Array 1 16747-19536 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOW01000070.1 Vibrio cholerae strain A12JL36W67 NODE_85_length_80082_cov_28.603020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16747 28 100.0 32 ............................ AGTCTTTAAGCCCTTTCAGTGCTCGATTCTGA 16807 28 100.0 32 ............................ TCCACCAGTTTGGCGACTGAGGTTTGCTCTTG 16867 28 100.0 32 ............................ TTGAGACCTAACGCGGAGTAGCCAGAAGCTAA 16927 28 100.0 32 ............................ GTTCAGCCAGAAGTCGCCGGGGCTGATACTTC 16987 28 100.0 32 ............................ AGCAAGAACGCCAGTCCCAGCGGCATCACCAC 17047 28 100.0 32 ............................ TGAGCGCGTGATTTGTCGGCTAGACAAACCTC 17107 28 100.0 32 ............................ TAATAAAACATCAGCTTCATAATGTTGCTTTA 17167 28 100.0 32 ............................ TGAGCGCGCCAGTGCGGCGGCAAGCGCTTCAT 17227 28 100.0 32 ............................ GCGTTGATTACACGCCAATTTGTTCTTGAGCT 17287 28 100.0 32 ............................ CGATCCTCCTCTCGCGCTTGCTCCAACTTCTC 17347 28 100.0 32 ............................ AGAAAGAGAAAAGGCATGCAAAGGTATCAATA 17407 28 100.0 32 ............................ ATCAGCACATCATTGGCTTCATCGCTGTAGGC 17467 28 100.0 32 ............................ GCCAAGAAGCTCGAACAAGAAGCCAGCAACGC 17527 28 100.0 32 ............................ TGCCGTCGAAGGAAGTGATCAGCAAACAGTGG 17587 28 100.0 32 ............................ CTGATGCCATTGTTGCTGCTTTCGATTCAAAG 17647 28 100.0 32 ............................ GGAGCAAGAAATGAGTAAGTCTTTTCTGGCAG 17707 28 100.0 32 ............................ TAGCGAAAGTGGAAAAGAAAGTGGATGACTTA 17767 28 100.0 32 ............................ GACTTGCCCCGCTTGAGTTCTTGAGTGTTAAC 17827 28 100.0 32 ............................ TCTGAATACACCTGCCCTAGCGCCCTTGCATA 17887 28 100.0 32 ............................ TTGCGTAGCTACGTTAAGATGAACGATTGGAT 17947 28 100.0 33 ............................ ATCACGCACAAACGCTTTGCGGCCTGAAATCTT 18008 28 100.0 32 ............................ AGAAGACTACACGCTTATTGAGCCAGTGGGTG 18068 28 96.4 32 .........T.................. GTCAACGGCTTTTTGAATGTCCATAATTGGCC 18128 28 100.0 32 ............................ TCTAGTGTTATCAAAACCAAACACCTCCCCGA 18188 28 100.0 32 ............................ ATGTTGGCCGCGCCGATGGCATGCAAAAGCTC 18248 28 100.0 32 ............................ TGTATAAGCACCTTCGTTAATCGGTTGTTTGT 18308 28 100.0 32 ............................ TGCCAACGTGCCACCCGCATCGAGCGTGATGG 18368 28 100.0 32 ............................ CCACCAGTTTGGCGACTGAGGTTTGCTCTTGC 18428 28 100.0 32 ............................ GATGCAATAGGGGACCACAAGTGCATGTTTAG 18488 28 100.0 32 ............................ TGTTGGGAATATCAGTCTCCCCCCTTCCATCC 18548 28 100.0 32 ............................ ACGGAGCAAGCAAACAGAAAAAATCACTGCTT 18608 28 96.4 33 ...........T................ ATTGCTTTTGCAGCCCAATAAACAAAACCGTGA 18669 28 96.4 32 ...........T................ AAGATGGTGATAGACAAGCATTTCCCTAATGC 18729 28 96.4 32 ...........T................ CCAAACACCCTCGTTGGTTTGCTCCCACATCA 18789 28 96.4 32 ...........T................ AATACTGAAATCACCATAAGGCGTTTTTAAAA 18849 28 96.4 32 ...........T................ GCGCCGCACGCTCACGAAGACCACGGCTAATG 18909 28 96.4 32 ...........T................ ACCATGATTGCAGCGTTCAATTGCGCCAACCT 18969 28 96.4 32 ...........T................ TAAACGAGCTGTCACAGGCTGAGCAGGTTAAG 19029 28 96.4 32 ...........T................ TTGCGGGTAACACTCGCAAAGCCACGGTTTTT 19089 28 96.4 32 ...........T................ GTCAGAGTTAAACGATATTGACGCAGATCCGT 19149 28 96.4 32 ...........T................ TATCATAAAATCGCCACGACTTGCGCCGCTAT 19209 28 96.4 32 ...........T................ AAATATACTGTGCGTTCTTATAACCTCTAGCG 19269 28 96.4 32 ...........T................ TATCACAATAGAATCCGGCGCTTCATTGCCGA 19329 28 100.0 32 ............................ GATCTTGGATCGGCTGCCGACATCGCAAGTAA 19389 28 100.0 32 ............................ CGACAAGGGTAAGCCAGACGAAAAAGGGCAAA 19449 28 96.4 32 ...........T................ CATAAATTCAAGTTGCCGCGCTTTGTCTGGTA 19509 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================= ================== 47 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCCACAAAGCACATCACAAGATGGGAGCTTTGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCGACCGTACCGCATTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCCTTTATTTTTGATCTTTAAAAATACGTTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGGAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 9780-6209 **** Predicted by CRISPRDetect 2.4 *** >NZ_VIOW01000122.1 Vibrio cholerae strain A12JL36W67 NODE_178_length_11383_cov_20.152771, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9779 28 100.0 32 ............................ ATAATGAGAGCGGCTTTAACCCTTTGGCCGTG 9719 28 100.0 32 ............................ TGTGATTATACTGCTAGCATAACTTAGCGTAC 9659 28 100.0 32 ............................ GATTAGCGCGCTTTTGTGCCAACGCTGACAAC 9599 28 100.0 32 ............................ TTGCGATCACCGCTTTCATCTTTAGCGCTGCT 9539 28 100.0 32 ............................ AGACGCATCACCGCTGGCACCGGACGTAACAA 9479 28 100.0 32 ............................ CGCGAGTGCGCCAGCACTCGCTATCTCCCTGA 9419 28 100.0 32 ............................ AGTTGGTATTTATGAGTGTGGTAACAATGTAG 9359 28 100.0 32 ............................ GATACTGTCCGCTACTTCCGCTGATATAAATG 9299 28 100.0 33 ............................ GTGCAAGAAAAGCAAGAAGACGGGCGAATATCT 9238 28 100.0 32 ............................ ATCGCGTGTAACTCTTTCGGCGTGGCCGTCTG 9178 28 100.0 32 ............................ TGATACGCCAAACAAGCAATGGGTAAACAAAC 9118 28 100.0 32 ............................ GCGACCCCTACCGCCACCTTTTTCAATGTAGA 9058 28 100.0 32 ............................ AAACCGAAGTCTACGATGTGATCGGTGACTTC 8998 28 100.0 32 ............................ CATCCAAGCGTCTGCACCTTCTGCACCTGGCA 8938 28 100.0 32 ............................ TTTGGCAATCGCATTAACTCGATTACCTCACT 8878 28 100.0 32 ............................ GCCACCCTTTACTGCCCTGTCGATAGCTGACT 8818 28 100.0 32 ............................ TTTTGGGAAGTAATATTGCAAACCGCCCGTGT 8758 28 100.0 32 ............................ AAGCCGCAAGAGAACAGAAACGCAAGACCAAG 8698 28 100.0 32 ............................ AGTTCAATATAACTTTGATGGAGGGGCGGCGG 8638 28 100.0 32 ............................ AACTCCTCTGCGATGTAGCAGCAATCACCCCA 8578 28 100.0 32 ............................ ATAAATTCCCGCCTTTTTTACAAAAGAATCCA 8518 28 100.0 33 ............................ TAGATTTGATTTAATAATTCGTGGGCGTTTAAT 8457 28 100.0 32 ............................ AGTGTGAATAACGCCCCAGCTAATGGGCTCAC 8397 28 100.0 32 ............................ AAGACTGTTTTAGGCGTTGAGTTCATCATGTC 8337 28 100.0 32 ............................ AAATCGCAACAGCTGACCTTTCTCAACCTTTG 8277 28 100.0 32 ............................ GTCCGGAAAACTTCCAGATACGCGCGGAATGG 8217 28 100.0 32 ............................ ACAACTCAGGCTGATGCATCAAACGGTAACGG 8157 28 100.0 32 ............................ AAGTTACATAAAGTTGAGAGATTGGGGCAAAC 8097 28 100.0 32 ............................ AGACGCCAGCAGTAAAACAGGCCGAAGATATA 8037 28 100.0 32 ............................ TCACTTAACGCCGCCGTGAATCCGCCCTGCTC 7977 28 100.0 32 ............................ AAACTGGGGGGTAGATAAGCAGATTATAACTG 7917 28 100.0 32 ............................ TTAACTTAACCGTTTTAACAATGGTTATCGGT 7857 28 100.0 32 ............................ AATGGATGCTGACAACGGGGGCTACAAATACG 7797 28 100.0 32 ............................ TACACCAGCACCAACACCAGCACCAACACCAA 7737 28 100.0 32 ............................ TTATTCACACCTCTACTTGCCATTACTTAACC 7677 28 100.0 32 ............................ TCCCATAGTTGCAGATCATATTCATTAGGTTC 7617 28 100.0 32 ............................ AAGCTAGAAACGGGCAGAAAAGGCGCGCGAGT 7557 28 100.0 32 ............................ ATTAATCGCCGACATTGGCAATCCCAAATGAC 7497 28 100.0 32 ............................ TTACAGTGGGTTAACGATTGCTTTGACTGGAG 7437 28 100.0 32 ............................ TGCATCACTGTTGAGCGATAGGTTTTTCATGA 7377 28 100.0 32 ............................ ACTTAAAACCACGCCCGAGATAGAGCCGATTA 7317 28 100.0 32 ............................ TATCTCGGTGTAAACCTTATTTTCGACCGCAT 7257 28 100.0 32 ............................ TTTAAACTCTTCATTACCAGTAAGGAATGCGA 7197 28 100.0 32 ............................ AAATGATGAGAGAGCCGCAAGAAGAAGCCGTA 7137 28 100.0 32 ............................ CTACGTCCAAGCAAATAACTTGCAAGTGATGA 7077 28 100.0 32 ............................ TATTTCCACGATAGAGCCCGCTGTGTTGCTCT 7017 28 100.0 32 ............................ TAACGTTGATGTAGTATCTAACAGAAATTGCA 6957 28 100.0 32 ............................ TTAGTTGTGCAAGGTAAGGCTGGGGCATTCAC 6897 28 100.0 32 ............................ TAGAAGCTTTCCGTTTCCTAGAAAATTAATAG 6837 28 100.0 32 ............................ TTTCATTTCTTACTGGCTGCGGCCTTGTGCCT 6777 28 100.0 33 ............................ ACGGTGAAGCTGAATCAAATTTGTAGGCTTGAT 6716 28 100.0 32 ............................ GTGACGCCGTTAATGTTCGTTCCGGTGTTCTC 6656 28 100.0 32 ............................ AGAATATAAGAAGGTGGGGGTAAAATGGGCTG 6596 28 100.0 32 ............................ ATTTGTTCAGCTATTGTGTAGCCCTTATCTCT 6536 28 100.0 32 ............................ AAACCGATCAGACTTTTACCAGCAAAGCATTC 6476 28 100.0 32 ............................ GCGCAAGAACTCGACGAGTTGGCGCGTTCGGT 6416 28 100.0 32 ............................ AGCAATCTTATGGTGAGGCTCGCCCAGCCAAA 6356 28 100.0 32 ............................ TTCGAAAAGGATCTCAGGTTTATATTGAAGGC 6296 28 100.0 32 ............................ TCATGAACTTCTAACGTGCCATCGGTCAGCAT 6236 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 60 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAGTTTCAAGGGGTTAAATTGTGGATAGAAAAGAATTTTTAGAGTTATCAGCAGAACTTGCAAAGCCAATCAATTTTGACGAACTGGTTGCCTCGGGTGCTCTCATTCAAAAGGGTAAGTCTTATTACATTGGCAATATAGAGTTACTACCAAAATATGTTAGTCGTAAGATAAAGTCCACGGAGCAAAACCGGAACGGGGTTAAAGTTACTTTTTATAAGTAGCCATAAACATAACAAATTGTTCAAGAGGGATTCAGCACGCGTGGCATTTTGGGTATGCGTTGGCTTTAGTGATTCAGGTGGTATGCAGTAACATCGGTATTGCGTGCTTCACCCCTTAACAAGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAGTTTTAAGTTATTGATTTATATTGATAATAAAACCAGTAAAAAATAAAAGGTTATTTTGGGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTTCGGTTGTTGTGTTTGAGTTTAGTGTTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTATGTGTAATTCAGTCAAAGAGAACTACATATGAATCATCTAGCGATGGCTGTCGTAATAAAGAATAACCTTGTTTTGGTACAAAAACGGTTCAGAAAAAATACTGGGATGATTTTTGAGTTTCCGGGTGGTTCTATTGATGCCGGTGAGTCAGGAGAACAAGCAGCTATTCGTGAACTCTGGGAGGAAACTGGGCTGAGAAATTTAAAGCTCATTGGCACTCATAAGTCCATCAACGAGAATGGCGGCGATATTTATCATGTTGTTTTCAGCGCTTCGATGGACGCAGAGCCTAAAGAGATCGAACCTTACCGACAACAAACGTTTTATTGGTTTGAGGCTTCCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //