGTTGCTGATAGAGCAAGCTCATATGCCAGCCATTCATCTCTTTTATTTCCTTCTTTAATTCTAGGTAAAACTCGTTTGTCTCCTTTTTTGTTAAATCTTTTAATTCCCAGTAATATTCGAAATTTCCGTCCAATAATAATTCTTTTGCCAATTTTTCCTGCTCTTC # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //