Array 1 1018052-1019079 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP015819.1 Spiroplasma clarkii strain CN-5 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
   1018052	    36	  91.7	    29	....T.....TG........................	AAATAGTTAGAAAGGAGAAACTACAATGG  	
   1018117	    36	  94.4	    31	AG..................................	TGAGCGACTAAGCTGGAAGTTGAGGATGGAT	
   1018184	    36	 100.0	    30	....................................	TTGTAGTAAACTCCTCATATTCGACCATGA 	
   1018250	    36	 100.0	    30	....................................	TCTTTTCTCGGTTATATGGCCCTAAGGCCA 	
   1018316	    36	 100.0	    30	....................................	GGACTTGACCCATCACTTCGCTTAAACTCA 	
   1018382	    36	 100.0	    30	....................................	TGCACTTGTGTTTAATGCAAGTTTTAATGA 	
   1018448	    36	 100.0	    31	....................................	TTTGCTGAAATTTGGATTTTTGATTTTAAAG	
   1018515	    36	 100.0	    30	....................................	GCAATTATGAACAAGGTGAGGGAGTGTATG 	
   1018581	    36	 100.0	    30	....................................	GATGGTAAGGAAGATTTTTATAGATCATCA 	
   1018647	    36	 100.0	    31	....................................	TAGACTTAACAGGTACCTTTGGTAGTTTAAA	
   1018714	    36	 100.0	    30	....................................	CTTTCTATAATAGTCTAGTACAAACTCAGC 	
   1018780	    36	 100.0	    30	....................................	ATGAATGAAGTATGATTAACTACTTAAGTG 	
   1018846	    36	 100.0	    30	....................................	TTCTTTTCTTTTCTCGGAAATGGTGCCTTA 	
   1018912	    36	 100.0	    30	....................................	TCCTGGCAAATTGAGCAGACAAAGCATTTA 	
   1018978	    36	 100.0	    30	....................................	GCACTTGAGCACAATTGAATTTGATAAAAC 	
   1019044	    36	 100.0	     0	....................................	|                              	
==========	======	======	======	====================================	===============================	==================
        16	    36	  99.1	    30	GTCGCCTATTCCTTAGATATGTCAGATAACTAAAAC	                               	       

# Left flank :   AGTTTTCAATTTTCTTTTCCACAACCAACTTTCAGAGTTGCTCTTTTGATAGTTTTGCAATTTAATTTGATTTTCAAAAATTGTTAATGGTTTTCAGTGATTGTGAAAGGACATTATTAAACCATTGGGTTCATACTTATCATCACAAATTATTAAATAAACATTGTTTTCAACAAGTTTAGATAAAACTTGTGTTGTTAAAGTAGTGTAATTATTTTCTAAAACAACACAATTTAAGTCATTCATTGCAAAATAAAGTTCCTTCTTTGCTTTTAGGTTTGTCACCATTAACAAGCCATTTTTTAGAGAAAGTTTGTCATAATTAGTAATTAATAATGTCTTCCATGACATTTAAGTACCTTCTTTCATTTAAATTACTTAGGTTTTCACCTATTTACACTATAACAAAAAAAATAAACTTATAAGTTTATTTCTAAAATCTTGATTACTGGTTTTAATTTAAAGTAAATTGTTTATTGATCTCTAGTAATTAAAATTTT
# Right flank :  CCTTAAAATCTTAGTCTATCAATGAATAACCAAGGATGCTAATATTTAGAATTGAAATTTGATTAGATAATTGAGATGTTGTAGCTCGAAAATTTTGTTCTTTAAAAATTTCTTTGTTTTTATTTTCATCAGATATAAAAGTTGTATTTATCTTGTGAACATAGCTAGTATCTCCCTTTTTTCCTCTCAATACTTTATACTCAATTTCACTATGTTTATTGATATATGAAAATGTGGTATTTTTAACAAGCAAAACTTCACCACCCTTAAGACTTAAGATACTTTTATCTTTAAAAATATCAACTTTTTTAACTCACTGTGGCTTTGCCTTTTGCTCTAATTTATTCAACTTCAGGCCATAATAAATAGTACTCTCTCAAATATCACCATTTTTACTTGTAAAGTATTTTTCACTATTAAATTTACCTGTTTTTTTGTCAATTGCTACATTTTTTCCTTTAATCAATTGGCTATCTGTAACTGCACCTTTTAATTTTTAT

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCCTATTCCTTAGATATGTCAGATAACTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.89%AT]
# 	Reference repeat match prediction:         F [matched GTCGTCTATTCCTTAGATATGTCAGATAACTAAAAC with 98% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [5-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.41   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//