Array 1 25-1561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPL010000024.1 Listeria booriae strain FSL L7-1681 NODE_24_length_11090_cov_24.995642, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 25 30 100.0 34 .............................. AAACTTTTATATTATAATTAGTTTAGGTGTTTTT 89 30 100.0 36 .............................. TATGAAAATAACCTCATTTCGTTTGTTGTTTTTACT 155 30 100.0 35 .............................. GCATATTTATCGTTTTGATTATGCACAACAGGTGC 220 30 100.0 36 .............................. CTCGTAAATCCTATTGCCGTTTTTATCACTTATTCC 286 30 100.0 35 .............................. ATTTTTTTGCTACACATCTTCATATACCGAAGGAC 351 30 100.0 34 .............................. TCGCGCAATTCTGCTGATGTTTTGTATCCTTCCG 415 30 100.0 37 .............................. TTGTCTTCGCTGTTGCAGTGTTGTTTGGTATCTTTGC 482 30 100.0 38 .............................. TCAAAATACGCTGTATCATCTGTTGTTTCGTCCGCGTC 550 30 100.0 34 .............................. TACTTAGGACTGCTAGCAAAGAAATACCATCCGT 614 30 100.0 36 .............................. ATAAACTCTACTGCTTCATCACTGCCGAAAGTTGTT 680 30 100.0 36 .............................. CATGTGGAATACCAGTTGGATTGATGGCAATATCGG 746 30 100.0 36 .............................. CTGTCTGATGGCGATTTTTATGGCGTGGCCGTCGCT 812 30 100.0 35 .............................. TTGTTTTCCGGCTACGGAAATTCCGGTTCCGGAAA 877 30 100.0 34 .............................. TCGCGAGCTTTAGCTGAATTTTTCACCACTTTTG 941 30 100.0 34 .............................. TTTAGTATGGAGTGGATGGAAACAAAAAATAAAA 1005 30 100.0 36 .............................. TCATAAAAGCCGCGCTGTATTCTTCGAATGTTTTTC 1071 30 100.0 36 .............................. ATATAATCCTTCATGTTGAAACGTTTTGTGGTCAGC 1137 30 100.0 36 .............................. ATATTTTGTTGTATAATGTACATGTAGCATTTATAA 1203 30 100.0 36 .............................. CGAAACGCCAATAAAATTGATCGTCCTCAAAGTATA 1269 30 100.0 37 .............................. AAATTCGAAGATATCGATACGAGCTAAACTAATCTAA 1336 30 100.0 36 .............................. TACAAAATCGTTCTATACTTGCTATTCAGCAGCATT 1402 30 100.0 36 .............................. ATCATTGCTCGACCGCCGGGAGAGGTCGTGTCTAGC 1468 30 100.0 34 .............................. ATCTTTCCTTAGTTAGGATCGGTGCTGCCGTTCG 1532 30 80.0 0 .......C.C.....C.A.....CA..... | ========== ====== ====== ====== ============================== ====================================== ================== 24 30 99.2 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGAGTAGGCGTTGATGGGGTACCTG # Right flank : TCAATCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCTGTCTACCAAGCAATGTTCGTAGCCAGTATACGCTACTTTCCAGCTCTCATAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCGCGTTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTAAGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACTTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGACCGATATGTTGGGGTGTATTCATCAGGCAAATGGCAGCGATCTCCCCAATGTCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGTATGAATAAATCATCATGTTTCTGAAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 348889-347093 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPL010000003.1 Listeria booriae strain FSL L7-1681 NODE_3_length_410717_cov_18.295259, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 348888 30 100.0 35 .............................. ACAGTGTTGTGTTGGCGTTTATCTATTAGGTTATA 348823 30 100.0 34 .............................. GACTTTGCTTCACTCGATTCTTTTCTTTTTCTTG 348759 30 100.0 36 .............................. ATACCATTACCTTATCATTACAATATCATTACATTC 348693 30 100.0 34 .............................. ACTTAACAGTTCCTGTGTATGATTTCCCATCTCT 348629 30 100.0 36 .............................. ACTTATAAAGAAGGCTATCTCGACGGATTTGATTAC 348563 30 100.0 37 .............................. TAGATATAGTGGTAGGACAATACAGAAAGGAGGAAAA 348496 30 100.0 35 .............................. GTAGATGCTGTTGTTCCTGCGCTGGAACACGACCA 348431 30 100.0 37 .............................. TGTTTAATGTCTTTCAATCCCAATTTTTCAATGCCGT 348364 30 100.0 37 .............................. ATCGTTTGGAAAGCAGGGCGTTTATGGTCACTAATCC 348297 30 100.0 37 .............................. ATCAGAGTTGTATTGTCTATTTTAATAATAGAATCGC 348230 30 100.0 35 .............................. ACATAGTCTTTTGTAGTCAAATTCATTTTTAAGAA 348165 30 100.0 36 .............................. TCGGCTAGCACAACGATGGTTCTTTTTAAGGTTGTT 348099 30 100.0 35 .............................. TCCACATAGGTATAGCGTCCGTCCATGGCAGGCTC 348034 30 100.0 35 .............................. GATGTCCAAACAGCAAAAACTAGCACAGGAGTTGC 347969 30 100.0 36 .............................. TTGCCTGTCTAGTCTGGCGTTGGCTTGCTGGTAGTG 347903 30 100.0 35 .............................. TCGTTCCAGCACTCGTCTACAACCATTGGATTTTC 347838 30 100.0 38 .............................. CGAATCAACAAACCTCCTACGAAACGTGCCAGTGCGTC 347770 30 100.0 36 .............................. TCGACATAGGTATAGCGGCCGTCCATGGCAGGCTCG 347704 30 100.0 36 .............................. GATACCCTTTGTTTCTTATTTTAATATTTTTTTATT 347638 30 100.0 39 .............................. CCTGTTCCCGCTGCAATGTCTAGTGTATTTTGTGATTCG 347569 30 100.0 37 .............................. TTCTTTTCTTCGTATTCTAATTTAGCATCTTCTTTTA 347502 30 100.0 36 .............................. AATTCCATCTTTACATTCCTCATTTCTCTGCAATTT 347436 30 100.0 36 .............................. CACGCACGTTGTATCCTTAATCGAAGCAAAAGCAGA 347370 30 100.0 36 .............................. AGAAGGGGCAAGACGTCTTGCCATCACATCTTCATA 347304 30 100.0 36 .............................. GTACTTATCGCAAATTTGGAAATGTGTTTGTCATTA 347238 30 100.0 37 .............................. GTTGCTCCAGATAGCACCACAGCAGCTGCAATACAAC 347171 30 93.3 20 ............A....A............ ATCCATTTCATGTAATCCTT Deletion [347122] 347121 29 73.3 0 TGC..............A....-.C..G.C | ========== ====== ====== ====== ============================== ======================================= ================== 28 30 98.8 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAAGCGGGTATAAGAATCCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTCACTAGATTTGAGATCGTTTTTGGAGGTTGGGTTGTAAGGTTCGGGAGCGGAAATTTAGTATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TAGATTGCCTACAGATGCAGTGTTTCTATCCATTTTTTTAGAATCAATTATCATTCAAAATCCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGTGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTTGATGTGCTTATCACGATGGTTGGTTATCCGACTGATGTGGAGGAGCTTTACTTGGCAGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAACTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGGAT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 64423-65639 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPL010000011.1 Listeria booriae strain FSL L7-1681 NODE_11_length_111202_cov_16.789831, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 64423 30 100.0 35 .............................. TCAGGCGTAATGGCCCACAAGTCACCATCTTTGTT 64488 30 100.0 36 .............................. TAATGCTATTTACTACTTTACTTCGGGACGCCTTCC 64554 30 100.0 36 .............................. AAGTCCCCAATCAGTATAAAGATTAATCAACTCTTC 64620 30 100.0 37 .............................. TTTTCAAAAGTTGCTTGTGTGCTTAGCTTCGGATTCG 64687 30 100.0 36 .............................. GCATTTCACTAATTTCTAAATCGTGCTTGTGCAGAT 64753 30 100.0 36 .............................. TGTTTTTTTTGCCTTCAGGAATAACGGACAGTCAGG 64819 30 100.0 36 .............................. CACTCTTATCTTGTATGAGTCTAGAAGATGTTTATC 64885 30 100.0 37 .............................. AGGAATTGACTTCACTGAAAACGGCAAAATTATCGTT 64952 30 100.0 38 .............................. AAAGTATATTAGCCAACTGTGCAGTAAAAATATGCTTG 65020 30 100.0 37 .............................. ATTGAAACAGAGGAGGGTTAAAATGGAAAAAATAACA 65087 30 100.0 36 .............................. TGGGCAACCAGCCCGAGTATATACTGAAAATGATAC 65153 30 96.7 36 ...............T.............. GAATTATTATCTTTTACATACACACAATGACAATCA 65219 30 96.7 34 ...............T.............. AAGCATTAAACAAGCAATACGGTAAATTAGTCGA 65283 30 100.0 34 .............................. TGCGTCACATTAAGTTTTAGCTTTAACCTATCAA 65347 30 100.0 37 .............................. GCAATTAAAACATTTTCTTTAGATGGGTCGCTTAAAG 65414 30 100.0 35 .............................. CAATTCGACATTGCTCCAGCTTTTAATGCTGCATT 65479 30 96.7 36 ...............T.............. AACATCATCGAATATCCAACGTTCGACATTTTCCCT 65545 30 93.3 35 .............C...........C.... CCGCGAATATTCGTCAAATGTATCAGCTGATTAAA 65610 30 76.7 0 .................C.A...CAC..TC | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 97.9 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCCGATATCGTTCTAATTGCCGTCGGATTCGCCGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTTGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAGGGGGTAGGATGATTTTCGAGGAGGTGAAAAAAATAAGTAGATGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTGAGAGGGTACCT # Right flank : CCCCAAATAAGGAGAGACACCAAATGACTATGAAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACCTACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACATATTTGAAGGAATACTTGTCGCGGTCATACACCGGAAAAATGACACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACATATTTTCTAGAGCAATACTTTGATTCTGTTATCGAGCTTCTTTAAAAAAACAACGATATAATCGCTTTATCCAAAGCGCAATCATGCTTGCCTTCTCGTAAAATACCTAAATAAAAGATGAATTACTATTAAAAACAACACACTCACCATGAAAACAACACTTGAAATCCAGCTCATAAAAAAGGATAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //