Array 1 321455-320834 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPI010000001.1 Listeria booriae strain FSL L7-1698 NODE_1_length_872085_cov_23.273094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 321454 29 80.0 37 G.C..G-.....T.A............... GAACGTCGCTCGTAATTGGGGTTATATCAAAGAACAA 321388 29 80.0 34 G.C..G-.....T.A............... CCGTGGAAACATAGTATTTTTCACCTGCATCAAC 321325 30 100.0 35 .............................. TAAGTAAGCACTATAAAAACGTTAGACATTTCGGG 321260 30 100.0 34 .............................. TTTGGACTATGAGAAAATTGAAGATGTAAAACGA 321196 30 100.0 36 .............................. AATCCCATTATCCCAATGTGTTATTTCGTTTACCAA 321130 30 100.0 42 .............................. AAATGATTCATTAACTTCGTTATGAAGAATACTTCTTAATCC 321058 30 100.0 34 .............................. GTGGAGAAAATGAAAGTTAAAACGGTGATAAAAA 320994 30 100.0 36 .............................. ATTGGTGCATTGTGACCACATCAGAGCTAAAACGGA 320928 30 100.0 35 .............................. CAGTTTAAAATTTGCTGTAGTAGCACGATACCAAG 320863 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 10 30 96.0 36 ATTTACATTTCACATTACTTAGATAAAAAC # Left flank : CCAGCACCGCAATGTTCAGCGCCTTGCCCTCTTCGGCGATTTGTTTCGCAAGATTCGGAGAAGAAGTGGTCATATCAATAGCAATCACTCCCGAACGAAGCGTAGTCAACAGCCCGTCCTCCGCCAAGTAAAGCTCCTCCACATCTGTCGGATACCCAACCATCGTGATAAGCACATCAACCTGAGGCGCAAAATCCTGCGGTGTCTCATGCCAGATTGCCCCCTCTTGAATCACGCTTTCCGCCTTACTTTTCGTCCGCGTATAAATATGTACCTCAAACCCCGCCGCCATCAAATTCCGCACCATACTAGCACCCATAACCCCAACACCAATAAACCCAATTTTCTTCATCGCAAAAACTCCTCCTTCTATACAGTTCGCTTCTAAACAAAGTGTACATCTGGGGGAGTAAAAATGCAAATGGAGTTGGTTGGAGGCTGTTGAATGCTAATCGATTCTGTATGAACTTGATAAAAATACTGCATTTGTGAGTAATCTA # Right flank : AGGTACCCCATCAACGCCTACTCCCATCATACCTCAAACACCCAAATCTGTCGACCGACAACCAAATACTAAATTTCTGCTCCCGAACCTTACAACCCAACCTCCAAAAACGGTCTCAAATCTAGTGACACCGACGCTTAACAAAAATCTGTCGATGCCCCCTAATTTCCACGCTACCGACGGTCGACAGATTTTTATCCCCGCCTTTCCAAACACCACTTATCAACCATCTCCTTTTCCCCACAAAGAAAAACCCGAGGAAAATCCTCGGGCCTTCCGAACAACGAAATTACTCCGCTGTATATTTATTAACTAACGCTACAACTTCTTCTTCTGTAGCTTGTTGTAGTGCTTCGTCCGCTAGTTTCGCCATTTCTGTGCGATCTAGGCGTTTGATTAATGAACGTGATTTGAGAATGCTTGATGCGCTCATAGAGAACTCATCTAGACCCATTCCTAACAACAATGGTACAGCTGTTTGATCGCCGGCCATTTCGCCA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTTCACATTACTTAGATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 103580-102306 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPI010000004.1 Listeria booriae strain FSL L7-1698 NODE_4_length_400153_cov_24.679336, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 103579 30 100.0 34 .............................. ATTGTCTGGAAAGCTGGTCGTATATGGTCGCTGA 103515 30 100.0 37 .............................. TGCCTTATCGTTAGTAATAACCGTGTAGACTTAGACG 103448 30 100.0 35 .............................. ATGTTCGCTAACTTTCCAAACAGCATCGCGTTCTT 103383 30 100.0 37 .............................. TCATACATCACATCCACATACGTAAAATAATTTGTCA 103316 30 100.0 34 .............................. AAAGATTATTTGTTACTAATTGACAACATTTCAG 103252 30 100.0 36 .............................. TGCGTTTGCTTCTACTGCATCGAACGCCCATTGTTC 103186 30 100.0 34 .............................. AAATTATGTAAATGCTGTAATCCCCATGGATGCG 103122 30 100.0 36 .............................. ATGGATGCGGAAGTGTTGGTGCAATTATGTGATTCA 103056 30 100.0 34 .............................. AAATGATTGCTAAATTTATATCCAAATAACTTAC 102992 30 100.0 36 .............................. TTGCCTCAGTTGTAGACTTCGAACCATCCTGGATTC 102926 30 100.0 36 .............................. GACGATAGGCGGTTCGTATAGTGAACACGAGTATAC 102860 30 100.0 37 .............................. GAATTTGATTCTTCTGAAACTGAATCAAATAACGATA 102793 30 100.0 36 .............................. AGTAAACACGTTCGTATCAAGAAAGTAAGCCGCTCC 102727 30 100.0 35 .............................. ATGCACATTTGAAAAGTCATATGCAAAATACTCTT 102662 30 100.0 36 .............................. AATGTTATGGCTATCTATCTATCCCAAGGTACTAGT 102596 30 100.0 35 .............................. CACAGAGACGGAGTTCTAGATATCTATCAAGCAGA 102531 30 100.0 36 .............................. TTAGGCTTTACAGTAACAAGTGCAGAAGACGACTTT 102465 30 100.0 36 .............................. GTTATTGAGCAAGATTCCTTAACAGGAAAAAATACA 102399 30 100.0 34 .............................. ATCTTTCCTTAGTTAGGATCGTTGCTGCCGTTCT 102335 30 80.0 0 .......C.C.....C.A.....CA..... | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 99.0 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTGATTTACGATATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACACCAGCACTTCTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGGTGGCTGGAAAAGGAATTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTATGCATTGGTACTAAAGGGTTTAAACCTATTTTTGGAGTTTGGATTGTAAGGTTAGAGAGCGGGAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : CAATCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTTCGTAGCTAGTAAACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCGCGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCGGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGACCGATATGTTGGGGTGTATTCATCAGGCAAATGGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAAGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 190404-191095 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPI010000004.1 Listeria booriae strain FSL L7-1698 NODE_4_length_400153_cov_24.679336, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 190404 35 100.0 31 ................................... TTGTTGGAAGGCGTCGACAATGAAAGCGACG 190470 35 100.0 31 ................................... TATGACGCAAAACAGGCTATCTGGTCGCCGT 190536 35 100.0 31 ................................... TCTATTCACTTAGATTCTTTCAGTAAAGATT 190602 35 97.1 30 ................................C.. TACAATGTCATCCGCAGCAATAAACATCGC 190667 35 100.0 30 ................................... CTATAGCGCAAAAAGAGGCTGCCGCTGCTA 190732 35 100.0 31 ................................... CCGTTGACAAAATTAGATGTGGCAACGGCTA 190798 35 100.0 30 ................................... CAGCAATTACAGCTAAAGGTAGTCAAGCTA 190863 35 100.0 31 ................................... CCGATTTTAGACGAAATGGATTTAGCGGTGT 190929 35 100.0 31 ................................... CATAGTATTGAGGTGAGTTACATGAGCGAAG 190995 35 100.0 31 ................................... CATTAGCTTTTCTGAAGGAGTACAAGCTTAC 191061 35 88.6 0 ...........................T.T...TA | ========== ====== ====== ====== =================================== =============================== ================== 11 35 98.7 31 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAAT # Left flank : ACTGTACAAATATCCCCATATCGAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATGATTTCTTCGCCTTGAAGTGTGATAGGTAACGCCTTGCTACCATATTTCTTCAATAAACGAATAACCTCGTCATTTTTGAGAAACGGTTCTAGCGAATCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATGGCTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAAAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCTAAACTAAAACAGAACACACCACTGTTATAGCAAGAAAATACTGCGTCATTTACTACTGATTGGATGAGCATCCTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : ACTTTATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAACGCCTTCACTATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTGTCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATCACCAATCTATGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGGTCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATGTTTTGGTGATAAATAATTTAAATGTGCTATATAGTTCCTTCCATTTTTCTCAGAAACAAATAGCCCTGCCTTGTTCATGAAAATATCCAGCTTTTCAATATAATCTGGCCTGTTTTTTCTGGTAGTATTAATCCAGCTATCTACTCTTTCGGTATGTCCAGAACTCTTTAAATATT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 194537-194901 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPI010000004.1 Listeria booriae strain FSL L7-1698 NODE_4_length_400153_cov_24.679336, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 194537 35 100.0 31 ................................... GAAGCTTCTTCGCTAGCTGTTCCCGAGTTAT 194603 35 100.0 30 ................................... GAAGAGTTAGACAGCGAAATTTCAGAGGCT 194668 35 100.0 31 ................................... GACAAATACAACGATGAATCTTTTTCTTTCT 194734 35 100.0 31 ................................... GAAATGCGCCAAAACAAAGATAGTTACTTTG 194800 35 100.0 31 ................................... CGTCGGTGACGTTCCCGTAAATGTCCGTGTT 194866 35 88.6 0 ..........................TG.A..C.. | A [194895] ========== ====== ====== ====== =================================== =============================== ================== 6 35 98.1 31 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAAT # Left flank : GTAATACCGCTGACATTAATTCTGTTATTTCTTTATTGATTGCTTTGTTGATTGCTATTTTACGTTTATCTTTTTCTTTTTTGTTGGGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACCTTCATACGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATCCATTGGCAATTATCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : TATCTATTTTACTTTCAACAGTTTAACTATACCAAATTATTAGTAACTCTGCATCTTCGCGTAATCACACGTACTAAGTAAATGTATTTAGCTATAATTATGGCTTTTATAATACGAAACGTATTCATCAATCTTTAGGATACTTAACACCAAATGATTTTGAAGGAAAAGCGAATTAAATTCTATTTATTTTTGTCCAAGATATTGACACCACATCAATATCGCCAATCGTTCACTTTACTCATCTAATCATATCTAAAAAGGATAGGAAGTCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGCGTCATCCCAATAATAGATACCTTCAAATTCTCCCTCGCAAATCATTACAATCATTCCTTGCATGAGATCATCGCCAATAATTATTGAACCTTCCATCATATCTTCTTTTAGTTTTTCCATCCACGTCTCTATATTAGAGGCACTTTCCCCAGTATTCACACCATATAACACA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 49615-49252 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPI010000008.1 Listeria booriae strain FSL L7-1698 NODE_8_length_115692_cov_21.693284, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 49614 30 100.0 36 .............................. TCACTCACTCGTTCAAAAAAGTAAGTTACAGGCGCC 49548 30 100.0 37 .............................. TGTCTTGTTGATGTGTCTGGCTTGATTTCACGGTCTC 49481 30 100.0 35 .............................. GAAATACGGATGCTCTGCAATGCTTTTTCTACTAG 49416 30 100.0 39 .............................. ACTAGTGACAGTATTGCTAGCACTATCATCCATAGTGGT 49347 30 100.0 36 .............................. TCCGCTCGGATTAACGTATAATGTTTCTCTTTCTTC 49281 30 83.3 0 .......................CAC..TC | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 97.2 37 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GATGCTGAGCGCAACATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTTGCCGGCACAACCAAGTCAGTGTTTGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAATGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTCGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTATTTTTGCTTAGGGGGAGAAGGGGTTAGGATGGTTTTCGAGGAGGTGAAAAAAATAAGTAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTGAGAGGGTACCT # Right flank : CCCAAATAAGGAGAGACACTAAATGACTATGAAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACCTACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACACATTTGAAGGAATACTCATCGCGGTCATACACCGGAAAAATGATACCGAAAATAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATTCGAAAAAATACATTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTGACAAATACAACGTTATAAAAGCTCACCTTCTCATAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATATCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAACC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 341580-344831 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARPI010000005.1 Listeria booriae strain FSL L7-1698 NODE_5_length_360135_cov_30.484847, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================== ================== 341580 36 100.0 30 .................................... AACAGCATTGCCAGCGCTGTTAAAAAAGCG 341646 36 100.0 30 .................................... ATTATACTGCCTATACATTCGCCGCTACAT 341712 36 100.0 30 .................................... CTAGCGCCTTGACAATGAACTTTGTGCCTG 341778 36 100.0 30 .................................... CCGCGATTGTGGTCGTGACACAAGCCGAGG 341844 36 100.0 30 .................................... AAAATATGTAGCCCGTCGCTGTATATTAGT 341910 36 100.0 30 .................................... CATGAACATGGAGATCATACAGCTGGTGTT 341976 36 100.0 30 .................................... TTACAAGAGAAAATAGTGGCATCCAGTTCA 342042 36 100.0 30 .................................... ACATTTGTTGCAAAAATGGCAAATTACTAG 342108 36 100.0 30 .................................... TCGTCGGGGCTGTAAAAACGACAGCAGAGT 342174 36 100.0 30 .................................... CGTTTAGGTATATCACGTATCCGCGCATCT 342240 36 100.0 30 .................................... GTATCAAGTTCAATCCCGCTTTCCGTTAGT 342306 36 100.0 30 .................................... TCATATCCATGTTAGGAATCGCAGAAACAA 342372 36 100.0 30 .................................... CCGTTGAGTTCATTAACTGCATCTGTTTAT 342438 36 100.0 30 .................................... GTAATTGCAGAAGATTCTAATATTTTTTCT 342504 36 100.0 30 .................................... CAGTTTTGGGAACTTGATTTAATACGCTAT 342570 36 100.0 30 .................................... TGGAAGCGGCAGAAGTTCTTGGTGAGGTTG 342636 36 100.0 30 .................................... AACTAGAAGTGATAGTATTAGTGCACATAT 342702 36 100.0 30 .................................... TAACAGGTGATAATAGTTATTTATTAACTA 342768 36 100.0 30 .................................... ATCAAAAAGGTATTAGTGGCGCTAAAATGT 342834 36 100.0 30 .................................... GGGGACTTGCTTTTGCTATGTATGGTGAAG 342900 36 100.0 30 .................................... CAACTTCAATGAACATTTGGGGTGCACACA 342966 36 100.0 30 .................................... CGGTTGAAGGTATGAGAACAACCTTCAAAG 343032 36 100.0 30 .................................... CGAATCAAACAAAATTATTATAGGAGGTAT 343098 36 100.0 30 .................................... GAATGGCTCCGCCAGTATTGCGAGGCTTGA 343164 36 100.0 30 .................................... CTTCAATTTCAATACGGAGATAATCACTGT 343230 36 100.0 31 .................................... CTGTGTTGTAATTCCAAGTGTCAGGGACGTA 343297 36 100.0 30 .................................... ATGAACTCTGGAAACAAGTCAGAATGATTG 343363 36 100.0 30 .................................... TGTCCGCGTGCCCTAGCCTTGCTGATATCG 343429 36 100.0 30 .................................... AACTCGTAGCGAATATTGTATTTGATGATT 343495 36 100.0 30 .................................... CGTTGTGCATTTTCACAGGAATATCTAGTG 343561 36 100.0 30 .................................... GAAGAAGTGAAAAGCGTTATTTATTCTCGC 343627 36 100.0 30 .................................... GGAGTGTTTGTTTATGAAAGGAAGTCTTAT 343693 36 100.0 29 .................................... ACAAAGTAAAAGGACTGCCAAAGCATCCA 343758 36 100.0 30 .................................... AATCCAAGTGCACCTAGCACAATCAACAGT 343824 36 100.0 30 .................................... GCAGTCATAGGAGCAGGTCCTTTCTACTTT 343890 36 100.0 30 .................................... CCACGATGGATAAACGGAGCGTGTTCTTAT 343956 36 100.0 30 .................................... AAAACTGGGGCAATTAACGCTTGGTCGGCT 344022 36 97.2 30 .........G.......................... TATTGGCGCCCTAAGCTTCACGTGTTGCAT 344088 36 100.0 30 .................................... AAGCGCCCTCCCTCTACTATATAGCCACTT 344154 36 100.0 29 .................................... CAGTCAAAGAAATAGCGCAGCAGCATACA 344219 36 100.0 30 .................................... AGTGCTTCGCTCCGAATCCTACCTTCATAC 344285 36 100.0 30 .................................... TAAAAGCGCCATCGGAAATTGAAGCAGCAT 344351 36 100.0 30 .................................... CAAGCTTCTGCGCGAACGCTAGACAGGCAA 344417 36 97.2 30 .....A.............................. TCACTTCAGTATCTACTTTGGTGTTATTGC 344483 36 100.0 78 .................................... TTACAGATGTGATTACTTTATCCATCACATATTTTGGTATTAGGAAACTCGTATGAGTTCCCAAACATCACGGGTACG 344597 36 100.0 30 .................................... ATACTTTCTTTTCTCCCCAACTTCGATAAA 344663 36 100.0 30 .................................... ACCCCAGCTTACGTGCACATCTTGTCGCGA 344729 36 100.0 30 .................................... AATGTTTTTGCATTATCTTTTGCTTCTAGT 344795 36 77.8 0 .......................AAA..CC...CCA | G [344822] ========== ====== ====== ====== ==================================== ============================================================================== ================== 49 36 99.4 31 ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Left flank : ATATTATAAAACTAATATTGGGTATGAGTATAACAAAGCCAACCCTTGTGTTTGTGGAGGAATTTAGGTCTGGTCTGAATGACATAGAATGTGCAAATGCAGAAGGAATGTTACAGGAAATGGCTAGAAGAGGTATGCATGTTATTGTATTGGACGATAATTTGGTAGGTGCCTCTGTAAATTACTATTACCAAGATTTGATTGTAAATAAATTAGAAATATGGTGTGTTGAGAAGGTTATACTGGAATCAACCCCTATCTTGAGTAGCTCTGAAGACTTTCTGCAAGCGATAAATTGGTCTATAGAGGCTGTGGATAAGTCCGAGGGGAAAGTAGTGGAATTGGAGCTGCAGTCTGTGGATAACTTATGTATTTTTACATTAATCTATTTAATTTTCACATTTTTAAAATGGCCACTAATTGTTAATTTTAGAGGGGTTAGGAGTGATTTGATAGAATATCTTGCAGAGATTGTGAGTGGTGAGGTATAATTAGGAGGC # Right flank : ATTGGCTAAAGAGCAACATAAGAATTTCATAATGTGTTGCAGGTAATTGCCACAAATGTAAAGGCATATGTTAAACTATTTATTAAAACAAGCAACAGTCGGAGGCGTATATATGCTTTTTTTAGACAAAACAATCGAACTGAACGATACAGAAATGACGATTTACCACTATGTAGTCGGTAATTTAGACACGGTCATTTACATGCGGATTCGGGATTTAGCCGATGCCACCCATGTTAGCACAACGACAATTTTACGATTTTGTAGGAAGTTTGGGTGTAACGGTTTTTCCGAGTTTCGCGTGAAGTTGCAAATGTATGCGCAGAATCGGACGAAAATCAGTGTGGATATGTCGGATGAGACAACGTATATTGATTTTCTGAAACGCACAGCTCAGCCTGAATTCAAGGCGAATATTGCTCAGTCTGCGAAAATTTTACGCGATGCGGAGTTGGTTTTATTTGTTGGCATCGGGGCGTCTGGAATTATCGCTGAATATG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //