Array 1 42-472 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVB010000011.1 Listeria innocua strain FSL L7-0789 NODE_11_length_5685_cov_24.309201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 42 36 100.0 30 .................................... TCTGAATAAATTAAAACCTGCTGATTATAA 108 36 100.0 30 .................................... ACTAACGTATACATCTTCGTTATACTGACC 174 36 100.0 30 .................................... CTTAGAAAAGCGTAAAGTTATCTGCAATGA 240 36 100.0 30 .................................... CACGTATAATCCCAACATCACGGTTGAAAA 306 36 100.0 30 .................................... AACGATTTAAAGCTAAAAGAAGTGATTTGA 372 36 100.0 30 .................................... AAAATAGAAAATATTTGTAATAGTGGTGTA 438 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : GGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAGG # Right flank : CACATCTCTTAATCTACTCCAGCTAGAAAAAGTTACACCATTATGAAAGAGAGGACCCGACACATGACACAATACCACTACCTCGCCTCAAAAGCAGCACTAAGAACCACTACATTCGAAAATAAGACAAATTTTATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAAATTTCCTACTCCAAACATTTTAACCCAACTTGCAATTTCCAAGTCGCTATAAGTGAAGGGGAATTACCGTTAAAAGGCGAAGAGCAAAATAATGAGTATGAATCTAATAGTTTGAAAATACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCTATAGAAGATTTAACGCCAGAAAAGTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGACTTTTACATATATCACTTAAAATAAAAAGGAGCCTCCATTCATGAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 343907-343685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVB010000002.1 Listeria innocua strain FSL L7-0789 NODE_2_length_633813_cov_20.575710, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 343906 29 100.0 36 ............................. CAGATTGGATGATTTCCAGCGGTACTGGTAAAATGC 343841 29 100.0 33 ............................. AGCAGAAAAAACGTGCTCACACCATCTATCAAG 343779 29 100.0 38 ............................. TTTATTGCAAATAAAGGTATTGATTGAGCTATAACTGA 343712 28 79.3 0 ............C..CA......A-...G | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 94.8 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : ACGTGCCACAACCTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGTTCATTGCATCCGTTATTTTAAGATATAAGCAGAAAACAGCAACTAGTAGAGTTGCTGTTTTTTTGTTTTTAGTAAACTATCGACCAGCAGTAGCGTAAAAACACCCGAGACCGACAGAAAGTGTGAATGCCTGGAGAAAGCGGAGTTTGGAGATATTTGCTTTGAAAAAGTATGCTAGCAAAAGTGGATTTTATCTGATTTGGAACAGGTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGCGCACGG # Right flank : CCCAATATATAATCTTTGCTCACATTTAAAAATCACATTTTCAATCTATATCCATTAAAATATTGCTTTTACCAGCTATCTCAAAAACTCAAACATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGAAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAAAAAGTAAATATTTCGGAACCGTGGTATTTAAGTGATGATAAATATGTCGCGGTTGAAAACTATATTGCACTTGAAAAAAATGAAGAATATACCTTGTTTCTAAACGAGGG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1867-2562 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASVB010000001.1 Listeria innocua strain FSL L7-0789 NODE_1_length_853878_cov_16.057126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1867 36 100.0 29 .................................... AATATAACATTGTGAATTGTTCACGTAAA 1932 36 100.0 30 .................................... AATTAGAAAGAACCAACCAGGAATACGAGT 1998 36 100.0 30 .................................... GTCTACATAAAAACCTTTTTCGTCTATTAA 2064 36 100.0 31 .................................... TTAAAAAAACAAAGTGAGTTATTGTTGGAAA 2131 36 100.0 30 .................................... TAGCGTTGGTAGTATTGAGTGTAGGAACTT 2197 36 100.0 30 .................................... ATTATTTATCACACTGTAATCACTCTGGCC 2263 36 100.0 30 .................................... CTACTTGGGCGCACTGACAATAAAATGGAC 2329 36 100.0 30 .................................... CCATCTATTTTTATCTCTTTGATGGCTTTA 2395 36 97.2 30 ............A....................... AGCCTCTGTAGCAGGAAGAAAGGTGCTGTT 2461 36 97.2 30 ............A....................... CTTCTTTATAAGCGATAGTTGCACCACGAA 2527 36 91.7 0 ............A.............T.G....... | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 98.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTTATTGAATTATTCAAAGCTTTAGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTGAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGCAGAAGGGTTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTTGAAAAAGGAATGTAGAGCTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG # Right flank : CCAGATGCAAGTTTATGTGATTTATTAAAAAGGAACTAGTTAAGAAATTGAAATATAAAATGATACAGGATTCACGAGGTAATTCAAAAGAAGAAGCTGTTTTATGACTAGTGCCCAGTTTTTGGATGTATTTCTCTGCTCATTTCGCGTGCAGATGCTTTACGCGTAGATAAGCTATTTTTAGTACGGTATTTTCCTGTGGGAAGGTCTCTTTCTTCGTGGCAATCATAGAAGTCAGCAGTTGTTCGATTTGATAGAGGATTAAAGAGTATCTTGCTTCGTTTGCAGCATGACTAAGTGTTGTTTTTTGCCCTTCTGAATAAAGTGTGTCGCGATAATCTGACTGGAAACGACGATTTTCAATTCATTAAGATAGTGTTGCGCGATTGCTTTTCATTCAAAATTATATTTGTCTACGGTTTGTTTTGCGGTAATATCGTAGTCATAAAATCTTCGTAGTAGTTGTAATTGTGTCTATTTCACAGCGATAATCAGAAGTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : GTTTTAGAGCTAAGTTATTTTGAATGCTAACAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //