Array 1 2739-913 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018449.1 Methylomusa anaerophila strain MMFC1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2738 30 100.0 36 .............................. GAACTGGCGTTAAGCCCGAAAAGTCCTCCCAATAAA 2672 30 100.0 36 .............................. CAGCCAGACAATCCCGGGCTATAGCCTGTACCAGGT 2606 30 100.0 35 .............................. TAATCTAACAGAGTATACTGTTCTCCATAAGAGAA 2541 30 100.0 36 .............................. TCTACCGGTAAAATCGGCATTGAAGCGAACCGGGTA 2475 30 100.0 38 .............................. CTTCAGATTGGTCATAATCGCCGGCCATGAGCGCGGCG 2407 30 100.0 38 .............................. CTAATACACTGTCTCTCATGTCTTCTAGCATCTGTAGT 2339 30 100.0 36 .............................. TCGACATGCTTTGATCTAGGCTTTTGCTAACTAGCA 2273 30 100.0 39 .............................. AAACATTCTCCAGGGTCATCCCACTCGGTTTTCATGCCC 2204 30 100.0 35 .............................. TCCCTGCCAGGCGCAATTTTGCAAGCAAAGCATTA 2139 30 100.0 38 .............................. TTGGAATTGCAGTCGAGGGCCATAAAAAATCAAAACGG 2071 30 100.0 35 .............................. ATAAAAAATCCCGGTACTGCATCCATGTTTCATAA 2006 30 100.0 38 .............................. ATACAACCTCGTTCCCGACGAACACTGTTGCCTACGCT 1938 30 100.0 35 .............................. AATCGCGAACAAAATACAAGAGCCGGCTATGTTTA 1873 30 100.0 38 .............................. TTGGCTCTGCAAGCAACTGTATAAGTTCGATAGCATTG 1805 30 100.0 37 .............................. TATTTAATTAATTTTTTCACGGCATCGTCAATAGACT 1738 30 100.0 38 .............................. CAGTGTATCGTAAAACGCATCAAATTCAAACCGGTTTT 1670 30 100.0 36 .............................. CTCTTTTCATTAAGTGCTGTCCGAATCAACCGATAT 1604 30 100.0 37 .............................. GAACAAATGGGCAGTGAAGTTTATATGAGCACTCTTA 1537 30 100.0 36 .............................. CTCGGCTGGGCTTCAACAGTTAATTCAACGCCTGCG 1471 30 100.0 38 .............................. CCGTACAAAACCTCCATTTGTTGTTGAAGTTGAAGCTG 1403 30 100.0 36 .............................. GCGGGAATTTCTGGAGATAATCTAATGCTTTCTTTT 1337 30 100.0 35 .............................. TTTATTAGTTCAGCGGATCTCGGCTATCGCCCGGA 1272 30 100.0 37 .............................. GCCCCTTCGGCCCAACGCCGATATGCTTCAGTTCATG 1205 30 100.0 36 .............................. AATTGTTTCGCTATATTTTTCCACACCGGGCATGTT 1139 30 100.0 36 .............................. GGCTTAGCTGCTCCCACACATCGCGATGAATTATGA 1073 30 100.0 35 .............................. ACATGTCTGCCGCTTGATCAATTGTCATTTCTTCC 1008 30 100.0 36 .............................. CAACAATGATATAATTTTTCTTGTACCATATTCATT 942 30 90.0 0 .....................A......CA | ========== ====== ====== ====== ============================== ======================================= ================== 28 30 99.6 37 GTTTGTAGCTTACCTATAAGGGATTGAAAC # Left flank : AGCTGCATTGGGTGTTGGACAACGTACTGCGAGAAGACAAAAGCTGCGCACGAAAGGGGCAGAGTGCAGAAAATCTCGATACCTTAGGCATTAAATCTGGTGAAACAAGATACCTCGCTGAAAGAAAGCCAGCGGGCAAAGATAAAGATGTGCTCTTTGGACTACCGCTATCTCCTTCAGATTCTTCAAATTTTTCCAGTCGCACAAAATCCGTAAACGATTGCCCTGAACCTGAAACGAGGAATCTGTCCTCTGTTTTCTATATAAAGCTGCTCTTAGTCAGGAAGATGTCGTCGACCATAGATAATGCAAAAAAGCCGGGAGGTCGACGACAAATAGTCTGGGTACCCGGAGACAGATAGTTGTTGACTTTTTGGGAAATTTCCGTAGACAACAGAGTTAGAATAGTGCGTGAAATGACACGAACAGTAATTCTTTTATTTATCTAAGAATGCATGAAATATAAGGCTTTCTTTGGGGTGCTGTTTTGTGTATAATGG # Right flank : TATTTCGTCTCCAAGGAGAGCCTACGCGGGGCAGGTATGGGGGGACGCTGTCAAAAAAAACACAGCCCAAATCTTTGGGCTGTGTTTTCTATATTAAGGGAAAATGAACAATATATGCAGGAATTTGAAATAAAATGTCGAATTTCCATATAAAAAGAAAGATTGTCGCAACTAATGCAAATGATGCTGAGTAGCTACTGTTTAACTTAAGGTAGCGGTGTCTATTGGAGGTACGGTACGTAGCAGTTGTTAGAACTGCGAGATTGATCTTTCGTTCCAACTGATATCCTCTTTTGGTCGCATAAAACAACGTTCCCAGAAGTTCGGTGGCGATAACGGGTTTTGCACAAGGGCAGTGCATCGAAATTTGGATAAAGAAGCGGAGATTACTTGTCAAGCATCGATGATTTCTAAGATACCATATTTGTAGAAGGGACTATAAACATTTCTAAAAAATCTTTTGAAGGAGATCGCATGGACAAGAATAGAAATCAGGAGGA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCTTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 25404-24034 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018449.1 Methylomusa anaerophila strain MMFC1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 25403 30 100.0 39 .............................. CCTTCTATTTTCGGGAGGTTCTCTTAGCGGTGACCAATC 25334 30 100.0 37 .............................. AAAAAATATTTGTATTTTATCCAGCAAAATATCCCCT 25267 30 100.0 38 .............................. TGGAGCTTGTGGAGGGCGTAATACGCTACATTGGCGTA 25199 30 100.0 36 .............................. TGATTTTCGACCTATTTTTATATAGTTCGACAAATT 25133 30 100.0 38 .............................. TCCTGACTTGTTCCGGAAGTTTACGGAGAAGTGCCCGG 25065 30 100.0 38 .............................. ATCCAAGAACATGGTTCGGATGTTGCAAGGCAATGGAT 24997 30 100.0 37 .............................. TATTCGTCGGTATCTTCGTATAGTGGAGCTACTTCGT 24930 30 100.0 36 .............................. AACCACTCCATAACTTCTGCCCATATTTGGCCCGCT 24864 30 100.0 36 .............................. CCGAGTTGCAGACCGCCAATACTGCAAAGGATAAGG 24798 30 100.0 37 .............................. TTGATCTTCAACTGCATCTTAGGCGGGGGAACTGGTA 24731 30 100.0 37 .............................. ACTCTTCTTCTATTTCAAGGGCTTCTTCCGATGGGCA 24664 30 100.0 35 .............................. TAGATGATATCGCCTATGAATGGGAATGTCGTACC 24599 30 100.0 35 .............................. ACTTGAACCGCTAATATTCTAGTGTTTATGCGGGT 24534 30 100.0 38 .............................. TTTTTAAAGAGGCATTTTCTTGTCGAAGCTTCTCTACG 24466 30 100.0 38 .............................. CCGCCTACCGGGACAAGTACTTTGTTCCCGGAGAGCGC 24398 30 100.0 38 .............................. AGCCTACCGTAAAAGTCGAATCAACTTCTCAAGAACCA 24330 30 100.0 35 .............................. CTCGGTACACTCGGTACATCGGTACACTATATATA 24265 30 100.0 37 .............................. AAAATAAAGAAGTCATAATGGACAAAAAAATGCAGCA 24198 30 100.0 36 .............................. TAAGTTAGCAAGCCACTTATCACGCTCTGCACGGCA 24132 30 100.0 39 .............................. GTAGGAATTTCGATATAAATATCGGCAGATTGGTCTTCG 24063 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 21 30 100.0 37 GTTTGTAGCTTACCTATAAGGAATTGAAAC # Left flank : ATGGCAGGTGATATTGTGTATGTTATTCTTGTCTATGATGGGAATGAAAAACGGGTAGGCAAGGTTTTGAAAAAATGCCGGTAATATTTGAACTGGGTGCAAAATTCAGTTTTAGAGGGAGAGATTTCGGACGCGAACTATACTAAGCTGACTATGGAACTGAACAAAATTATTGAGAACGAAGAGGATTCGGTGATTATTTACAATCTGCGGACGACCAAGTATTCAACGAGGCAATTTCTCGGGCACGAGCGGGCCAGTACGAGTACTATTATTTGAATCCGAAATTTGTCGTCGACCATAGATAGTGCAAAAAAGCCGGGAGATCGACGACAAACAGCCTGGGTGTCTGTGAGCAGGTAATTGCTGGCTTTGAGGAAGTTTCCCCAAGACACCAGGCTATAATGGTGTGTGAAATGGAACGAGTGGTATTTTGTATTTTCCATTTAAGATGCCTGAAATATAAGGCTTTCTTATTGTTACTTTTTTTTGTATAATGG # Right flank : GCATCAGTTGGACAAGGTTTTCTTTCGTGACTCTGCTTTCTAGCTTACCTATGCTGGACTTATAGATGGGCGCCCACAGGTAGTGTTGAAAGCGAAGATCCAGAAATTACAGAGCTATATAAAAATTAAAAAGCCTCTCGCAAGATAAACGAAAGGCTTTACTTCGATTATTGATTGACTTGTGATCTACGACGTTTACGATTAACGTAAAACCGAAGGGCTTTAATTTCTAATTCTTCAGCTTTATATTCGAAAAGACGCCGGGAGAAAAACTGTCTTCAATGCCAAGCTCAATTTTACACGGTGGAATATCTGGAAACCGGCATTGAACAGGAACGGCAAACGGCGAAAAATGAAATTGCGAAACTAACCAGGGATAAAAATAGACTTGAATCTGAAATAGCTCGAATTGGGGAAACTGTGAAAGCGTTTTTTGCACTTGCAAAGATAAAGATATGATGCATTTACATCCCGGGCCTGGACGCCGGCGACGGAAACGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 3 3002509-3002938 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018449.1 Methylomusa anaerophila strain MMFC1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3002509 30 100.0 38 .............................. CTTTCACAGCGGAACCAAAGGGAAACACGCCTTGCTGG 3002577 30 100.0 37 .............................. TCGATTTCGCCTTCCTGGTCTTCAATAATTTGCTTGG 3002644 30 100.0 35 .............................. TCACCTACTGTTTGACCAATTTCCGTAGGCGACGC 3002709 30 100.0 38 .............................. GACAATTCTATAGGTGCCCAGCAAGATATTCTTGGTCA 3002777 30 100.0 36 .............................. TCGGTTTCTTGAAGCATGCTCCGTGCCAGCCGATAA 3002843 30 100.0 36 .............................. AAATTAGCCCGAAGGCTGTATTTAAGCACATTCCCT 3002909 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 100.0 37 GTTGTGAAAGCCGCTAAGCGGCATTGAAAC # Left flank : AAGACCGGCATTGACAGAGTAGAGACGGAACTCAAAACCGACATTAACAGAGTAAAGACAGAACTTAAAGCCGACATTGCTGCGCTGGATGCCAAAATGGAAAAAGGCTTTGCCGATATAGTCGGTATGGTCAACTTGCTGGGCGAAAAGACCGAAGCTGTGCTGCGTATTGAGACTAAACTCAGTATACTGGCGGAACAGTCTTTGGATCATGAAACTGACATCCGGCTATTGAAGAAAGCCCGGTAATTTTCTCCTTTAAATCCGTCCCCAATATTTAGCTTTTGTCGTCGACCCATAATAGCGTAAAAAAGCCGGGAGGTCGACGACAAGCAAAAAATTGCTTTGGAATTAGGTGTTATTTAGGTTTACTGGTATTTGAATGATTTAGGTTTATTCTTATGAACTGGATAAGTTGATCTGCAGTCAAATTAATTTATCATACGTTTAAGCCTTGTTACTGCTGATGTTGTGAGGAGTTTTTGTTGTGTAATAAATGG # Right flank : CTTTGTAAGACAGATGATAATCTCTGTCTTCATAGGGGTTGTGAAAGCCGCGCTTTGTTGAAATTGAACGATTGGGAAAACACATTGCCAGCCAGACAGGAAGTCAGTTAGGTGATGGAAGCTGAAGGACCTCTGTCTTTGGACTGCTTTGCAATTATATTTTTTGCTACACCTTGAGAACAAAAGGACTTGGAACATTTGCTTTTCAAATGTGTAGTTGTTACGTTAATATCAATATAGAAATTAAAATTGCGTTAATAATTGTCAAACAATTTGAACTCGCATTTCACTATTGAGATCAGCGCAGAATAGAAATGCCCACTGAACCTTATACGGAAGGATTTTGTGGCAAAGCAAATGGGATATTGTAAAAGCATAATAAAGGAAGCCTTCTTCTGAGAAGCAAGGCTCGCAATAAATGATATATTGTTTTTAAGATTGTTTGCATGGCTGATCATGTGGGCGTGGAGTGTCATCAGCGGTTGTGGCGTGAAGACGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAAAGCCGCTAAGCGGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.60,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : NA // Array 4 3015750-3016510 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018449.1 Methylomusa anaerophila strain MMFC1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3015750 30 100.0 36 .............................. ACAACCGCTATTGGGGTCACGAGAACGAGGCCCCAT 3015816 30 100.0 36 .............................. GATATATTGATCAGTACGAAAAACTCAAAGGTGAAA 3015882 30 100.0 35 .............................. TGGGGACTTCCTGACCGCATCGTTATCCCGGAAGG 3015947 30 100.0 37 .............................. ATAATATACTGCTGCAGCATGGTATCCGTAAGAATAA 3016014 30 100.0 37 .............................. TGAATGATATCCGGGAGTTTAAACATGTTTCAACTAC 3016081 30 100.0 38 .............................. AAAAAAGTCATAAAACGACATCCATCCTGCATCGCTCC 3016149 30 100.0 35 .............................. TCTTTCCCCCTCCCTATATCGCAACCCCTCTCTTA 3016214 30 100.0 35 .............................. CGGCCTGCATAAAGAAATTGGTGAGGCTATGGTCT 3016279 30 100.0 37 .............................. CGGGAGGCGCATAATATTTGTAAGGCGCAAGTTTTTT 3016346 30 96.7 38 ..C........................... TCAATCTGACCCCATATTCCACAAGGCAGTCGAATCCT 3016414 30 100.0 37 .............................. CCCGATCGAGAGCGAGCAAGGCGGCATTTCTATGTCG 3016481 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 99.7 37 GTTGTGAAAGCTGCTATGCAGCATTGAAAC # Left flank : TAATCGCTTTTGATCGGATCTGTCAGGTTGTGAATCGCCTCACCATCTAAGGGATAAAGATCAGCTAATTAAAGTCAAGAGCTAATCATAAATGTTTATAGCAAGCAGACACTGCCAGACCGCGAATATTATTCGGGAAAGCATATGCTAATATTCAAGTTTTCGTCCATCTCGTTTGGATTTCACTGGAAAGCAGGAATCTGCATATTTGCGGCGAATAAAAAATTTTGTGGACCGTTTGTCGCAAATTGTTAGAATACGGCTTAAGAACATTATTTATTTTTTTGCCGTCGACCCATAATAGCGTAAAAAAGCCGGGAGGTCGACGACAAACTAAAAATCGCTTTGGACTTAGACATTATTTAGGTTTAGCTGTACTTGAATGATTTAGATTTATTCCAATGAACTGGCTAAGATTAATCTGTGGCCATGTTAACTTACCATCGTTCACGCCTTATTATTATTGATATTGTGAGGAATTCTTATTGTGTAATAAATGG # Right flank : CGCTACAGACTGTTTTTTACTGCACACCCATATTTTTTATTGTGAAAGCTGTTTAGCTCCCTGAGACAGAGCAACAACCCACCAATCCAGGCTTAGCCTAGTTTAGTTGGGTTGTTGTTTTTCTGTAGGGGTGAACAACTGTTTTATAAGTATAAATTTGCATGAAATTAAGCGAGCGGGCTAAACGTCACAGACCGAAATTATTAAAGCTTCTGCAAGATATCGATATAATTGCCGGTTGGAAGATTGGTAGTTAGTCATGGCTCATAGAAACAGGAATTTCTTAATGAGATATTTGTCTATAAAGAAAGGAACGGGATAAGAATTAGAAATTGATTAAGTCAGTTAGTGAGAAAAGTGAACTCGTTTAACTTCGGGAGGAATAACATGAGTTGTCTTAACAATGTAACATGCGAACGACGGACTTATACCGAAAAGCCTCATGGGCACATTCATGCTTTCGCCCAGTTGGTTGTGCCGATCAGCGGCACCCTTTCCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAAAGCTGCTATGCAGCATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 5 4694803-4694573 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018449.1 Methylomusa anaerophila strain MMFC1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4694802 30 100.0 36 .............................. GTAAACAGCGCATTCAAGGCTGTACCGGCTGTTTCG 4694736 30 100.0 37 .............................. TTGTTTTTGGCCCGTGGCCGTCACTCTGCGTATCTAT 4694669 30 100.0 37 .............................. CTCCTAAGTGAGGCTTCGATTGGTTTTTCATCCTGCG 4694602 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 100.0 37 GTTTATAGCCTACCTATAAGGATTTGAAAC # Left flank : GTGATTTTGCATCGCTGATTGAGCGGCCGGAGCAGGAGATTGATCAGGCGGAGTGGTATCAATATATTGATACCTTTATCGTGACAATGGGCGGGGAAGCGTATTTTGATGCCGTCCATTTTCTTCAATATGGACAAAGTAAACAGAAATTCTTAAGTATACCTAAGCGATGGGATAAGTTTTCTGACGAAACGGAAGGCGGGGCTATCTTAAGCATTGGCGCCTGCAAAAGAAAATATAAGGGCCAAGGGTAACCAGTGGGATAAAAAAAGTAGAGTATCCATTGTTCTCCGGAAAGCAAAGATTGTCTTTATTCTATTTGTCGTCGACCTCCAGTAGTGTAAAGATACCAGGAGGTCGACGACAAATAGGCCATTAGTCCTAAAACAGTATTGATGAGCATTTTTCAGGTATTTGATCGATCATACATACCGTAGTGTATCGTACGATACTACTAGTAAAAAACGGACGGTATCCTGATTTTACTGGCATTGAAATGG # Right flank : CGGATCCAAAGAGTATGGATTCAAGGAGCAAATTCTTAGTTTATAGCCTAGCTTGGGTTGAAATGGTTTATTATTTTTATCAAAATTTTCAAAGGAGCAGTCCATTGCATCGTATCTTTTCATCATTTCACACACACCCATTTATTTTATCACCTTGGGTGTGTGCTTTTATTATAGTAGTCCAGAATAATACCAAAAATAAATTAGCAGGTATACTTAGCAAAATCGCGAATCCCTTTTCTGGTCAAAACCGGCTAACTAAGGAGCGCTAAATGGAGAAAATTCATGGATAGACATATAGTTTCTTATCGGCATATTGTGCAGATTGCTTATCCCGTTACACTTTCTATGCTATCAATGAATGCGATGATATTTGTTGACCGAATGTTTGTGTCGCAATATAATCTTACGCAGTTTGCGGCCATGATTCCCGCCGGTTTGTTTGCCACCTCAATAGCAAGTATTTTTGGAGGAATTGTTGGTTACTCTTCGGTGCTAGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGCCTACCTATAAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 6 4710577-4709020 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018449.1 Methylomusa anaerophila strain MMFC1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4710576 30 100.0 38 .............................. TTGCCGGAACGTTTTTGACTTTGGGTATGTTGTCAACC 4710508 30 100.0 36 .............................. TAATCAACCGGTCCGGATAGTACAAGTTCATTCAAA 4710442 30 100.0 36 .............................. TGCATCGAAGATTTAGAATTCCTTGCAAGAGAAAAG 4710376 30 100.0 37 .............................. GCTTGCGGTGTTTCATGGCTGCAATTATTTCGGCTTG 4710309 30 100.0 35 .............................. TTCCAAAAGCCTGCAATGGATTGTCCGGCTCTGGA 4710244 30 100.0 36 .............................. AGAAACGGATACTTCGGCCTGATCCGATTCCCAACA 4710178 30 100.0 36 .............................. TCCTCATTGAAAGCAAGACGGCGCGTCAAGAGTACA 4710112 30 100.0 35 .............................. CTATTTGGCGTGGAAGCGGTGGTGAGGAGAATATC 4710047 30 100.0 37 .............................. TCCCTCCGACATCCACAATTCCGGAAGAAACGGATGT 4709980 30 100.0 37 .............................. GGGGAAATCGGCGGTGTAGCCAGTGGTGAAATTGCCG 4709913 30 100.0 36 .............................. GTGAAATCATGTGGGCCATTGTGGACGGCAGCGCCG 4709847 30 100.0 36 .............................. AAGTTTCTCTGAGACAAGATCCGGATCTCTTTCTTT 4709781 30 100.0 38 .............................. GCCGTCATGACTTCGCCAGTGTCTACGCAGGAAGAAAA 4709713 30 100.0 37 .............................. TCCGGGAGCGGATTCAAAAAACAAAGTACGTCAAAAG 4709646 30 100.0 36 .............................. TTTGAAATGCCGGTATTCTTCGATATGGAGGACGCG 4709580 30 100.0 37 .............................. CGTGCCAGGTCAGCAGACGCGGCGATGGGACTCCCGT 4709513 30 100.0 36 .............................. TCCTGATAGGTGTCTTCTTTTTTCTTTCCGGCAGTC 4709447 30 100.0 36 .............................. CCGGTAAGGATGGTGGACCAATCGAAACCCTGAACA 4709381 30 100.0 36 .............................. TCATATCGCCGTCTGAGTTCCCGTAAACACTGGACT 4709315 30 100.0 37 .............................. AGCGGTATCCAAATAAGGAATACCTCCAATATGTCTG 4709248 30 100.0 35 .............................. TTTGCATTTGCAGTTTCAAGTTTGCTACATTCTTC 4709183 30 96.7 37 ........T..................... GACATTGGTTGTAAACTGTTTAGAATGCAGTACTCTT 4709116 30 100.0 37 .............................. AATTTCGATGGGAAAGGAAGTCCCCCGGTTTATGTCA 4709049 30 80.0 0 ........................CATGTG | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 99.0 36 GTTTATAGCTTACCTATAAGGGATTGAAAC # Left flank : GTGTGATTTTGCATCGCTGATTGAGCAGCCGGAGCAGGAGATTGATCAGGCGGAGTGGTATCAATATATTGATACCTTTATTGTGACAATGGGCGGGGAAGCGTATTTTGATGCCGTCCATTTTCTTCAATATGGACAAAGTAAACAGAAATTTTTAAGTATACCTAAGCGATGGGATAAGCTTTCTGACGAAACGGAAGGCGGGGCTATCTTAAGCATTGGCGCCTGCAAAGAAGATATAAGGGCCAAGGGTAACCAGTGGGATAAAAAAAGTAGAGTATCCATTGTTCTCCGGAAAGCAAAGATTGTCTTTATTCTATTTGTCGTCGACCTCCAGTAGTGTAAAAATACCGGGAGGTCGACGACAAATAGGCCATTGGTCCCAAAACAGTATGATGAGCATTTTCAGGTATTCGATCGATCATACATACCGAGTTGTATCGTACGATACTACTAGTGAAAAAACGGACGGTATCCTGATTTTACTGGCATTGAAATGG # Right flank : ATGACAGAGACATTCAACCAGACCGCGACGGAATATTTCTCGCTATCACGACCCTCATTGCTGAACCAGATCTGGTGAAAAGTTAGCAGGGCATAGGGCATATATCCCAATGGATGATGTTATTATAAAGGAGATAATAATAACTTAGATTCTGGGCTAAGGGCTGAAGGGATGGGTATGCTATGGCAAATAAAAAAAGCGGGCAAACCGCCTTTAATGTAGCAGCAATCCGGTTGATTGAACAGTACCAACCTAAAGATTTAAGACTCTTTACCGATCCTGTAATTAAAAATCTCTTTAATTGGCCTAATCGGTTCCTGCTGGGGTTCAAAATAATTAGAGATTGGCTAATAAGATTTAGTGACAAGCAAACCAAGGGTATTTATGGTTCAAATATTTGTCGAACCAGATATATTGACGATTCGCTTCAATCAGCTATCGAAAATGGGATCGAACAAGTTGTAATATTGGGTGCCGGCCTGGATACCCGGCCGTATAGG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATAGCTTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 7 4754561-4751795 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018449.1 Methylomusa anaerophila strain MMFC1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4754560 30 100.0 37 .............................. CCTGGTCTTGTCGTGGAAAAATTCCAGTCTTGTCCAC 4754493 30 100.0 36 .............................. CCCCGTTGTAGCAAGGCCCTTTGTTCGGATCACCGA 4754427 30 100.0 35 .............................. CCGAGAACAAGGCAATTAAACCGGAACAGCTTTTA 4754362 30 100.0 37 .............................. CCATCAGCCGCCACGTCGTGCACGGAGCGGTCCGTCA 4754295 30 100.0 35 .............................. AAATTGACACTCCCTAACCTCCTTCCGGGTTCAAT 4754230 30 100.0 35 .............................. TTGCCAGCAGGATCTCCATAGTCCGTGAATTGATA 4754165 30 100.0 39 .............................. TCGTTTGATATCCCAACATATGAATTCTCTTAATGCTTT 4754096 30 100.0 37 .............................. ATAGTAGTGCGGCAATATCGCTAAATGGAATTGATAG 4754029 30 100.0 36 .............................. CTCATGCCCCTGCGTGTTAGTTCGGCAGTCAGGGCT 4753963 30 100.0 38 .............................. ACACAAGATCAAATAAATGAAATCATAGAAAGCCATGG 4753895 30 100.0 36 .............................. TTCTCCTTGTACTCCTTGGAGTGGCGCGAAATAATG 4753829 30 100.0 37 .............................. TACTTCCCATGTCCGGGATGTAGAGATAGTTTTTATG 4753762 30 100.0 37 .............................. TTAGTTCCTATAAACAGGATGACGCTAAGGAAAAAAT 4753695 30 100.0 36 .............................. TTGTTCAAAAGGGAGCGATAGCAATAAGACAATTCG 4753629 30 100.0 39 .............................. CCTGGTACGATTGATATATACTTTGTCTTTGTTTTTTCG 4753560 30 100.0 35 .............................. ATGGTATGGCGGACCGGTCAGGTGTACCGCAATCA 4753495 30 100.0 38 .............................. CTCTGCCGCTATCAATCCACCAATAGGCACGCGATTCC 4753427 30 100.0 38 .............................. GATGTTTTAATGTGGTTGGCTCTTGATCCAGGATCACT 4753359 30 100.0 36 .............................. TCCTAAAATCCGCAGAACAACAACCGCAACGATTAT 4753293 30 100.0 37 .............................. TAAGTGGTAATTGCCACGCCCGTATTGACGATCTGTA 4753226 30 100.0 39 .............................. AGTCGCTGTTCATACCACCGACCAAGCTACAGGCCGTCA 4753157 30 100.0 35 .............................. GCCCCTGGTCAGTGCTTTTCCAAAGATAGGCGCAG 4753092 30 100.0 38 .............................. TCATGATGCAAAAATTGGCGCCGGTAAAAATTCGGGCG 4753024 30 100.0 36 .............................. ATCGATATGACTGATATTCCGGTTGATATTGCCAAA 4752958 30 100.0 35 .............................. ACTAAATTCCGTGCCATATCGGCAATCACGTCAAC 4752893 30 100.0 38 .............................. TGAGGAAATCTAATTGTGTCAGGGGAATGATATTTCCC 4752825 30 100.0 37 .............................. CGAAAATAAGAAATATTACCTGGTCCAACATACACAT 4752758 30 100.0 37 .............................. TTGTAATAACAAAAAAGCCTGAGGAGCAAGGCCCTCA 4752691 30 100.0 38 .............................. TGGGAGATATTTAAATGGTTTGGCCGGGGGGTAGCTAC 4752623 30 100.0 38 .............................. TCCCAGTCTAGGGAATCCTCTTCAGCGCACCATTGCAG 4752555 30 100.0 36 .............................. TACCGTTCTAATTGCTCCTACGGTAGCTTACTTATC 4752489 30 100.0 36 .............................. TAGGATATCAAAACACGCTCACTCTGGAGGCGCAAG 4752423 30 100.0 37 .............................. ATAGAAGGAAATATGTCCGAGACGCAGGCTGCAAAAC 4752356 30 100.0 37 .............................. ATTTACCTTCTTGTCTATAGCGCCAACGGATATTATT 4752289 30 100.0 37 .............................. ACTCTATCGGGGTGTATGCGGCCGGAACACCTTCACA 4752222 30 100.0 37 .............................. ATAGAGCCGTTGACCAGATGGATATAAGTGCAGCCAA 4752155 30 100.0 35 .............................. ACAGTAATAGCGATAGCTCTCGCTCCAAGAGTCTT 4752090 30 100.0 36 .............................. ATTCCAGTCGTACCATCTGGCTTTGTTCCAAGTTCA 4752024 30 100.0 37 .............................. TATTTAATCAATTTTGCCACGGCATCGTCAATAGACT 4751957 30 100.0 36 .............................. CGTTTGTAACGGCAAAAACAAATATCGCGGACCTAT 4751891 30 100.0 37 .............................. CGGCTTCTGAGGTTTATAGGAATCCCCTGCGTTGCTG 4751824 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 42 30 100.0 37 GTTTGTAGCTTACCTATAAGGGATTGAAAC # Left flank : TGGCAGGTGATATTGTGTATGTTATTCTTGTCTATGATGTGAATGAAAAACGGGTAGGCAAGGTTTTGAAAAAATGCCGGCAATATTTGAACTGGGTGCAAAATTCAGTTTTAGAGGGAGAGATTTCGGACGCGAACTATACTAAGCTGACCATGGAACTGAACAAAATTATTAATAACGAAGAGGATTCGGTGATTATTTATAATCTGCGGACGACCAAGTATTCAACAAGGCAAATTCTCGGGCACGAACGGGCCAGTACCAGTACTATTATTTGAACCCGAAATTTGTCGTCGACCATAGATAGTGCAAAAAAGCCGGGAGATCGACGACAAACAGCCTGGGTGTCTGTGAGCAGGTAATTGCTGGCTTTGAGGAAGTTTCCACACAACACCAAGCTATAATGTTGCGTGAAACGGAACGAGTGACATTTTTATATTTTCCATCTAAGATGCCTGAAATATAAGGCTTTCTTATTGTTACTTTTTTTTGTATAATGG # Right flank : AGGTATAATAAAAGTGAAGATTAGTTAGCGCCTAATCGTTTGTAGCCTATAAGTATGGGTGGAGGAACTGAGTACAAATTATTTTGGAGTGAATGCCAATTGAAGGGAAAGACTATCTTGGCCGTTAGTTTTGGGACAACATATCCGGAGACGTTAAAGCTTACTATTGAAAGCGTGGAGAGTAAAATTAAGCAAAGTTTCCCTGAATTTGAGGTGCGGCGGGCTTTCACATCCCGCATGGTGATTAAACGTATTTTTGAGCGGGATGGTATTAGAATTGATACTGAGATAGAGGCTTTGGAGCGCCTTCGAATTGAAGGGTACCAGGAGTATACATTCAGCCGCTTCATATTGTTGCCGGTGAAGAATATGAAAAGATTGAAAGAGTAGTTTCTCAATATTCTTCTGTTAAAGCATTTCGCCGGCTTGCTTTGGGGCGTCCCATCCTTTTTTACGGTGGGGAGGAAGGTAAGCCTGACGACTATTTAATTGCAATTAAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCTTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 8 4758870-4757577 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018449.1 Methylomusa anaerophila strain MMFC1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4758869 30 100.0 37 .............................. CCTTTGGGGTCTTTGTGCAGATATTGCAACCCTTCGG 4758802 30 100.0 35 .............................. ATCGTTCTAAGCTGATACTTGGCGATGACGGCAAG 4758737 30 100.0 34 .............................. CATAGTCACATTCGCCGGCGGAAAACCGCCACCC 4758673 30 100.0 36 .............................. CCATAATCGGTATGCTGCTAGCCAATTGTCTGAAGA 4758607 30 100.0 37 .............................. TTGCCGATCAACTGCAGGCCTGGAGTAAAGACGTAAA 4758540 30 100.0 37 .............................. TTCACCAATATATCACCTCATGACTTTACTATACGCA 4758473 30 100.0 38 .............................. CAGAATATGGATATTTGTGACGGACAAGTTGTCGGTCA 4758405 30 100.0 38 .............................. CTGATCACCGGATATCCATGCTCGCGTATCACTTGGGC 4758337 30 100.0 36 .............................. CCTGCAGGCGGTCACGAAACTCCAGATAGCGGTGGA 4758271 30 100.0 36 .............................. GGGTTTATAATGGGGTGTTAACTGATACTGAAGTAG 4758205 30 100.0 38 .............................. AATCATATGACGGGTGAAAACCTATATACTCACCAGCT 4758137 30 100.0 36 .............................. TAGCTTGGGATCATTTTGGTTGTCAATATTTTTTTT 4758071 30 100.0 37 .............................. ATAAAAGAACAGGGAGAGATGAAAATGACAAGAGCAC 4758004 30 100.0 39 .............................. CGATGACAGCACCCGGCCGCCAGGCTTGGAACGAGCTTG 4757935 30 100.0 36 .............................. CAAATCCTGGGAACATCCCTACCAACACGAAGGATT 4757869 30 100.0 37 .............................. CAGCGTGTTGAGCCTGAAACATGGCTGCAGGGGATTG 4757802 30 100.0 35 .............................. CCCGGACCGTATGAGTGGTTTCGTTAACACTGACC 4757737 30 100.0 36 .............................. CTGGTTCCGGTTACCCGGTTGTTGTCGATTATGTAA 4757671 30 100.0 35 .............................. AATGTTTTGCCCCAGGTATAATAAGGGATAGTAAA 4757606 30 90.0 0 ........GT...T................ | ========== ====== ====== ====== ============================== ======================================= ================== 20 30 99.5 37 GTTTGTAGCCTACCTATAAGGGATTGAAAC # Left flank : CCACAGATGTGGTGAGATGATGAGTTATAGAGTCCGCACCCGTTTTTTACAACACTAAGTCCGAAAAACCGGCAGGGTGATAATACTTCACTATTTCAACCATTATGGCTATTATATGGGCAGTTTTTTTATCCGCACGAGCAACTGTCAGTTCCAGTGCTAATGGCCGTTGAAGGCAACATCCGTGAGCACTATTACCGGGCTTTCGATGAAATTATCGATGACGATGATTTTTGTTTCGAGGAACGAACACGGCAGCCGCTGAAAAACTATTTGAACACCCAGAACTTGTCGTCGACCATAGATAGTGCAAAAAAGCCGGGAGATCGACGACAAACAGCCTGGGGGTCTGTGAGCAGGTAATTGCTGGCTTTTGAGGAAGTTTCCACAATACCCAAGCTATAATGCTGCGCGAAATGGAGCGGGTGGCATTTTTATATTTTCCATCTAAGATGCCCGAAATATAAGGCTTTTTTATTATTGCTTTTTTGGTATAATGG # Right flank : GCCTAATAAAGCCCATGGTTAGACATTAAGCTTCGACCAAGCAATAACAAAAGAATTGTAACGGAGCACCAGGAAATATATAGCTCCAAACCAAAATTTGGGAGTTGGATAAATGTGCAAGAGAAACTGGAAAGTGTTTTTGACTATTTTCGCACGCATGAAAGAGTTAGGGTTGTTTGGCTGTTTGGCTCTTTTGCCCAAGGGACGGCCCGTAAAGATAGTGACATAGATTTTGCCGTTTTGTTTGAACAAAGTCTTTCGCCTGAAGAACGTTTTTCTTTGCGATTGGAACTAATGGACAAAATTGAGGGCTTGACCAATATTCGGGCTGACGTAATAGACATGGAGTCCGCACCTGTCTTTCTACAACACCAAGTCCGAAAAACCGGCAGGGTGGTTGTAGAAAAGGATAGAGAAAGAAGGATTGTATTTGATGTACGGTCAAGGCGTGAGTATTTTGATTTTCAGCCGGTATTGGCGCGGCGGTCGGCGGCATTGCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 9 4771017-4769382 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018449.1 Methylomusa anaerophila strain MMFC1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 4771016 30 100.0 36 .............................. TTATTTTCACATACTCTTTTAGATCGGCCAAAAAAC 4770950 30 100.0 35 .............................. TTGACTGCGTGTTGTGAGCGACCGGAGGCGTAAAT 4770885 30 100.0 37 .............................. GGGCTCTCCGTAGCACGCAAGCCGATTAAAAAAGCAG 4770818 30 100.0 37 .............................. GATAATGGAGATTCAAAAGCGTTGATGCCCCATCTCA 4770751 30 100.0 35 .............................. CTGGCAATGGGCTTCACCGGCAAGAAAGCTCTCCA 4770686 30 100.0 36 .............................. TAAGGTATCAAAACTAAAACGCCTTCTTTAACCAAG 4770620 30 100.0 36 .............................. AAATAAGCTGTCGGCATTGCTGCCTGGCCACGTATG 4770554 30 100.0 36 .............................. ATAAATTTGTTCGCCACCTGAGTTAATGCGCCGCCA 4770488 30 100.0 37 .............................. CAGCCATGTTTGCCGGTGTTCCCTGGAAAATCAAAAT 4770421 30 100.0 37 .............................. ATCCTTTCCTGGCTACTGGTGCCGCTGGCCGACTACA 4770354 30 100.0 36 .............................. CAACCTAGCTCAGGGAAAATCACAGGGATGCCAGCA 4770288 30 100.0 36 .............................. AAACTGTGCCATCAGAAAAGGCAAGATAGTCACCAC 4770222 30 100.0 38 .............................. TGCGGTCTTTCCCTCTCCCGCCATGGCAGTGCTTTTTG 4770154 30 100.0 37 .............................. TCAGCTGGGGTAAAGTTCATTCTGGACCACGTGGACT 4770087 30 100.0 38 .............................. GCGTATGTGAATGCCCGAATAAAACCTGATCCGAATTT 4770019 30 100.0 35 .............................. ACCGCATGTACTAACCTTTCAATAAACTCATCAGG 4769954 30 100.0 39 .............................. CCGGCATATAAGTACCCTCTATCGGCCTCCGTATTCCCT 4769885 30 100.0 36 .............................. CAGTGATTGGTGCGCGCCAACCTTGCGACATAATTA 4769819 30 100.0 38 .............................. TCAAGTTTGAAGTTTGTTTGAAAAACAGTGGAGAATCT 4769751 30 100.0 39 .............................. TCGTCGACGACGGTGCGCCTGTCAGCGGTTCGGGCGCGT 4769682 30 100.0 37 .............................. TGTCAGCCTGCTCTTGGTTCTCGGCTGTGACGCCAAG 4769615 30 100.0 38 .............................. TCAATTCGCCACTGCGCCGGGAGTTGCAGACGCTTTTG 4769547 30 100.0 37 .............................. GCCGGGTGACGGGGGAAGTGCAGGGTTTTTTGCTCGA 4769480 30 100.0 38 .............................. ATAAAAAAAGTCAACTGCAGCGGGGGAATCACCCTCCG 4769412 30 86.7 0 T.......G...................CG | G [4769407] ========== ====== ====== ====== ============================== ======================================= ================== 25 30 99.5 37 GTTTGTAGCTTACCTATAAGGGATTGAAAC # Left flank : ACAAGCTTGAGGAGAATGAGATTATCGTTCAACTCGGCTGGGGAACGGGCTATAAAGTTAAAACACTGAAGGAAGGAGTTCCCGAGGAGCTATTTACAAGGATTGTCAGACGGTTTAACATGACCCGACGTGAAGATTTCCCGTATCCGAAGACCCGTAAGGTTATTTTTCGGGATGGTAGACCGGAAACTGTTCCCGGATTTATTAAACTTAAGTTTTTATGAAAGATGTAAGACTGTAAGTACCTGGGTTTGCCGAATATACTGTCTGCTTGTTTGGAGGCAACGTTAAGGTTGCTTTGGAGTATAAGTGTCGTCGACCTATGATAACGCAAAAATGCCGGGAGGTCGACGACAACATTATATTTTTAGTTAGAAGACTCTTGCGCAAGGATTTCTGCGGATGCTTATAGTTTTAAACATTACTTTTATGATATTATTCAGGTAAGATTATGAGGCAATGGTGTTTTGACATATAATGATTTTCTTGGCTTTGAACGG # Right flank : GTGGGGGATGAATTGCCGCCCTGCTTGTGATCATCTGTTTGTAGCAAGCCCTGTATACATACCTAATCTCTCACTAAGGTCGTCTACCCTGGTAGGCGGTATTTTTTGTAGTTAAATAAAAAAAGATGACTCATATTCATTAAAAAGACGAGTCATCTTTCATACAGCTACATTCGTGTCGTTCTATTGCTGCGGTACTGCAGCCTGTAGTAGTAACCTGGCACCGGCTACTGTTGCGGCATTGAGGGCCAGGGGGATGGTTGCATTCCATATTGCCACATTTGATAATTGGCGGTAGTACCTCTTAGGCTTTGTATCGCGCCAGAAATTTCATTTAGCTTGTGCTGGATTGTATTTAAAACATAGGCAGACATATCTAAACGCTCATTAATGGCTTGGTTAAAAAACTGGGTGGATTGCGATACTTGGCTAGCTTTATTTCGGATATTTTGAACTAGGTTAACAGCATTTTGGGGATTGCCGGAATTGATGGCCGCGAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCTTACCTATAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA //