Array 1 237035-244386 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBJZ01000001.1 Pseudoclavibacter chungangensis strain DSM 23821 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 237035 29 100.0 32 ............................. TCTCTGGAGGAGCTATGACCATCAACATTCGC 237096 29 100.0 32 ............................. CTCACGCTCCGGGCGTGGACGTCGGGGTCGGC 237157 29 100.0 32 ............................. CGGCCGAGACCGCTATCGATCCCGGACCCGAC 237218 29 100.0 32 ............................. CCGTACTCGTCCGACGAGAACGTCGCGGCCGA 237279 29 96.6 32 ............................G CTCTCCTACCGACACGCCCGAGATCGAGGGGT 237340 29 100.0 32 ............................. CCCGCCGGCACGACGCAGTGCCGGCAGATCCA 237401 29 96.6 32 ............................G CCGGCCACTCGTGATCTCAGACGCTTCGTGCG 237462 29 96.6 32 ............................G TCCTGATCCGTGCTCCCGGCTGTGACACCAGC 237523 29 96.6 32 ............................G AGGCGATGCAGGAGGTCGCCGAGGGCGCTCTC 237584 29 100.0 32 ............................. GCTCACCTCACTAGCACCAGCCGCGAGAGCAA 237645 29 96.6 32 ............................G AACGCTCCCGCGGCCATGAGCACGACGGCGGC 237706 29 100.0 32 ............................. CGGACGCGCTCGCCCCGCTTATGCGCATCGTG 237767 29 100.0 32 ............................. CGGACGCGCTCGCCCCGCTTATGCGCATCGTG 237828 29 96.6 32 ............................T CAAGACCGAGTTCCCGGCCCACTGCAGGACCG 237889 29 100.0 32 ............................. CTGAGCATTTCGTCTTCCTCCTGTGTGCTGTC 237950 29 96.6 32 ............................G CGGCTGGAGACGGCTCGTGACTCGGCCGCTGA 238011 29 96.6 32 ............................G TTCATGACGCTCGAGGCCCGGAGCCGCCCGTT 238072 29 96.6 32 ............................G TAACGGCGTGACGTACGGGATCGCGGCCGCGG 238133 29 96.6 32 ............................G CCCGACCAGATCGCCGAGTACCGCGCGTTGCG 238194 29 100.0 32 ............................. CCGTCGGCCCGACATACACGGGCTCAGCACCG 238255 29 96.6 32 ............................G CAGGCCGCGGTCGCGCCCGTTAACTTCGTGAT 238316 29 96.6 32 ............................T CTGTGCCCGGATCGAGTCGAACGTCGTCGCAG 238377 29 100.0 32 ............................. AGCTACGGCTACATGGCGCCGTCCGTCACGCT 238438 29 100.0 32 ............................. TACGAGTTCAAGATGCTCGAGTCGATCCTGGG 238499 29 96.6 32 ............................G TACTACCCAATGAAGTACTACCCATTGAAGAA 238560 29 100.0 32 ............................. CGGATATCGCGCCCGACGATGACCTGCTCGGC 238621 29 100.0 32 ............................. CGGATATCGCGCCCGACGATGACCTGCTCGGC 238682 29 100.0 32 ............................. GGCGACGACGACGGGATCAGGTCGACCGTGAA 238743 29 100.0 32 ............................. GCGTCGCGCACCTCCGCGGTCTCGGGTGTCTC 238804 29 100.0 32 ............................. CCTACCCTAGCGAGCATCGCCAACGCCATGGG 238865 29 100.0 32 ............................. CTCACGCTCCGGGCGTGGACGTCGGGGTCGGC 238926 29 100.0 32 ............................. GAGCCGGTGGAGTCCGCGAAGCCCGCGTCCGC 238987 29 96.6 32 ............................G CCGATGATCACCGACGTCGGGTCGGCGTTCTC 239048 29 100.0 32 ............................. CACCGCGAGATGCAGAAGTGGCGTCGGCTCAT 239109 29 100.0 32 ............................. CCTGCTCGCGCAGCACCCGGAACAGCCGGTTC 239170 29 100.0 32 ............................. ACGGTCAACAGCGCGGGCGGGTCGTACGTGAC 239231 29 100.0 32 ............................. ATCGAGCGGGGCACAGATTGCCACCGCAATTC 239292 29 100.0 32 ............................. CAGCACAAGAACGTGCTCGGCCTGATCCGCGA 239353 29 96.6 32 ............................G TGGACTGACCTCGCGGGCAGTGGCCTCGCGGA 239414 29 100.0 32 ............................. CCGCCCACCGCCGACGTCACCGGCGACAGGAA 239475 29 96.6 32 ............................G CGGGTGCTCTCGTCGATGCCCCGGCCGGTGAC 239536 29 100.0 32 ............................. TCCGCCGCGACGACCTCGACCCTCGGCGACGC 239597 29 96.6 32 ............................G TACATGGACACGCTTGGGCTGACCCCGTCTAT 239658 29 96.6 32 ............................G GTGGCGGCGTGATGCACGAGACGCAGGAGGCC 239719 29 100.0 32 ............................. GAGGGTGCGTGGTTGTACCCGTCCGGCGTGAA 239780 29 100.0 32 ............................. CGCCGCGCGAGGATCGTGCGGAACGACTCCCC 239841 29 100.0 32 ............................. AAGGCCCGGCCCGGCGTGTACCCGGGCAGGAC 239902 29 100.0 32 ............................. CGGGGTTCCATCGGAAGGCGAGGTGGTCGCAC 239963 29 100.0 33 ............................. GCGGTGCTGGTCGAGTGGGACAAGGCCGCGGAG 240025 29 100.0 33 ............................. GGTCGAGATCTTGGGGATGTGGAAGTGTGCGCC 240087 29 100.0 32 ............................. GTGTCGAGGTCGTCGGTGGTGAGCGTGTCGGT 240148 29 96.6 32 ............................G CGACATGAGCGGCGCCGACGCATTGAACTGGT 240209 29 100.0 32 ............................. ACCGCCTCACCACCGAGACGAGCCCAGATCCC 240270 29 96.6 32 ............................G TCGGACGTGTCGGCGAACATGGTCGTCGGCCG 240331 29 96.6 32 ............................T CGGTTCGGCTTGATGTGGCGGCGGCCCCATCC 240392 29 96.6 32 ............................T CCACGGGAGGTGTCATGTCCGGAGCGGGATCG 240453 29 100.0 32 ............................. CCGTCAGCCCGTCCCCCTCGATCCCGAACCCG 240514 29 100.0 32 ............................. CTGTTCGTCCCGGGGTCGACCCGCGACGCGAT 240575 29 100.0 32 ............................. TCGAAGGCACCACTCGACACGACGAGCGTGTT 240636 29 100.0 32 ............................. CAGGACCCGCGGTTCCCCCGACTTCACGTCGC 240697 29 100.0 32 ............................. TCGGCCGGATGCTCTCGGTAGACCTGGACGGC 240758 29 100.0 32 ............................. ACCAGCAGCTCGAACGCGCTCAGATCACTGTC 240819 29 100.0 32 ............................. CCGACCTCATCGAACACGGCGTCGCCGTAGTC 240880 29 100.0 32 ............................. CTGCCCACCCTCTGAAAGGTAGTGGAGCATGA 240941 29 96.6 32 ............................G TACTACCCAATGAAGTACTACCCATAGAAGAA 241002 29 100.0 32 ............................. GACACGCTGTAGGTGCGCCCCTCAGACCAACG 241063 29 100.0 31 ............................. GCGGAGATCGGCGCGTACGAGAGCACGGACG 241123 29 96.6 32 ............................G CCGATCCGCGACGGCGAGACGAAGGCGGTCGC 241184 29 100.0 32 ............................. CCGCGCAGCGAGTCCGCGCCGATCCCGGCCGA 241245 29 100.0 32 ............................. GGACGGTGCTCACCCCACTTCGCGAGGCAGTA 241306 29 100.0 32 ............................. GCGTAGAACCGGTCTCGGTCTTGCGCGTGTCC 241367 29 100.0 32 ............................. TGGAGGGCGATGGCGACGGGTTCTTGGTCGCC 241428 29 96.6 32 ............................G GCGCGCGCCGCGACGGGACCGTCGAGCGATTT 241489 29 100.0 32 ............................. CTCACGCTCCGGGCGTGGACGTCGGGCAGCGC 241550 29 100.0 32 ............................. TCCGCCCGCAACCCCGACAACTCGCTCGCCAT 241611 29 96.6 33 ............................A CGCCAGCGAGATTCCCGCCATGAGCGCCGGGGT 241673 29 100.0 32 ............................. GCCGCCGCGGCGCCGGGGGCGTCATACTCGCC 241734 29 96.6 32 ............................T GCGGCCCTGCTCGAGCTCGGTAGCGAACCGAT 241795 29 96.6 33 ............................G CGGGCGGACGCGATCGTGCGAGCGATGGGCTTG 241857 29 100.0 32 ............................. GCATACACGGCGACGCCGACGAGGCAGAACAC 241918 29 100.0 32 ............................. ACGAGCGCCGCCCGCTCCAGCGCCCACACGGG 241979 29 100.0 32 ............................. AAGGGCATCTACAACGAGACGCGCGAGGAGAC 242040 29 96.6 32 ............................T CTCGCGCAGCTCGACGGGGCGACGATCAACGC 242101 29 100.0 32 ............................. GACGGCACGGGGTGGGTGCGGGAATCGTCGGG 242162 29 93.1 32 A...........................G GACGCGATCACGCAGGCCTGGGAACTCATCAA 242223 29 100.0 32 ............................. ATCAGCGGCCGCTACACGATCGCCAACGTCAT 242284 29 96.6 32 ............................T GAGTGAGCAAGCCCCGAGAATGGTGGGCTGGA 242345 29 96.6 32 ............................T GCGATCGGGGCGCTTCGGAACGTCACGCACGC 242406 29 96.6 32 ............................G TGCATCACCGGAGCGTCCGGGGTACCCGACAG 242467 29 100.0 32 ............................. AGATAGACGAACACAGATCGGGGAGGTAGGAC 242528 29 100.0 32 ............................. GCGTCGTGGTGGCCGTCGACGATGCGCGCGCA 242589 29 100.0 32 ............................. ACGGTCAACACGGCGGGCGGGTCGTACGTGGT 242650 29 100.0 32 ............................. AAGGTCGTGGGGCGATGGAAGGGGCGCGGATG 242711 29 96.6 32 ............................G GGACGAGCGTCGTGTCGGGGTCGAACGGCCAA 242772 29 96.6 32 ............................G TTCTTCGTCGCCTCGCACACCGGCCTGCCGTC 242833 29 100.0 32 ............................. CCGACTCGCACGGTCTTCGTCTGCATCGCGTT 242894 29 96.6 32 ............................G ACAGGACTCAAGGGCAAGGTCGACGGCGTCTA 242955 29 100.0 32 ............................. GGCAAGAACTGCACCGGGCGACGCCGATTCTG 243016 29 96.6 32 ............................G CCCGAGGCTCGCGCGTTCAAGCGGTGGATTAC 243077 29 100.0 32 ............................. CACGGCTCGCCGCCGATCGTGACGGTGCGGAC 243138 29 100.0 33 ............................. TAGTCCCGGCATCATCCCGCGCCGTCCCACGAG 243200 29 100.0 32 ............................. ACCGCCAGGCCGACGCGGGGCGAGAGCACGCC 243261 29 96.6 32 ............................G CACAAATGCGGCCCCTCGGCGGCGCCAGTTGC 243322 29 100.0 32 ............................. GACACCGAGCCTGATTCAGACAGAAACGCCCC 243383 29 100.0 32 ............................. GCGCCGTCACCGAGCCATCGCTTAGTGACGAG 243444 29 100.0 32 ............................. ATGCTCAGCATCCCTGACGGGTCGCTCTCCAA 243505 29 96.6 32 ............................G TACAGCATCACGGCGAAGACGATCGGCGTGAT 243566 29 100.0 32 ............................. ATCGCCGTGTTCAACCTCCGTGCAGTCACCCC 243627 29 96.6 32 ............................G ACCCTCTTCCTCTTCTCAGCCCCGGCAGTCGG 243688 29 100.0 32 ............................. CAGGTCGGCGCGATCGACGTCGGCCAGCTCAC 243749 29 96.6 32 ............................G GAGGCGACCGATGCCTGACCGTCTGTCCGATG 243810 29 100.0 32 ............................. GGCACCTCGTCCGTGCTCTCGTACGCGCCGAT 243871 29 96.6 32 ............................G ACGACCATGCTCGCCGCTGCACGGGCACGACC 243932 29 100.0 32 ............................. GAGCCGGCGGCGCTGGTTGCGGCGTGCTGGGC 243993 28 96.6 32 ....................-........ ACCAGGTCCTCCGCGACCCCCTCCGAGGCGCG 244053 29 93.1 32 .C..........................T CCGAGGTCTTTGACGATTGCGCGCGTCTCGTC 244114 29 96.6 33 ............................G CTCGGGACGTTCCTCGTCGGCCTCATTACGGGC 244176 29 96.6 32 ...T......................... ATCATCTAGCGCATCGAGAACGGCGCCCTGTA 244237 29 96.6 32 ....................C........ GCGAAGTCGCGCTCGGGTGGGAGTACGGCTGG 244298 29 82.8 27 .G..................A.C..T.T. GCTGCGCGCTCAACCCATCGCGCTCGG CGC [244320] 244357 29 69.0 0 ACA.C........G...C....C..A..A | A [244361] ========== ====== ====== ====== ============================= ================================= ================== 121 29 98.2 32 GTGCTCCCCGCCCACGCGGGGATGAGCCC # Left flank : GCCGCGTGCCCCGCCGGTCTCCGCGGACAGTTGACCAGGTGGTTGATGGAGATCGCGCCGGGTGTGTTCGTCGGCCGCGTCTCACGCCGAGTGCGCGAGCTGCTGTGGGCGCGGGTGGTGGAGCTGAGTCGTGACGGGAGGGCCATCATGGTGTTCTCCGCTCGCAATGAACAGCGTCTCGACTTTCTCGTCCATCGCAGCGAGTGGGTCCCCGTGGAACGCGACGGGTTGCAGCTCATTCTTCGTCCGTCGCTGGACGGGCCGAAGCGTGCCGTGGGCAGGGGCGTGGTCGCCGGTGGGGTGGAGGGGGATGCCGCTGCGTCGTCCGCGAACTCCGTCGACGAGAATCCTCGTCGTGGTTGGAGCAGGGCGTCTCAACGGCGCATCGCGGCGCGGCGCCGAGGCGGCCGACGAGCGGAGGATTCGTGAGCCGCCTGCGGGGCCCGCGGAAAGTGATGCTGGAACCAGGATTCGGTACGATAAACACCTGATCAAGAAGT # Right flank : ACGATCCGGTAGCGGGCCGGACCGCTCGCAACCGAGCGCTCGGTATCACGCGCCGGTCCGTCACCGGTGGAGTGCGACGGGACCACCTCGCGGAGGCTACTCGGCGATCACTACCGGCTCGGACTGCAGCCGACCGGGCATCCTTCGCGAGCTCCTGGGCGCGGGAGCGGGCGATGCCGAGGGCGGCGGCGAGCCTGGCGTCGCGCTCGAAGCGGTCGAGTGCTTCCCGCGACTCCGTCCACTGGCGTGTGGCCTCGTCCGGGATCCGCACGCGCATGTGGGGGACGAGCTCGCCGTCGTCGACGTCGAGGAACGCGGCCATGCACTCGCGCGCCATCGGCTCTACGACGTCCCAGCGGCGCGCCCGGGTGGTCTGTCGAATGCCGGGATCTCGATGGTCCGCCATCGCCCCTCCCGGGAGGTGATGACGCCAAACTCGACGGGCGCATGTCCTTCACGTCCGCCACTCCTTCTTGGCCTCGTCCCGGAGCCGCCCGGAC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 52477-52626 **** Predicted by CRISPRDetect 2.4 *** >NZ_WBJZ01000008.1 Pseudoclavibacter chungangensis strain DSM 23821 Scaffold8, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 52477 28 100.0 33 ............................ GGGCCCGGCAGGACATTCCTGCCGGGCCCTTTC 52538 28 100.0 33 ............................ ACTCAAGCGTTTCGTCGGTGAAGTCCCACGCGC 52599 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GCATCCACTGCGTGCGCGTGGAGGGACT # Left flank : GCGGTCCGAGAGCTCGCCCGTCACGAGCGGACGGTTCTCCGTGCGCTTCATGAGGCGGTCGATGTCGCGGTCGATGTAGCAGTTGAACGCGTTCGCGCTGCCGGCCGCGAGTGCTCCGCCGAAGACGACGCCGGCCAGCAGCCACAGGTCGGGGATGCCGCGCTGGGCGAGGATCATGGTGGGCGCCGTCGTGACGAGCAGCAGCTCGATGATGCGTGGCTTCGTGAGCGCGATGTACGCGCGAAGACGGCGTGCTGCACGCGGACGTTCGACGGCGCGGTGAGTCCCGAGCACTTCATCTACCGACAACCGAAAACCGTCCCGTCCTGTACTCGTAGGCTCCCCCGATCCTACTCCATCCGCTCCGCGCATCGGGCTCGCCCGCCCGTCGATCGGCTCGACGTCGTCGCTGCGCTCGAGTGGGTCCTCCGGTGAGCCGTGTCGTGTTCGGCACAGTGCACACGGTCGTCGTGCGCCTCGTCACCGGAGGACCCGAGGGT # Right flank : TGGCACTACGCTTGGCCTCGATCCATGTCGGTCGAACCTCGAAGGATGCAGCGTGACTGGAATTCACTGGTCGGAGTCGGATGCACGGGCCGCGGACACGGCGCGCCTGTTGGCGGCGGATGCCGTCGAGAAGGCGAAGGGCGGCCACCCGGGCACGGCGATGAGCCTGGCGCCCGTCGCGACGCTCCTGTATCAGCACGTCTTGCGCGTCGATCCCTCGGACCCGCACTGGATCGGTCGCGACCGGTTCATCCTGTCGGCGGGCCACTCGTCGCTCACGCAGTACACGCAGCTGTTCCTCGGCGGCTTCGGCCTCGAGCTCGAGGACCTCGAGCAGCTCCGCCAGTGGGGCTCGAAGACGCCCGGGCACCCCGAGTACGGCCACACGGACCACGTCGAGATGACGACCGGCCCGCTCGGTCAGGGCCTCGCGTCGGCCGTCGGCTTCGCGTACGCGCAGCGCTACGAGCGCGGTCTGTTCGACCCCGAGGCGCCCGCGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCCACTGCGTGCGCGTGGAGGGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //