Array 1 781064-781247 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADVG01000005.1 Ktedonobacter racemifer DSM 44963 strain SOSP1-21 Krac_Contig202, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 781064 38 100.0 35 ...................................... ACCCGAGCACCAAGATGAGCGATCAGTGGCAATTG 781137 38 100.0 35 ...................................... CTTGGTCATGCTCATCCTTTCAAAGAAATAGTATA 781210 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== =================================== ================== 3 38 100.0 36 GTTACAAGGCAGGTTATCGCGCTTCAGCGTTTGCCGCC # Left flank : TCTTGATCTAAGCGAGCAGGAACCCAGGAGCGAAGAATGTATGATGCCTCTTGCGCAGCTTGCGATGCTTCGCCCCCAGGCAATGATTCAGCCATGGTTTCCTGCTCTGGTGTCGGAATTTGCCAATAATGGTGTGACCTGGAGAGAAGTGATTGCTCCGAACGCACTTTCAAAAAAAAGAGTACTTCATCTCGATGTCGCCGTCTGGCCACTCACACTCCTACGACAGAATGGAAGCGGGAAATATTTTCTTCGTCAAGCCTTTTTTGAAAGGAAGGAATTCAACGTCATTTCTTCATAGGAAAGGAGAAAGATACATACTATCGCGAGAGGCGATGTAGTAAACAAATTGAGCAGAACCTCTCGAACGCCTTGCAATGGCCTCTGGCGCTCAAAAGATCTAGGTCTTCACAATTTACTCCTTCTGGAAAAAACGAAAAGAGGAGCCTCTCGCAAAGAGTGTCATGAAAAAGGTATGATGCCATGAAGGGACTCTAGCA # Right flank : CAGGGAGGGAAGGGCGACTCTTCCCATCAAGAGCTGGGAGTGCCCTGGCGAAATCCGCCTCGTCCTTGGAACGCAGACCCTTGGCTTTGTAGAGCCCACGAATTGCGCAACGAGATGACCAGTAGCGAAGCAGCAGAAAAATATGCCTTCTTGATGAGGAAGAACAAAAGGATTCCTCACAAAGGAGGCATATATGAACAGTATGATAGATTCGACCGTGATCATCCAGACCACTTCACACTCCGTTCCCTCGACGCCCTCCTGGTTTGGGGAGATGGTGGTCATCGCCCGGTATCTTCAACGCATGGGTGTGCTGGCAAAGATCTCCGAGCGCGTGCGCTTCGCCCGGCGTCGGTTCGGGCGCTATGAGGTCATCGATTTTGCGGCCGTCCTCTTCGGCTATGCCGTGAGTGGTGAGCGGACACTGGAAGCGTTCTACGAGCGTGTGTATCCCTTTGCCGCTGCTTTCATGGCACTCTTCGGACGAGATCGCTTGCCTG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAAGGCAGGTTATCGCGCTTCAGCGTTTGCCGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 1240549-1240177 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADVG01000005.1 Ktedonobacter racemifer DSM 44963 strain SOSP1-21 Krac_Contig202, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================================================== ================== 1240548 37 81.1 36 ........A.T..TTC....CT............... CTCGAAAAGCTGAGCGAATATGCAGATCAGGTTGAA 1240475 37 81.1 83 ........A.T..TTC....CT............... TACGTCAGGTCAGGCTGTTCCAAGATGGGGTTCGCGCAAATAGGTGCGCGAACCCCGACTGCATCTACCTTTACGTTGTGCGC 1240355 37 100.0 34 ..................................... GTCTACGCGGTCCTCTGCCAGATCGGGAACCGTC 1240284 37 94.6 34 .......................T..T.......... AAGAGGGGCCGCAATTGTTTGCGATCCAGAAAAC 1240213 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================================================================== ================== 5 37 91.4 47 GTTGCAGCGGCCCGCAGGGGTCGCTGAGGATTGAAAC # Left flank : GTCAACGCGTTTATATGAAAACTCTCCAGTCACGTTTGCGAGATTCTCTCCATGGCGAATAAGGTAGATGGTATTCGTATATTGCGTACTCATAATCTCCTAATATATTGTAAGGGGGTAGTTTTCAGGTACCTTCTTATAGAAGGGTCTCAGCGCCGAGTCCCGCACGGGCATGTGGTGGGCACCCGAATAGGCAAAAGGTCGGACAGCGCAATTGATGTCTTTTATACTATAATTCCAACGACATAACATTGTCTAGTGATTCTTGCGGTTTACTGGCCACTTGTTGTCACGAGGCAAGGCTTGCCCGTTGGCTTCGTGAGGTTCGCGCACAGAAGTAGTCTTGCTCTGTTCTGGCTTATGTAGAGATGCTAGAGCATAGTTGCTTGGTGTGTAGCAAGAGGAAAGAGTCGCGTCAGAGCGGAAAATAAGGTATGCTAGAGGAGGTCCGCACAGTTTGGCACATGGTAAGACGCTTCTGGCTAAGTGAGAGCGTGGCT # Right flank : TCTGGTATCAAGGAGATGTGATATCATGATAATGATGCTCCGCTTGCGTGGCAAGTAGGAATTGCGGAAAGGATGGTGTGCTATGCAGTTTACTGGATCACAAACGATTGCTGCCCCGATTGAAAAGGTGTGGGCGTTTCTCTTAGATGTGAATAATGTGGCGAGCTGTGCGCCGGGCTTTCAGAGCCTGGAGCAACTGGGCGAAGAGCATTGGAAGGCCCTGATTTCGGTCGGTGTGGGACCCGTCAAAGCCAAGTTTAACCTGGATGTCACGCGCCCGGAGAAGCGCGAACCCGAATTTATGGCCGTCAAGGCACGTGGCAAAGCACCTGGCAGCGCAGTCGACCTCGCGGGCGATATGCAGTTAAGCGCCATCGATGCCAATCAGACGAAGATGGACTGGAATGCTCAGGTGACGATCAGTGGCTCTATTGCCAGCGTCGGCGCGCGCCTGATCAATGGCACCGCCGAGAAGATGACCAACCAGTTCTTTAGCTGTC # Questionable array : NO Score: 4.38 # Score Detail : 1:0, 2:0, 3:3, 4:0.57, 5:0, 6:0.25, 7:-1.16, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCGGCCCGCAGGGGTCGCTGAGGATTGAAAC # Alternate repeat : GTTGCAGCAGTCCTTCGGGGCTGCTGAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.60,-15.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : NA // Array 1 879399-879143 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADVG01000002.1 Ktedonobacter racemifer DSM 44963 strain SOSP1-21 Krac_Contig205, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 879398 37 91.9 36 ..........C.........GC............... TTGTATGAGGTGGCTCAGCCGCGCTCATTGTGTTCG 879325 36 94.6 37 ..........C........-................. CGGTCTTATTGATCGTAGTAAACGATGTGGACGTTGG C [879304] 879251 37 100.0 35 ..................................... ATCTATAAGTAAGCCTTCCTGGATTGCAAGGCGTT 879179 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 96.6 36 GTAGCAGAGAGATCGATCCGTGAGAGGATCCTGCAAG # Left flank : CACCGAACTATCGAGATTGGGACGCAATACTGCTGAGATCATTCTGCTCGTCAATGAGCTGGTGCAGCGAGGCATTCGGCTGATTGCCTTAAAGCAGCACATTGATCTCACAGATCATGATATGAGTTCTAAAATTATCATCACCGTTTTCTCTCTGCTGGCCGAACTGGAACGCGATTTGATCAGTATGAGGACCAGGGAGGCGCTAGCCGCGAAGAAAAGCCAGGGGATCGCCCTTGGCAAGCCAAAGGGGACTATTCAGAAAAGTAAATTTGATGCGGATAGGGTGCGCATCGAAGAATTGCTGAATATCGGACTCTCCGTCCGCAAGATTGCTAAAATCCTCAACTATCCAAACCATCACTCACTCAACACCTATGTCAACAAACGCAGACTTCGCGAAAACGATACATCACAGAGCTAGTGGAAGAGGCAAATTCCTTAGCGTGCGTTTTCGTTCCATTAATACTCAGAGGCTAGATGCTTACAAAGCACTTCTA # Right flank : TAGCTTGCGGTACCCCGTATATTTTAAGAAAGGTCACGGCTTTCGGGTCAGTATGGGCTGCAAAGGGATTGTATGTATTCCTAACCTCGTTATTGGCTCAATTCCTTTACATCGTAGCCAGTCAAGCAGAAATAGAAAGAGAACTCTTCTTTTCAGGAGTTCACTTATCCATCTCAGGCTTTACTAGAAAACAACATATGTAGAAGAGGAGGCGCACTTGGGAAGTTATCAGTCAGAGAGCCGCTATTACCTGCATGTCCAGTTAGTTGGCATTGAACCACCTATCTGGCGCAAGGTGGTTGTGCCTGGCGCCATCAGTCTTCATACCCTTCACAAAATGCTTCAGGTGGTCATGGGGTGGGAGAATGCTCATTTGTATTTGTTCAGACTTACCATCAATGAGAAGACAATTGTATATGGGCTTCTTGATCCTGATTGGGAAGATGTAGGCATGCGTATCAGGGATAGCCGACGCACTACGCTCGATGCAACCGTCTGGG # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAGAGAGATCGATCCGTGAGAGGATCCTGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 2608868-2602984 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADVG01000001.1 Ktedonobacter racemifer DSM 44963 strain SOSP1-21 Krac_Contig206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2608867 37 100.0 35 ..................................... AGTGGCTTTTTGGCGTACTACTCCGGGTCATTGTG 2608795 37 100.0 36 ..................................... AGATCATGGGAGCGGTTCACAATTCGCAAATCTCAC 2608722 37 100.0 36 ..................................... TTGGTATAATCCGCCACATCCAACCTATCTCGCTTG 2608649 37 100.0 36 ..................................... AAGGAGATACCCAACATGTCAAACATTCCTAGTGGT 2608576 37 100.0 35 ..................................... GTCCAGACGGAGCCGTCCCAAATCATAATCACCAA 2608504 37 100.0 37 ..................................... GTTGTCGATATGGATACGCCAGCCTTCCAAGCTATAT 2608430 37 100.0 35 ..................................... ACGTTACCAGCTCGCGCGCCGCTTCCAGGCGTAAC 2608358 37 100.0 37 ..................................... ATAGGTAAATTGACAGCACGTTGATTATTAGCTAGTG 2608284 37 100.0 35 ..................................... TTGCCCATACAAGTGCGTTTACAATACCGAGCATC 2608212 37 100.0 35 ..................................... ACGTTACCAGCTCGCGCGCCGCTTCCAGGCGTAAC 2608140 37 100.0 37 ..................................... ATAGGTAAATTGACAGCACGTTGATTATTAGCTAGTG 2608066 37 100.0 35 ..................................... TTGCCCATACAAGTGCGTTTACAATACCGAGCATC 2607994 37 100.0 36 ..................................... TTTCAGATTGATACGCATAGGAATATCCTTTCTTTA 2607921 37 100.0 35 ..................................... ATTAACTGGGAGTACGCCAGCCACTACCAATCACA 2607849 37 100.0 35 ..................................... TTCGTCCTCCTCGGAGTCGGAGTTCTCCTCCTCAG 2607777 37 100.0 39 ..................................... GAGGAACTGGAAAACCGCGCGGAGCAATTCTCCGCCAGG 2607701 37 100.0 37 ..................................... CCATCGAGTTCCACCTCCATGGTGGTACACCCTCGAC 2607627 37 100.0 38 ..................................... CTCATAGTGTCGGACTATTGTAGGACGAGTACAGTAGC 2607552 37 100.0 36 ..................................... CTTGTATTCAACTACCTGGTTGGCTACCCAATCGGC 2607479 37 100.0 36 ..................................... ATGACCGTAAAATAGAGATTATGGCGCTCATTCAAC 2607406 37 100.0 36 ..................................... CTTCCAGAACATGGCGGCACGATACATGCTCGCTTC 2607333 37 94.6 35 ................A......A............. TAAGTGCATACACATTGGGTCATGCTGTGATTGAT 2607261 37 100.0 38 ..................................... TGGTTTGACTTGTGTAGCAAGCTTGACCCAGTGATCAA 2607186 37 94.6 36 ................A......A............. GGATGTTGATAATCTGATTCACGTCAACTGCTTGGA 2607113 37 100.0 36 ..................................... CTGGTGTGATTCCACCTGAATCTATGCAACTTTCAC 2607040 37 100.0 37 ..................................... GCTTCTATAAAAGTGGTATTGAGCGGCTGGCCATCTT 2606966 37 97.3 36 ................A.................... TCTATGTTTTACTTCGCGCTTTACGTCCTTGACACC 2606893 37 100.0 36 ..................................... GCGCTACTTTGCTAACAATAAATAAGTGCGGTATAA 2606820 37 94.6 36 ................A......A............. TTTAGCCTGGAAGATATGTTGCAGGTTAACGGCGAC 2606747 37 100.0 36 ..................................... TCCCAAAGTCGCATGACATATCTAAGGCCCTGGACA 2606674 37 97.3 37 .......................A............. CAGCGCGTCGGCGAGGCCGTGCAGGCCCCCGGCAGGC 2606600 37 100.0 35 ..................................... CTGTTGATAAATCTCTCATGTCTTCAAATCATGCC 2606528 37 100.0 35 ..................................... TAGAACAGACTGATTACTTTTCTTTAGATGCTAAA 2606456 37 100.0 36 ..................................... TCCCAAAGTCGCATGACATATCTAAGGCCCTGGACA 2606383 37 94.6 37 ...........A...........A............. CAGCGCGTCGGCGAGGCCGTGCAGGCCCCCGGCAGGC 2606309 37 100.0 35 ..................................... CTGTTGATAAATCTCTCATGTCTTCAAATCATGCC 2606237 37 100.0 35 ..................................... TAGAACAGACTGATTACTTTTCTTTAGATGCTAAA 2606165 37 100.0 38 ..................................... TCTTTCATAAATTGCTGGTAGCGTTGATAAACAGCAGC 2606090 37 100.0 36 ..................................... CTGCCTGAGCTCATCACGTACACCCCACACTTTTAG 2606017 37 100.0 36 ..................................... AACACTATTTGCTTGCATATGCCACGCTTGCTCATA 2605944 37 97.3 36 ...........A......................... AGATACGCCCCTATAAGCACTAACAGAAGAATAACA 2605871 37 100.0 35 ..................................... TCCTTGACCAGCGAGAAGCGGCGCGCATCGTAGCC 2605799 37 100.0 39 ..................................... AGTGCGTTTGTACTTTCCGGAACATTGCGCGCGTGTGAC 2605723 37 100.0 35 ..................................... ACCACTGGTAACGGTTACCACTAAACAGCAAAGGA 2605651 37 97.3 36 ...........A......................... ACGAGCACTGGTGTCTCGAACGCAACTAAGCATGGC 2605578 37 97.3 36 ...........A......................... TTTGAAGTTGGCCCGCTCATCCTCATCCTTGCCGGC 2605505 37 97.3 36 ...........A......................... ACGGCTACCTATCTCGGTGGCGGCCAGAATCACTAC 2605432 37 97.3 37 ...........A......................... GCTGATCATAGTGGTGCTGGGGATCATAGGCCAGAAT 2605358 37 97.3 35 ...........A......................... AATATCACGATCAATGCGCCAGCACGTACCAGGAA 2605286 37 100.0 36 ..................................... TATTACTAGTAATACTGCTGCTGCTCTAGTAAGAGG 2605213 37 100.0 38 ..................................... CGGCCCTCGGCCATCAGCCAGTGCTTATAGGCCGTCAC 2605138 37 100.0 37 ..................................... CGTTTAGTCTCTCCCCGATACTCCCCCTGGTTCTCCC 2605064 37 97.3 35 ...........A......................... CGGTGCTTTTTACGTCCGGTGTAGGAGAGGGCGGA 2604992 37 97.3 36 ...........A......................... GTTTCTCTCCAAGAACGCAAGGCAGAGAAGAATAGC 2604919 37 97.3 35 ...........A......................... ATGCCATATCCTTCCAATTCTCACCTTCTATCCAA 2604847 37 100.0 36 ..................................... CCGCCCACCCCGGCGCAGATCGAGAAAGAGGGCAAG 2604774 37 100.0 36 ..................................... TCGTTCTTTGAAGTAATCGGGTTTTATGAGAAGAGA 2604701 37 100.0 38 ..................................... CCTGGCTGAGTAGTCAGCAAGTAGCGCCCGCAATTGCT 2604626 37 100.0 35 ..................................... AGCAACACGCAGGTTGTGTGCGAGAGGGTGGGAGA 2604554 37 100.0 36 ..................................... GTGCTGAAGAATGCACGACCAATTGAGCCTATCCCA 2604481 37 100.0 35 ..................................... ACGTACTGCTTCCGCCTTCTGCACGCGCTCGAAGC 2604409 37 100.0 36 ..................................... AAGTAGAAGGTGCCTGCACGCTCTACTATCTCATCA 2604336 37 97.3 36 .......................A............. CGTTCCTATTTTGTCTGAGGACCTGATCAAATACCC 2604263 37 100.0 35 ..................................... CGCTATAATTCTTCCCTCCTACATTGACTTCGATC 2604191 37 100.0 34 ..................................... ATAGCTTCTTGACAGCCTCTTCAGCCTGCTCAAA 2604120 37 97.3 36 .......................A............. GATGTCTTCTCGATAGGAAGAGGTGTAGGGATTGTA 2604047 37 94.6 36 ................A......A............. GATGTCTTCTCGATAGGAAGAGGTGTAGGGATTGTA 2603974 37 94.6 37 ................A......A............. AGGAAGGTGCGATTTAGTGGGATCGACCCACAACTTA 2603900 37 94.6 35 ................A......A............. GTGGCGGTGGTAGAGGTAGATAGATGAGTGTCGAA 2603828 37 100.0 36 ..................................... TTATCACATTGCGGTGTTCAATGACGCGCGCGCGGC 2603755 37 97.3 35 .......................A............. CATACTGTTCACTCTCCTTGCCGTTTGCGAATCTC 2603683 37 97.3 43 .......................A............. TAAAGATACCTTCCGGTACTTCCATCTGGCGATAGCGTTCTAA 2603603 37 100.0 37 ..................................... ATGAAGCTGCAAAACAGAAGCACAACGAAAAAATCAA 2603529 37 97.3 36 ...........A......................... ATGTTGAGTTGCATACATTGAACGTGATACTTTGGA 2603456 37 97.3 36 ...........A......................... AAGATGGAGAACTCTACGGAAATATTGATCGGTATC 2603383 37 97.3 36 ...........A......................... ATGTTGAGTTGCATACATTGAACGTGATACTTTGGA 2603310 37 97.3 36 ...........A......................... AAGATGGAGAACTCTACGGAAATATTGATCGGTATC 2603237 37 97.3 37 ...........A......................... CTTGATAAGTTTGCAACGCGGGTCTGGGATGCGCGCC 2603163 37 97.3 36 ...........A......................... AAGGCAACGCGATACTACACGCAAGAAGATGACGGG 2603090 37 97.3 33 ...........A......................... TGCCTAGTTTGCCGTGGTCCTCGCCGCCGTAAC 2603020 37 97.3 0 ...........A......................... | ========== ====== ====== ====== ===================================== =========================================== ================== 81 37 98.8 36 GTCTGAAGAGGTAAGCTCCCGCCTGAGGGATTGGAAC # Left flank : CAAAAGACACAGTGACATCAGGGAGTTCCACCACTTGCTATATCATCGCGTATGATATTCCAGATGATAAACGCAGAATAAAGATTCACAAAATTCTCTCAGGATTTGGAACCTGGACCCAGTACTCTCTGTTTGAATGTTTTCTCTCGAAGAAAGAGCTAGTCTTGCTTAAATCCAAGCTGGCACGGTATACTAGGGATACAGAAGATAGCATACGCTTCTATCCACTTTGCGTTCACTGCCTGGAAAAAGTGGAAACCGTAGGAGGAGCGCCTCCTGCTGAGGCCACCATTTTTATTGTGTGAAACGTAATGACACATCGCGCGGGAACCACCTGCACCCATGGTCCTGAGCTCAGGTTCCCGCAAGGCTCTAGAAGCCATCTAAGCACCTTTCCAACCAAAAATGCCTAAAATTTGCCTCCAAAAAAGCGCCAAAAAGCGAGGTTTCCGCAAACAGCATTGCCACCCCGCCTCCCAGGCCGCGCGGGAACCTCCGCC # Right flank : ACTGTCTATTGCTCATTGTTGTATCGTCCTCCATCATGTCTGAAGAGGTAGGTGTGATGGTCTCTCTACAGGAGACAACGACGTATTCATCCTCTCCGCTAAAGGTGACGCCCAGAAGGTCGTTGACGCGTTCTGTCAACATACGCATGGTTCGCCGTGTTCCCCTGGGGTCGCTTTCCTGGGGCTGCTGTGGCTGCTTGGTTTGGATGGGGTATGCTGGCGTGGCAATCACTCTCTTCCCTCCTTCATAGGTGTCGGGCTAAACACACCGTTTTCGTTCTTGTAGACGATACGCTGCTCTCCGACCGTGACGATCATGTCAGGCTTGCCGTCTCCGTCCAGGTCTTTGAATGTCACTTGTGCAGGAGTCAGGTCTTGGCTACTTCCTAACAACGCTATGCCTGTCTTGTAGGCGTGTGTCTTGCTTGGGTCGCCTGCTGGCAGTTCAATGACAGAAATCTGGCCGTGGAGATTGAGCACAATGAAGTGGGATGGGGTCG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAGAGGTAAGCTCCCGCCTGAGGGATTGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 2 2622906-2622575 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADVG01000001.1 Ktedonobacter racemifer DSM 44963 strain SOSP1-21 Krac_Contig206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2622905 37 100.0 35 ..................................... TGTATAATCCGCCACATCTAGACGATCACGCTTGC 2622833 37 100.0 37 ..................................... ATGCTCATCGTGGCGGCTGGCTTTGGACTTGCAATCA 2622759 37 100.0 37 ..................................... ATGCTCATCGTGGCGGCTGGCTTTGGACTTGCAATCA 2622685 37 100.0 36 ..................................... TCTTTACTGCTAAATTGAAAAGCTAGCAATTTCTGG 2622612 37 91.9 0 .............................GG..C... | A [2622585] ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 98.4 36 GTCTGAAGAGGTCAGCTCCCGCTTGAGGGATTGGAAC # Left flank : CGGGAGCTGCGTCTCCCTCAGGAGATTGCTAAGCTTCAGCAAGTCGCCTGTCTGATCCTGGATGATATTGGTTATGTCCAACAGGATCGGGAAGAAATGGAGGTGCTCTTCACGCTCCTTGCCGAGCGCTACGAGCAACGCTCGGTGCTCATTACCACTAATCTCGTGTTTTCTGCCTGGGATCGGATCTTCAAGGATCCCATGACCACTTTAGCAGCGGTCGATCGTGTGGTTCATCACTCAGTCATTCTCGATATGGCAGGGGTGGAGAGCTTCCGTGCAACTCAGGCGCGGGATGACCATACACCGTCCGAAACGGGAGTGGGAGCAGCAGCAGCTCCGATGCCGTAATCGACACCTGGTTCTGAGGTAATCGGCGTTCCTTGTTCAGCTTTTCTGTTTTTTTTACCAGGGAACCCTTTTCGGTCAGAGTAATCGCCATTTGATGCCGATTCTTATTGACTTTCAACAGTAGAGGCGCATACTTTTGCTAATGATCC # Right flank : TAAATCATAGATAGAAGTCCCCTATTGATCGAAATGGCTCGACTGAGAGCACGTACATTAATAGTGATATAGATCAAAGTATTGAGATTGGCAACGGACCGACCATTGTGGACGCGTGGCCGTTCAATGCCCAACTCCTTTGCCTGGCTGTTGATGCGTTCACAACTGGTTCGCTGCGTGTAAATGGCCTTGTAGAGGGGGCTGCTGCGATCCAAGAGCACACGCATGAGGCCACCAGACTCCCAGTTGGGATCTTTGTGGCATCCTTGCCCGTGATTGGATGAGAGCCGTTCACAGGCCTCCCCAGTCGGAGTCGGGAAGAGCAAGGGGCAGCCAAAACGCTGAGCACGATAGCCGTTGGTGTGCTGGAACAGAAAGCGAGGGATCATGCGCAGCCCTTTGGCACACCTGGGAACGCCATCGAAATCGCGGTGCATTTCTGCATGCCCATGGCCATTCTTGGGAACGGCCGCGATGCCCCCATGTCAGGCAGCGGCATC # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAGAGGTCAGCTCCCGCTTGAGGGATTGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 2629073-2625449 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADVG01000001.1 Ktedonobacter racemifer DSM 44963 strain SOSP1-21 Krac_Contig206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2629072 37 100.0 35 ..................................... CGCTCCCCCGCCACTTGCTTGGCCTCCCCTATAGG 2629000 37 100.0 35 ..................................... TCTTCGATTCTCGTATGGTGCCAACTGGCGCGAGC 2628928 37 100.0 36 ..................................... GGCATCGAAACTGGAGATACTGAACAAGAAAGGCTG 2628855 37 100.0 37 ..................................... GGGCCAGGACACCTCGCGCGCGATCCTGGTGCTATAT 2628781 37 100.0 36 ..................................... CATGACACTCTATCCCTACACCGCTATAGGGATCGC 2628708 37 100.0 37 ..................................... TATCAAAGCCGTCAAGTAAACCGCCGGGGTGGCTCTC 2628634 37 100.0 36 ..................................... AGACCGCTATTTTGTGCGACGTTCCATAGGAGACCG 2628561 37 100.0 35 ..................................... AATACAGACAGTAAAAGCTGATGGCACTATCCACT 2628489 37 100.0 36 ..................................... AATGCTGGTTAGTTAGCAGACGGGCGGGCGTATGCC 2628416 37 100.0 36 ..................................... AGCGAATATGCTGGAGCGCTGGATGCAACAATATTT 2628343 37 100.0 36 ..................................... AGCGAATATGCTGGAGCGCTGGATGCAACAATATTT 2628270 37 100.0 37 ..................................... AATGCGTTAAGGAGCGGCATCCACGCCCGCACCTTAT 2628196 37 100.0 35 ..................................... TCGCATCCTGTGAGCACATGCCCCCACAGATAGGC 2628124 37 100.0 35 ..................................... ATTCCCTATTGCAAGCTAGAATTGTACGCTATGTC 2628052 37 100.0 36 ..................................... TTGCTGATTATGCTTTTCGGCGTGCTTCATTTCGCG 2627979 37 100.0 37 ..................................... CAAACACATGATATTCGCTAACGTAGGGGATGACTCG 2627905 37 100.0 37 ..................................... CCGTTAGGAGTGTTCAGGAGGCTGTCAGCCGTGTCAA 2627831 37 100.0 36 ..................................... ATTGCGGTGGCAGGTGTGCCGGTCGTGCCGTTAGAC 2627758 37 100.0 37 ..................................... TCATTCGATCTGGAAGGCTCCGGCGCGCTTACATATG 2627684 37 100.0 37 ..................................... AACCAGATCGCTAGAGAGCGTGTAAATGGATGAATGA 2627610 37 100.0 37 ..................................... TGTGTGTCTGTGCTAGAGAATACCGTGATCCTCGACC 2627536 37 100.0 37 ..................................... TAGAAGTAGTGAGAGCCAAGGCTAGCAAAAAGATGGT 2627462 37 100.0 35 ..................................... AGCTTGGTGGCACCTACGGTGCCCATCCATTCGTC 2627390 37 100.0 35 ..................................... CCTAAAATAATTCTTGAGGCACTGCCTGAGATCAT 2627318 37 100.0 35 ..................................... GGTGTATCTTTGGCGTTGTACTGACTGTCGATGAT 2627246 37 100.0 35 ..................................... AGTCACTAGGTGTTGGTTGAATACCAGCAGGCATA 2627174 37 100.0 36 ..................................... CTGGACAGGTCTATCGTAACAAAGTTGGTTTCCTGA 2627101 37 100.0 37 ..................................... TACATGGATGCCCTCTATATCCTCTCAGACAATCCCA 2627027 37 100.0 38 ..................................... TTTGATGGCGTGGATGTCCATGTGTAGACACTCGCCAT 2626952 37 100.0 35 ..................................... TTTTCGTCGTCAAGAAGCGCGCGAAGCATCTTTAA 2626880 37 100.0 37 ..................................... ACGTCTCTCCAGGCCGGACGATATGCGAGCCCGTCCA 2626806 37 100.0 35 ..................................... GCGGTCAATGTAGAAGTGCCACTCGCCGCCCTTGT 2626734 37 100.0 37 ..................................... TGGCCGACTGGTGGGGCGGTACAGGATGTACTGGGGC 2626660 37 100.0 35 ..................................... TTTTTGATATCAGTTGGCACTTTCCCGACGACTGG 2626588 37 100.0 36 ..................................... AAGGAACAAATGGACGCGGCCGGATCGACACTTAAT 2626515 37 100.0 37 ..................................... CCGCTCCTATTCTTGTTTCTTGGAGTGAAGAAATTAG 2626441 37 100.0 36 ..................................... ATGTTGACACGGTATTCCCTATATTTGTTTGCCTAG 2626368 37 100.0 36 ..................................... GGTGTGGTGCTAGCACAGAAGGCCAGATATGGCTTC 2626295 37 100.0 37 ..................................... TGGTGTCTACATTGTGCAATGAAACAATTCGCGCATT 2626221 37 100.0 37 ..................................... GTGGGAGCTCCTCCCCCGGAGCCTCCACTTTTTTCTG 2626147 37 100.0 36 ..................................... CAAGCTTGGTGCACCAAACGTGAAAGGTTCACTTTC 2626074 37 100.0 37 ..................................... TCAACTTCATTCGTGCGATACCAATACACACCACTAG 2626000 37 100.0 36 ..................................... CGATTGACTTGCATTAACTTGTAGATCAGCCGTGAC 2625927 37 100.0 36 ..................................... TGTCCTGACCATTACGGGGGTAGGGAACTTCTCGTA 2625854 37 100.0 38 ..................................... ACTGCATTCGTACCTAGAAGAAATAGGACTAGTATTAA 2625779 37 100.0 37 ..................................... GTTGCTCATATTCTGATAACACAACTTCTTGCTCAAG 2625705 37 100.0 37 ..................................... GCCATAGGGGATAAACCCACAGCCATGGGATAGCACC 2625631 37 100.0 37 ..................................... TAGTTAACCGTTTCACTACTCCTGTAAAATCCATACA 2625557 37 100.0 35 ..................................... TTTAATATTTTCGTCTGCATACTTACGTACTTCTG 2625485 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 50 37 100.0 36 GTCTGAAGAGGTCAGCTCCCGCTTGAGGGATTGGAAC # Left flank : CTGTAGGCGGCGTACTTCCTTTTCTGCTTTCACCTGGCGTATAACAACGATACAATATAACAAAGACAAATTTCTATGTATTAGGCTTAAAAGGCTATTAGTATTTTTGTCTCGACATAGTGTTGATAATGCGAGAAGATAAAAAAGAACAATTGATTGACATGCCATTAGCAGCCAGGATGCAATCAGCATCCGCAAAAACAAGCCATTTCTCACATGAACGAAAATACAGCTTGCGAATAGAATCCAGGCAAGATATACTACGATGAGCAGAGTAATGTAATGTATTTCCCACGCCTTCTGGAACACGAAGACACATCGCGCGGGAACCACCTGCGCCCGAGGTCCTGAGCTCAGGTTTCCGCGGCGCTCTAGAAGCCATCTGAGCACCTTTTTAACCAAAAAACACTCGAAATTTGCCTCCAAAAACGCGCCAAAAAAGGAGGTTCCCGCAAACGGCATCGCGATCCAGCCTCTCAGGCCACGCGGGAACCCCGGCA # Right flank : CTCTGGAGTAGATGTTGAGAGATAATTACCGCGTCCGATGGCGACAATGAGAAAGTCCGGCCACCTTGAGGCAGAAATCCGCAAGATGGCCTAGAATGACACTCATATCAAGCAATGAGGAGAGTGTCATGAAGAAAGACGCGGAGGTTATGTTGTATATGCGGGAAAGACACAAAGGTACTACACAGCAAGTAGCTGCGGCACGGGCAGGCATGAGTGAACGCACTGCCCGTCGGTATGAACGAGCCGGGAAATTGCCCAGCCAGCTCAAACGTCCCCGAATCTGGAGAACACGTGAGAACCCTTTTGAGGAAGATTGGCTCTGGGTGGTGGAACAGTTACAACGCGATCCAGCACTGCAAGGGGCAACCTTGTTTGCTTTGTTGTGTGCACGGCATCCGAGCAAATATCGCCCGACGCAGGTACGCACCCTGCAGCGGCATATTGCGACCTGGAAAGCGACGCAGGGACCGGACAAAGAGGTCTATTTTGAGCAAGTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAGAGGTCAGCTCCCGCTTGAGGGATTGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 4 2641283-2640580 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADVG01000001.1 Ktedonobacter racemifer DSM 44963 strain SOSP1-21 Krac_Contig206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2641282 37 75.7 37 TC....TT..T.GCA.C.................... ATCTTATATTACGTGCTCGACCTGTCCCACTGGCAGG T,T [2641262,2641274] 2641206 37 100.0 37 ..................................... AGCTGGGCCAGCCTTGCCACGGCAAACTGGTAGCGGG 2641132 37 100.0 36 ..................................... AGTAGGGAATGCTGGGGCGAGGCGACACCTGCTCTG 2641059 37 100.0 37 ..................................... TGATCGTATCTGCCTCTAGCTGTCGTTGCAGTTGTTC 2640985 37 100.0 38 ..................................... AGCAGGTTCATTTCGATGGTCGTCTGCCCCTTGTCGTA 2640910 37 100.0 34 ..................................... TCTGATGAAACTATCAGGCGCATGATTAAAACAG 2640839 37 97.3 36 ...........A......................... AGTATGCATTTCGGAGAGGGTGACAAAGCACTGGCG 2640766 37 91.9 37 ...A.......A..........T.............. AGAGTTCGTCGTCCGGCGTTACGCTATGGACCGTTGG 2640692 37 83.8 39 ...A.........G..A.....GA........A.... TTGTCTCTGCTGGCGCTTGGCGCTCGTTCTGGTGGCCGC 2640616 37 86.5 0 ...A.......A.........AG............G. | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 93.5 37 GTCTGAAGAGGTAAGCTCCCGCCTGAGGGATTGGAAC # Left flank : ATCAAAGCCGTAGGGAGCTGATGGATCGAGCTCCAGGTGGAAGCCCAACTCGATGATGAGCAAGGGATGTTTGAGCAAAAAGCGCCGCAGTTGGGTCGAGTACATGAAGCCTTCACGGATGCGTAAGAGGAAGGCTTTGATGTAGGCCGCTTCGGAATGAGTCGGTGGACGTCGATGCAAGGATTGTTGGTCTTCCCACTGCTGCACGAGGGACCAATCGAGCAAAGCGAAGAACTGGCGATAGTCTTGCACGACCGGATCATGATCGAGAAGAGTGGTCAAAATAGCCTGGTCAAAGACACAAGAAACAGGTATCATAACCGAGGACTCCTTTGCTGAGGAAAATGTGGTTATGATTACTTTGCAAAGGAGACTTTCTTATGTCAAACATGAGGGACGTTTCTCATGAAAACGGGCGCATTTTCAACTTCTGATTTACTTGCTCCTGTGTTTAGAGAAAACGAAGACGATCAAGCATCGACAAAAAGGCCGATTTGCAT # Right flank : TTCTGTTACTTTGATGGGGTAGAGGTCCCAGCGCTCAATTGGAATAAGCGCCGGGCCTCTGATTATTGGTGAGGGTGGTGATGGGGACTGGTTTAGCGACGTCGGCGGGCTTCTTCGCGGATGGTTTGCAGGTTGAGCAGTTCCGCGACTTCGTATTGGGTGATAGGGCCTGGCTTAGGGCGCAGGCGGATGAACGTGGGGAAGTGGCCTACTCGCCCGTGGAGTTCGGCCAGGAGCAGAAACGCAGCTGGCGCGTAGCCGGGCGGGTTGATCAAGATGTGGCGTGTCTGCCATTCGTGAGAGGTCAGTCCTGCGACCTCAACCAGGGTCTGGATCTGCTTTGAGAGCGATTGGGCCTGGTCGATCTGTACCGGGATGGTGCGTACCTCCTCGATGGGACGCTGTGCTAGCTGTTCGATTTGTTTGCATTGTTCCTCTGTGATTGGGTGCGTGAAGTTAAGTACGAGCATCTATTTTATATCCTTTGGTAATCTGGCTTA # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAGAGGTAAGCTCCCGCCTGAGGGATTGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 5 2645980-2642793 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADVG01000001.1 Ktedonobacter racemifer DSM 44963 strain SOSP1-21 Krac_Contig206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 2645979 37 100.0 38 ..................................... CGCAGAATATTAGGGAGCCAACGTCCAGCAGGAATACC 2645904 37 100.0 35 ..................................... CCAATTCAGTCTTCGCCAGCACAAGGCCGCGAAAT 2645832 37 100.0 35 ..................................... TGATCGGGGCGATCATCCGACTACACAGCGGATCG 2645760 37 100.0 36 ..................................... CATCTCAGCCAGCATCGATGCTTCCCCGTCATCAAG 2645687 37 100.0 38 ..................................... TGGCGCTGCGCTGTGCGCTGCTGTACAAGTGGTGCGAC 2645612 37 100.0 36 ..................................... GTATAGCCCTTCCAATGTGCCATACCGCCTGTCATT 2645539 37 100.0 35 ..................................... CTGCCATAATGCGCTCCAGGGATACGTTGGGCCAG 2645467 37 100.0 36 ..................................... GAAGAAATGCGTAATGTACCCTACTAAAACCGCGCT 2645394 37 100.0 38 ..................................... TACTTAATTTGTATCCAATCAGGATACCACTTACATGA 2645319 37 100.0 36 ..................................... CTTAACATGTACCATACAAGATACAACTAGCCCGAA 2645246 37 100.0 35 ..................................... CACGAGAGCGTAGAGGTAGAACGCCTCTACGCTAT 2645174 37 100.0 36 ..................................... ACTTGCGTATGTCGTTGGCAGTCTCCCCGTTCTTAA 2645101 37 100.0 36 ..................................... TGCGAGGTAAGCATAGACGAGGCGAGACAGTTAAAT 2645028 37 100.0 39 ..................................... GCGGAGGAGGAGGCAAAGGAGCCCAGCATCTTTGATGTG 2644952 37 100.0 37 ..................................... GTAGGCTAATAGACGGCCATCAATGCCGGCGGTGGAG 2644878 37 100.0 36 ..................................... ATGATGTTGCAACTCCGACAACAGGCCCGCATCAGC 2644805 37 100.0 34 ..................................... GCTTTGGCTTATGCCTGCCATAATCTGGAGCGCC 2644734 37 100.0 36 ..................................... AATAAGCTTCACAAACTCAGCCTGGGTTATCCCCCC 2644661 37 100.0 36 ..................................... ACGGCCTCCCTCTCCACTTTCAGCATGTCCGAGACG 2644588 37 100.0 35 ..................................... AGTACTTCTGGATAGTGCATAGTACACAATTCTGT 2644516 37 100.0 35 ..................................... TAGCAATGGAACTGGCATTCTTATTATGTCTATTC 2644444 37 100.0 36 ..................................... AATAACTTCATATTATTGCTCCTCGCTCTCGTTTAG 2644371 37 100.0 37 ..................................... ACTCTCAAGAAAAGAGCCTAGCCCGCCGCCCTGGCTG 2644297 37 100.0 37 ..................................... TACTCTCAAATGCAAGCTCCACCCACACCTGGCCAGC 2644223 37 100.0 35 ..................................... AGCGCCTCGCCGCCATCTTGCCTATCCACTTTGGT 2644151 37 100.0 35 ..................................... AGGAGTTACTTATGAACGCTCTAGCCAAGAATGCA 2644079 37 100.0 34 ..................................... TTCTTTTTTCCTGCTGGTGCTCCTGATATGTAGT 2644008 37 100.0 37 ..................................... ATAGCGAATAGCCCAGTTCAAAAAATCATTCATCGTT 2643934 37 100.0 35 ..................................... AGCACCCGCATCATATCAAACTCGCAGGAGATGCG 2643862 37 100.0 37 ..................................... CATCATAAATGCCTGTCTTGGGATCATAGGTAAACTC 2643788 37 100.0 36 ..................................... TTGACGAATCCAGACGGGACAAAACAGGCGGGAGCG 2643715 37 100.0 35 ..................................... TCGTTATCGAGCTGGGTGTCACAGAAGAGCAGGAA 2643643 37 100.0 35 ..................................... CGCATACCCTTGCGCTAGATATTGCCAGGCTTCAT 2643571 37 100.0 37 ..................................... CTTATCCATCTTGTCGGAGAAGTGGAATACAGGCGCC 2643497 37 100.0 35 ..................................... ACATAACCTGCCTCATCCACATTGATTAAATCGTA 2643425 37 100.0 38 ..................................... GCTCTTTTAATCCGAGTGCTTCCCAGAGTGGAACATCG 2643350 37 100.0 39 ..................................... CGGATCTACAATAACTTTGCCGCAGCCGCTAGCATTGCC 2643274 37 100.0 39 ..................................... CGGATCTACAATAACTTTGCCGCAGCCGCTAGCATTGCC 2643198 37 100.0 35 ..................................... TGTGAGCTCGATTGGCAGCAGTGCAGTTTTTTGGT 2643126 37 100.0 36 ..................................... ATTCCAGTAACGCCCAATCAATTGAGGGGTCACACC 2643053 37 100.0 35 ..................................... TAGTCCCTGAGTACCTGCTCACGCGAAACTGAAGC 2642981 37 100.0 39 ..................................... AAGAGCAGCATCCCGGCATCTATTGGGCAACGCTCTTCC 2642905 37 100.0 38 ..................................... GGTGAAATCGACCTCACCACCCTTCACCCCAAGCCAGA 2642830 37 91.9 0 .............................GG..C... | A [2642803] ========== ====== ====== ====== ===================================== ======================================= ================== 44 37 99.8 36 GTCTGAAGAGGTAAGCTCCCGCCTGAGGGATTGGAAC # Left flank : TGTCGGTGTCGCTTGTCTTGCCAACGTCATGGTGCATCTCCTCTTTTTGCTTAGATACCATTCCTCCTTCTCTTTTCAGCCTATCCCTCCCTGACAAAAGAGGGCTAAGTACAATCACACAACTTTTTTGGCATTGAGTGCCCTTGATAAACAGGATTCATCCCGAAAACTTTGCGTGATTGTACTTAGTAGTTGCAAAAGCAGGCTATTTTTCGGACTAAAGAAATTACTGCTTGCGAATATAAGTTATGCAAGATATACTACAAAAAGCAGGGTAATTTACCATGTTGCTCGCACCTTCTGAAACACCATGATACATCTCGCGGGAACCACATGCGCCCACGGTCTTGAGCTCAGGTTACCGCAAGGCTCTACAAGCCATCTGAGTACCTTTCCAACCAAAAAACGCCTGAAATTAGCTTCCAAAAACTCGCCAAAAAGTGAGGTTTCCGCAAATGGCATCGCCACTCCGCCTCCCAGGCCATGCGGGAACCCCATCA # Right flank : TAAATCATAGGTAGAAGTCCTCTATTGATGGAAATGGCTCGTTGCAGCGCCCGTACATTAATAATGAGATAGATCAAGGTATTGAGATTGGCAATCGAACGCCGGTTGCGGAGCCGGGGTCGTTCAATGCCCAGCTCTTTGGCCTGACTGTTGATGCGTTCGCAGCTCGTGCGTTGCGTGTACACAGCCTTGTAGAGCGGGCTGCTCCGATCTAGCAGGACTCTCATGAGGCCACCAGCCTCCCAGTTAGGATCTTTGTGGCATCCTTGCCCATGGTTGGATGAGAGCCGTTCACAGGCCTCTCCAGTCGGCGTGGGGAAGAGTAGGGGGCAGCCGAAACGCTGAGCACGATAGCCGTTGGTATGCTGAAACCCAAAGCGAGGCGTCATGCGCAACCCTTTGGCACATCGAGGCACAGCGTCAGGATCACGTACCATCTCAGGATGGCCATGTCCATTCTTGGGAATAGCTCCAATGCCCCCATGACGAGCGGCAGCTTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAAGAGGTAAGCTCCCGCCTGAGGGATTGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //