Array 1 30180-28016 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061096.1 Roseomonas sp. 1318 plasmid p1318-5 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30179 29 100.0 32 ............................. ACCAAGTGGGTTATCGTTTCGACGGGCGAAAA 30118 29 100.0 32 ............................. ACTACCTTGCTTTACACTAGGAGCCCTCTTAC 30057 29 100.0 32 ............................. GCGTATGCCGATCAACCCGGATACGCCCCCCT 29996 29 100.0 32 ............................. CTTGACCTTGAATACGCGCTGATTGGCTCTGG 29935 29 100.0 32 ............................. GAGACATACTTGCTGTCGCCCGCGTGCAGCGG 29874 29 100.0 32 ............................. TCACCGACCCGAACCTCCCCAATCCGGAGGGC 29813 29 100.0 32 ............................. ACCATCAAGCTTGCGGAGGCAATCAACGACCC 29752 29 100.0 32 ............................. TCGCCGTCGGTCATGTAGCGGGCGGCCTCGGT 29691 29 100.0 32 ............................. ATCGCCGCCCGCAACGTCCGCAGCGGCGACAA 29630 29 100.0 32 ............................. GCCCGCGTGATCATTGAGATGCCAAAGGGCGA 29569 29 100.0 32 ............................. GTGACGGCTTACATGCTCGCGAGAGACGCCCT 29508 29 100.0 32 ............................. TACGGCCGCGAGTTCCAATACTGCTCGTTCGT 29447 29 100.0 32 ............................. GGCAGGCCACAGTCAACGGCGTTGCCTACTGG 29386 29 100.0 32 ............................. AACTACCGGCGGAATGCCGCGAACACCGGCTG 29325 29 100.0 32 ............................. CGCTACGACCAGGCGTCGCCGACCGAGCGCAA 29264 29 100.0 32 ............................. GACCTGACCGATGGCCTGGTTGTGGACGCCAG 29203 29 100.0 32 ............................. AGGCGATCCTGCGTCAGGGATATGGCGACTGG 29142 29 100.0 32 ............................. GCCGCGAAGAACGCCGCGCAATGGGTCCAGTG 29081 29 100.0 32 ............................. GGCGCCGAGGCGAACCTTGAGACGGCGCTGGC 29020 29 100.0 32 ............................. CCCGGCAGGTTCTCGGTGAACCGGCCCGCCTC 28959 29 100.0 32 ............................. CCGTGCCGAATGCGGTCATCGTCGGGCCTGAC 28898 29 100.0 32 ............................. GTGCATCTCCCGCTGATGCGCGGGACCATCGA 28837 29 100.0 32 ............................. ACCGTCGCGAAATCCTTGTAGGGATCGCGCTT 28776 29 100.0 32 ............................. GAGCCCCCGCATGACCCCGCCCGCTGACACCG 28715 29 100.0 32 ............................. ATATCGCGAATGTCGTCACTGAGGGCCTTGCG 28654 29 100.0 32 ............................. CCGACAGCCGTTTCGCGGTTTCTGGCGACCGG 28593 29 100.0 32 ............................. CTAGAGGACGCGATCGCCGAGATGGCCGCCGA 28532 29 100.0 32 ............................. GGCCGCGACAACAACGCCGACATTGCCGCCGA 28471 29 100.0 32 ............................. GTCGCCTCCCAGGAGCAGGCCCAGGCGGCGAA 28410 29 100.0 32 ............................. ATGCAGGCTGGGGGTGGCGGCGCTGCTGCCGC 28349 29 100.0 32 ............................. TTGTAGAGCCAGTCGAAGCGGCGGAACATCCC 28288 29 100.0 32 ............................. CCGTCGCAGGGGCGCTCGCCCTTTATGACCAG 28227 29 100.0 32 ............................. TCCTCGGTGGTGGGCTTGAAGGCGATGGGGCC 28166 29 100.0 32 ............................. GCCCTCTGGGAGATCATGGGCGAGCCGCTGGC 28105 29 100.0 32 ............................. GCCCGATGGGCGAGGCAAATGGAAAGCCTACT 28044 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 36 29 100.0 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : GAGGAAGTCCTGGCGGCCGGCGGCTTGCCTCTCCCCGAGGCACCGGTTGAAGCCATGCCAGTTGCTTTCACCGATCCAGATAGGCAGGGCGATGCTGGTCATCGTGGTTGAGAATGCGCCACCGCGACTGCGTGGCCGTCTGGCAGTCTGGCTGCTGGAGGTACGGGCGGGGGTCTATATTGGAGCCTACGGCCGCCGTGCGCGGGAGATGATGTGGGGGGAGGTCTGCGCCTCCATCGAGGAGGGCAATGCCGTTATGGCTTGGCCTGTCCCGAACGATGCTGGCTTTGCTTTCGAGACCTGTGGAAGGAACCGGCGCGTCCCGGTTGAGCTTGACGGGTTCCGCCTTGTCAGCTTTGGCCCCGATGTTGCACTCCCTACCATGCCGGGGCCGATGGCAGGTTCTGGGCGCCGTCCCGGCGGCGGTGGATAGAGGCACTGCGGTCGGTAAGTTCATTGACAATAGAATATGCACGTGAAATCAATGGCTTCTAGGAAGA # Right flank : CCGCGCATGGCGCCATTCTCCGCCGGCTGCACCAGGACGGACTGCCCCTTGGTCCCGGGGCCATTGGGATGCACGGTGATCCAGCGCGCGCCAGGCAGAAGCGCCTTGAACAGGTCGTAAAAGGCGCTTAGGTATTGCGCTGCCTGGATCGGACGCCTGGCCTCGGCTGGGCTGGCAACCGGGTGGAGTTCTGCTCCACCGTGACCGGATGGCACAGCAAACGGAAGAACCGCGTGGCTACCCAACACCCCGGCCAAAAGGCCGGGGTTTCGGTTTTCTTGAGGGTGTTTGCGTGTTCCCCGCAGGCGCGGGGAGGAACCGGACGAGGCCAGCAACACGCTGGCGCTGACCAGGCAGCAGGAAGGCGGAAACGCCCATCGATGGATGCTTAGGCCTCGCCCACGTTCGACAGATCGGCACGCATCGTCAGTTCGCGTGCGTGCAGTGTCGCAGTGTGTCATTACCGCTGCGCATCAGCAGCACCGGGGACCAGATGGTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [25.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22945-25269 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061098.1 Roseomonas sp. 1318 plasmid p1318-7 Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================== ================== 22945 28 100.0 38 ............................ CGGCGGAGCACGGTGTGAACCGTGGTGCGGGGCGCGAT 23011 28 100.0 37 ............................ TGGCGATCGCGAACCAGTCCGGCTTGTTCTGGTTCGT 23076 28 100.0 37 ............................ GGCCCGTGAACCGGTCCACGCCTGAGACGACGACACG 23141 28 100.0 38 ............................ GCGCCGACGCCGCCACGCAGGCGCTGCGCTTCGTCGCT 23207 28 100.0 39 ............................ CCCGAGAATCCGGTCTACTCCGTCACCCTCATCATGGAC 23274 28 100.0 38 ............................ TGGATGACGACTACGCCAGCGAACCCCCAGGGGAGATC 23340 28 100.0 36 ............................ AGGACTACCATGAAGACCAAGCCCCTTATCATTGAT 23404 28 100.0 37 ............................ AGGGGGCCATTGCGCCGGGCTCGCCGTAGTCGCCCTC 23469 28 100.0 38 ............................ CGCTGGGTGGGGGCATCGGACAGCTATTCCGGCAAGGC 23535 28 100.0 38 ............................ CTTCGACGGCTTTGCCGAGGAGATCACCCATTGAACCA 23601 28 100.0 37 ............................ GGGCCCGCGGCAAGCACGGCGTGGAGCCTATGACGGG 23666 28 100.0 37 ............................ CCGACTGCTCAGCGGCAGCCAGATACAAGTCGATCAT 23731 28 100.0 38 ............................ AAGATCGACGTGTTCCTGCAGTGGTATGGCCGGCGCGG 23797 28 100.0 38 ............................ AAGGCCAAGCGCGCGCCCTACACGGTGAAGCCGCTGAA 23863 28 100.0 37 ............................ AGGAAGATCGGCGCGCTGGAGTGGGCATTCGCAGATA 23928 28 100.0 37 ............................ GCTGGCGGAGTGGCGGGCACCACCGCCGCTCAGGCGG 23993 28 100.0 37 ............................ GAGCGGAGATAAGGCCCTCCCGACCTCCCAGGAGACC 24058 28 100.0 36 ............................ GGCAGAAATGCAAGCGCGGCTCGACGCAAAGATGGA 24122 28 100.0 38 ............................ TCCCACATCAGCCGATCCAGCCCGAGCCGCGCATACCA 24188 28 100.0 38 ............................ GCGTCGCCGACGAGGAAGCGCCCGTCCGTCAAGATTGA 24254 28 100.0 42 ............................ GGTGGTGGCGGCGCCGACCAAGCCCGCCCATGGCGCGCAGGT 24324 28 100.0 38 ............................ ATGCGGGCGCGGACACGGCGCGAGCCCATGTTGGCGGT 24390 28 100.0 36 ............................ ACGCTCTCCACCGCGCCGTCTGGTGACGTGTTCCTG 24454 28 100.0 37 ............................ GAAAACCTGCCGGCCGTCGTCGGCACTGTGGACAACC 24519 28 100.0 43 ............................ AGCTTCCATGCGGATAGCGGCGCCGCCAAAGCGGATGACGACA 24590 28 100.0 37 ............................ GACAGTTGGACGAGGACGGCCGCCGGCACCGGGATGA 24655 28 100.0 36 ............................ AACTCAACCTTCGCCGCCATCAGGCGCCACGAATGC 24719 28 100.0 37 ............................ GACCCGCCCCGATTTGCCTCCTGTCGTCTACATTGTA 24784 28 100.0 37 ............................ GGTTCAACACGCACGCGCAAAAGGTCAACGAGGCTGA 24849 28 100.0 38 ............................ ACTTCAGGGTTACAAGGGTCGGAACTCCGGAAGGCTGG 24915 28 100.0 38 ............................ GAGATCAACGTCGCGGTGCCGGAGGTCGAAACCGGCAT 24981 28 100.0 37 ............................ AGCGCGCGGGCAGACTTCATCTCTGGGGCCTGCTCAG 25046 28 100.0 37 ............................ GCCGCACCCGCCGCATCAAGCAGGCTGATCTGTTTGA 25111 28 100.0 36 ............................ ACAGGAGGCTGAGCGGTTCCGCCGCGAGTTGTCCTG 25175 28 100.0 39 ............................ TGGCGACGGCTTCTCTTATGAGTGAGGCCGCCCGGTCAT 25242 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =========================================== ================== 36 28 100.0 38 CTCCTGACCCCTCATGGGGATGGTTCAC # Left flank : GCTTGCGGAGTTCGTTGGACACCCGTAGCTGTCCCCAGGCGGGCTGGTCGATTGCCATCTCGACCACTGCTGCCTCAATGGCCGGGTCGATCCGGTTCTTCAGGTTTGGCTTGCGCCGGGAGAGTTCCTGAAGCGCAACCTCGCCGCCCTTCTCGTACAGGTCCTTGAACCGGTAAAAGCTGTCCCGGCTGTAGCCCATGATCTTGCAGGCCTGGCTGACGCTGCCGAGCTGCTTGGCCAGCTCCAGCACCCCGACCTTGCCGCGAATGATCTTCTGCTCGCGGGTCATCGTGACCTCCGTCCTCAAGGACGCCTGCTAGCCCTAGCCAGCAGGTCAGATGCCCACCACTTCACCACTGTCTGTCAGATTAAGTCGATACCTTTGCACCTCATCCGACAGCCAGAACAACCGCGCCATCTCAGCCTCCTGAGCCGTTCAAACCCGTTCAGGAGATAAAACACCAGCAGCGCCAATAAGTTGTATGGGTTCCCTACCTAGT # Right flank : CCCTCGTCATTTCAGATAGTTACCTAGCTCGGTCCTGCCTGTTTGAGAAGCCGCACCGGGGAATAGGGCAGTGAGAAGGCTACGCAGGTGTAGCATAACGGCACCAACGTGGAGAGTAGTCGCTCACAGAACCATGTTATTCTTGATGTGGTGATCGTGCGCAACGTTCCGCAACGTCGCGTTTGTGTCGGATTTGCAGAGCAGCGAGACGGCCACATTGTGCCGATTTTCAGCTATGACCTGGAACACGCGGTCGTCGTCTCGCGCGATCTTCGCGAGTTCCCGGTGCAGGCGCAGCAATGTTGCATTGGTCATCTCACCTCCAAACACCGAATTCTGTTCCTGCACGAGGTAGCGTGAAAGCAGCTTGTGGAACCGCCTTGTCCGGCGCGCCTCTACGTCATAGGTAATGAGCACGTACATGCTGGCCTCACACAGACCGCAGGAACGGTTTGTACTGGCCAAGACCGAGAACGTGCCGCTCCAGCGCCAGAGCTTCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTGACCCCTCATGGGGATGGTTCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //