Array 1 277355-278116 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGAJ010000001.1 Streptococcus agalactiae strain SU97 scaffold_0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 277355 36 100.0 30 .................................... ACTTCCATGTTTCAAAATTTTTGGAGGCCA 277421 36 100.0 30 .................................... AAATAAACTAACCTTTAAATTGCAAAACGA 277487 36 100.0 30 .................................... AATTGACTTAAAAGGTCGCTCGTGTGTAGC 277553 36 100.0 30 .................................... TCCGACCATGTCAGTCCAACGGTATTTTGT 277619 36 100.0 30 .................................... TAATCCTGAAAAAATAAGTGGAATGTCTCT 277685 36 100.0 30 .................................... AGTAACTATTAATGATGAGCCTTACTTTGT 277751 36 100.0 30 .................................... TTTCCCGCTGTCATGGCATAAAAACAGCGT 277817 36 100.0 30 .................................... TCGAACTCTTGCTTAATAAGCCCGTCACGC 277883 36 100.0 30 .................................... TCTATGGTTAACCAATTAGTCATCACTTAG 277949 36 100.0 30 .................................... TGCTGGAAACAGGGTTTATAACAAAGTACG 278015 36 100.0 30 .................................... TTATCAAATTCTTGTGAAACAAATTGATAA 278081 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 31 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : TTATCAAATTCTTGTGAAACAAATTGATAAGTTTTAGAGTAAGTGTCTAGAGTTTCGGGAAAAACAAAATGAAATATCCTTATAGCTTAAGAGAACGAGAAAATCGTTCTCTTTTTTCGTTGGTCAAAACTAGTGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 101-663 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGAJ010000023.1 Streptococcus agalactiae strain SU97 scaffold_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 101 36 100.0 30 .................................... ATCACAATACAAGGTCTTTTTATCTTGTCT 167 36 100.0 29 .................................... AAAGTTTTTGAGTTTAAGACAATAGCTTC 232 36 100.0 30 .................................... TTTAGGTCGTTGGCGTTTGTTATTGATTAA 298 36 100.0 30 .................................... TGGTTGATTTGTATTAGAACCTGGGGTCGT 364 36 100.0 30 .................................... ACCAGCAGTTGAACAAACAGCGCCAGCAGT 430 36 100.0 30 .................................... AAATGATTATCTATCACATAAGGTTATTAA 496 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 562 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 628 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : GAGAAAACCTTTGTTTCAGTCTTTTTTGGAATAAAAGAACCTAGAGTTTTCTTAGGTTATAAGGGTTAGTTGGACTTTCCCAGAAATATAGACACATACAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //