Array 1 83797-85778 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFR01000016.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 04-0604 NODE_16_length_104078_cov_3.10387, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83797 29 100.0 32 ............................. GTCACCTAGTGCCTCCGATAAAACCCACATAT 83858 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 83919 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 83980 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 84041 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 84102 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 84163 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 84224 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 84285 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 84346 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 84407 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 84468 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 84529 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 84590 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 84651 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 84712 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 84773 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 84834 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 84895 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 84956 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 85018 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 85079 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 85140 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 85201 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 85262 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 85324 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 85385 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 85446 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 85507 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 85568 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 85629 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 85690 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 85751 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 102286-104022 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFR01000016.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 04-0604 NODE_16_length_104078_cov_3.10387, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102286 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 102347 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 102408 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 102469 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 102530 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 102591 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 102652 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 102713 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 102774 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 102835 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 102896 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 102957 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 103018 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 103079 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 103140 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 103201 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 103262 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 103323 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 103384 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 103445 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 103506 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 103567 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 103628 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 103689 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 103750 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 103811 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 103872 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 103933 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 103994 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TGGATAAAACGGTGTTCATATTTATTGGTGCGGTGTTCCCCGCGCCAGCGGGGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 54895-54682 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFR01000035.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 04-0604 NODE_35_length_54946_cov_3.11462, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 54894 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 54833 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 54772 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 54711 29 93.1 0 A...........T................ | A [54684] ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGCCAGCGGGGATAAACCGCGGCCTTTGCCCCCAGGAAACGATGATGACC # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 738-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYFR01000084.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 04-0604 NODE_84_length_780_cov_2.2785, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 737 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 676 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 615 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 554 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 493 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 432 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 371 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 310 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 249 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 188 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 127 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGGATAAACCGAAATTAGATGATCTGGACAACTGCCCGCAAT # Right flank : GGAATTGTTGCTACGACTAAACAGGGAGGGAGCGTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //