Array 1 191040-190471 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCN01000001.1 Photorhabdus sp. HUG-39 HU2_39_scf0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 191039 28 100.0 32 ............................ GAACCGCAGCCGCCTCTGCTTTGATCTCCCCA 190979 28 100.0 33 ............................ CTGCCGGCACTGCTGCTGACGGGGTGCGCCATG 190918 28 100.0 32 ............................ TTTGGCACCACCGCCAAGTCCAAAGAAGCGGA 190858 28 100.0 32 ............................ CAATCATTAAGCAACACAGCTAATCACCAAGG 190798 28 100.0 32 ............................ CGATCCTGTAGGCCCAGAAAGAATGATCACGC 190738 28 100.0 32 ............................ GGCGGCATGGTATGTCGTAAGATAGTTCTGTC 190678 28 100.0 32 ............................ TTACGATATATGTTTGTCATATAACTTTCAAC 190618 28 100.0 32 ............................ AGCACGAAAATTTCATTCTCTGCTGCATAGAC 190558 28 100.0 32 ............................ CGGATACGTGTAGGCCGTGGATACCAATTTTT 190498 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGATGATGTACGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCGGATAATCATCGTAGTGGGAAGTTGTTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGAGTTTGGCAAGATCACGTATTAACCGCGTTGACAGATGAAAAATGGAGTGGAAAGAGTTGATTATTACGCTGTACTGTCACCAAATAAAGTAAAGCAAATTGGTAATGATGAATTAAATCACTGTTGAAAATCTGCCTTCTCCACCCCTTATTTTTGACCCTTTTTTGAGAGTGGATTTTAATCTATTGATTTTTAATGGGATATTATTTCTCTTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAATTGTCAGTAGCTTAAAGTTAATATGTAACA # Right flank : TGAGTAAGCTTCAATGAATTGATTTATTTGACGCACTGACTTCGGTTGGTGCGTTTTTCGAAGTGGCTATTTGGGCTTTCTGTAGTAAGGCTAGTTGCAAGGTACCATCATTTAGGCCAAATACAATGTTACATTGGCAAATTATAAAAGTTAATGATTTCTAGTGTATGAGAATGAATTTATGCATACTCGCCGATTTTGTTAACAAAGTGAATGATTAACCATGGTAGATTCATATAATAAGTGCAATATCGTTCCTCTTAAAATCAACATGTCCGTATTACTTTAAATTATTAAATGGACATTTTGTTATTGATTATCATGAAAATAATTTGAATGGTTTCTTTAATTCGTATAAATAGGTATTATTCTGATTAGTATATTTAATAAATATTGAAGTTCTTTTTTATAATGATTTGATAAATCATAACTTTTATTTCATATTCACTGGATAATGTTGGTTTAATTAAAAACAGATAAATAAAGAGTGATTGAAAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 71318-71704 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCN01000024.1 Photorhabdus sp. HUG-39 HU2_39_scf0024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 71318 28 100.0 32 ............................ ATTAAAAGCGGCGTTCATGCCTACGCTGAACA 71378 28 100.0 32 ............................ TGATCCAGCCAGGAACTGTTGGGTTGAATTTC 71438 28 100.0 32 ............................ TATGTTCCGCAGCATTTTTCGCTTCATCTTCT 71498 28 100.0 32 ............................ GTCTATCCAATCTGTATTATTAAAATCCAGAC 71558 28 100.0 32 ............................ TATGCGGCAAAGGTTCATTACCTAAGTAAGGA 71618 28 100.0 32 ............................ ATGATGCTGAAGATATCTGCCGGGCAGCTGGT 71678 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTGCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CAGAGGAAGCAGGTCTGGATGTTGTTATGGATCGCTGCCCAAAAATTGAAATTCTAAGATTGGGACTCGAAAAATAATATTTGTCAGCTTGTAATTATTTGGTTTCTAATTAGTGGATGAAGGGCGCCAGGCACCAATATCTAATGCAAACTTAAGGAGTTGGGTGAGAAGTGGTATCCGGGTTCCAAGTGTTCAAATAATGTTTGAGCTGGATATTAAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAGTTATTACAATATATTAAGGCAAGTTTAGTTGCTCTTATGGCTGCTAAATTTTGTCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCTCAGTTTTGACCCTTTTTTATCATCAAAAAATAACCTATTGATTTAAAATCAAAATAAAATATCTCCTGAAAAAAGGGTTTTTTCATTTTTTATCACTATATTCTTTAACTGTCAGCAACTTAAAGTTAATATGTAACA # Right flank : ACACGATAACTGCCTAGGTTGTTTGGTATAAATAGAGGATTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCGTCTTCCATCACAACGTGATACCAGGGAGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGCGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGGCGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCCGTACCCGTTGGTTGAAGTCTTTTTTTTGCTTTAATTGCGAGTGTGACTCCATCTATTTCAGGTTAGCTGTAGTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 114087-113161 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCN01000012.1 Photorhabdus sp. HUG-39 HU2_39_scf0012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 114086 28 100.0 32 ............................ ATATTCAGAGATAGTTATTCTTCCCCGCCCAT 114026 28 100.0 32 ............................ GCCAAGCGCCAAAAACAAAAGCCGCGCCCCAT 113966 28 100.0 32 ............................ GCCAAGCGCCAAAAACAAAAGCCGCGCCCCAT 113906 28 100.0 32 ............................ GCCTTGAGATACTGTAAATCTTTCATCTCTCC 113846 28 100.0 32 ............................ TGATGAGAAAGCACATTGAGAACGAAATGATA 113786 28 100.0 32 ............................ TTCGGTGGGCTTGGCAATGGCATCCAATGACT 113726 28 100.0 32 ............................ GTTAAATTCGTCGGGAATTTCTAGTTCACGAT 113666 28 100.0 31 ............................ CCGTGAAGGTTCATGAGGCCATCCATTTCCA 113607 28 100.0 32 ............................ TTCTCTTAGCATTTGTTTGCAGAGAGAACGAA 113547 28 100.0 32 ............................ TGTCAAAACTTGACATTCAAAAACGGATTTCA 113487 28 100.0 32 ............................ TGGCGCGTGCGGGGATAATCCTGGTGTTTCAG 113427 28 100.0 31 ............................ GCGAGGATATTGACGGTAGTAAAGTCTGGGA 113368 28 100.0 32 ............................ GCACTCAAGGCGTTGTTGAAGCTGTGTTGAAT 113308 28 100.0 32 ............................ TGAGGGAAGCAATACATTTTCGCGTCCTCGAT 113248 28 96.4 32 ...........C................ ATTGCCCTGAGAGGAAATGCCTTAACATAATG 113188 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGCGCTGAATGACTTACAAGCATTACCGTGGTTAAAAGGGCTCAGGGATTATACTGAGGTGATTGATATCCAGCCAATTCCCCAAGAAACTAAGTACCGCTGTGTCAGCCGAGTGCAGGTTAAAAGCAGTGCGGAACGACTTCGTCGTCGTGCTATTAAAAAGGGATGGTTAACGGGGGAACAAGCTCGGCAGCGTATTCCTATCAGCAAAGAACAACGTACTCATTTACCGTTCTTGTTTCTCAAAAGTTTGTCATCAGGTCAAAGTTTTCTGTTGTTTGTCAAACAAGGGCCAATACAAGACAAACCGACGTCAGGAGCTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : TCGATTGAGTGCGCTAAAAAAGCAACCTATTTTCTTCTCAATATGCATCAATTGTTATGCTTTTGTGCATATTCTCCACTATTAACCCATTGATGGTCTTTTTCCCAGGTAAATAGCCACTTGCGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAAGGGTTGCCACTGGGTGGTAGCCTTTGGGGACCATGACCACATCTTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACCCGTTGCATGCAGAATCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGCATTGTCGGTATCGTGTTTATGGCTAGGGTAGGAACTGGTACAGCCTTCGTCGGTAAAGACTTCAACCACCAACAAGCTATCAGCAGGTTTGTTATCCGGTAGAATGTTGTGAACATAGCGTCGGTTGTAGCCATTGCCACGTTGTTCTGCATCAATATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 124086-123223 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCN01000012.1 Photorhabdus sp. HUG-39 HU2_39_scf0012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 124085 28 100.0 32 ............................ CGGACAAGTAATAGAGAAAATTGAATCAATGC 124025 28 100.0 32 ............................ CTCGGCTATTTTCATTCGAGACGCTATTCAGG 123965 28 100.0 32 ............................ GGAAAGATAACACGGCAAGACGGGCAGCAAAT 123905 28 100.0 32 ............................ ACCTCAAACAGATTTAAACAGTTCGTCATGGC 123845 28 100.0 32 ............................ ACAATTCTGCTGTACGAATTGCTCCACCCGCC 123785 28 100.0 32 ............................ TGCGGCACCGGAGATAAATAATGAATGATTAT 123725 28 100.0 32 ............................ TTGGGAGCGCGGAACTTACGCATAAATCCCGC 123665 28 100.0 32 ............................ TTGTGCTCCAAAAATGCCATAACACGGCCAAG 123605 28 100.0 32 ............................ TTCTCTTAGCATTTGTTTGCAGAGAGAACGAA 123545 28 100.0 32 ............................ GAATGAATCTTTTACCGGCTTTCCGTAAGGAT 123485 28 100.0 32 ............................ ATAGTGCGCTAAATCACTTCCTTTGGTTATTG 123425 28 96.4 32 ...........C................ ATTAGCTCGGGCCAAGGCTTTAAACGAGCTAC 123365 28 96.4 32 ...........C................ CAGCCGCGCTCAATTAATGCATCACCGGGTTT 123305 28 92.9 27 ....................T...A... TAGAAAGTCTTCCTCTTCTCCTATCGA 123250 28 67.9 0 ...TG.....AC.T..AT........GT | ========== ====== ====== ====== ============================ ================================ ================== 15 28 96.9 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGCTCGCGCCCTGGCGTATTCTGGAGGTGAATTATTATAGGATTATTAGCTAATAAAATAGATGAATGAAAATAAAATAATTCATGAGTAGATGAGTTTGATTGAATTGGAGACTTGGTAAATTGGGTAACACTGAAACTTTCAATATTTAAATGCATGGTGAAATTAGTGCAACTGTTGGCGTATTGAATGATGTCATTATTGAAAAAGGCTACGAGATAACAGGTGCTAGTTTTTGTTGATGACAGAGTTCAGTGAATGGTTCCATCATAATTGAACATTTTACAGGCAGTAATTCTCACTTACTGTATAGATCTTAGGACATACGACTTAAGTATGTGATGGTATTTTTGTTGCTACCTTATTTTTACCCTTTTTTTGAGGTGAGTTGTAATTGATTGATTTTATGTATAAATTAATTATCTCTTATAAAAAGGGTTTTTCATTTTTTAATAGTTATGCTATTTAAAAATCAACAAGTTAAAGTTAATATGTAACA # Right flank : ATAATTATTCCTGTTTAGGGAAGGTGCTATGCTGTTAATTAGTAAATAATTGTAAATTTTTTTAATTTACCTTTGTGATGTTTTACTTGTGTGAAATTTATGCATAATATTTGCCATAAGTGAAATTAATTAGGTAATTCTACATTATGGATAACAACTTTTCTCCGAGTGACCTTAAAACTATTTTGCATTCCAAACGCTCGAATATTTATTACCTGCAATATTGTCGAGTATTAGTGAATGGTGGCCGTGTTGAGTATGTCACTGATGAAGGAAAGCAATCCCTGTATTGGAATATCCCAATTGCAAATACCACCGTTATTATGTTGGGAACGGGTACTTCTATTACTCAGGCAGCAATGCGTGAATTTGCTAAGGCGGGTGTTTTAATCGGTTTTTGTGGAGGTGGAGGTACACCGCTATTTGCGGCTAATGAAGTTGAAGTTGATATATCTTGGCTGACACCGCAAAGCGAATATCGCCCTACGGAGTATTTACAA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5352-5084 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCN01000028.1 Photorhabdus sp. HUG-39 HU2_39_scf0028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5351 28 100.0 32 ............................ TGAAAGAGTCAGGGATGATACGCAGCAGGTAC 5291 28 100.0 32 ............................ AGTAGGTTGTTGTATTTCTCAATCTGGCTTGA 5231 28 100.0 32 ............................ TAGACCCTGATGCAATGATTGTTGGTGAAATT 5171 28 100.0 32 ............................ TTGTTCATAACGCCAAGACAAACCAAATCGAG 5111 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAAGCATCAACCATATCATCTATCGTGGCTGATTTTATCGCGACACGATCTGGCAATGATGTTCTGGATGATGGAAATATAGCCAAACTCACCACTCAATTAAATAAAGCACTAGAGCAAAAAATTACAACAGACATTCCCAGTGCTTCATTAACACAAAAGGGCGTTGTTCGGCTTACAAATGTGATTGGCGATAGCAACACATAGGCGGTTACACAAAAGCTTGTTCAGGAAGTCATAAATTCATTACGTGAATATACCTGCGAGGAGATAGATAACCGGATTAAAACAGTCAATGAAATTCCTGTTGGTTCTCCTATTCCGTGGCCGTTACCTCATCCACCGTTCGGTTATTTCACTTGTAATTTTTACCCTTTTTTAACGACCAACTATAATTCATTGATTTTTAATGAAATTTAACCTGTCTCATAAAAAAGGGTTTTTTTGCTTTTGATAAATATATTCTTTGATAGTCAGTGAGTTGGAGTTAATATGTAACA # Right flank : TAGAAAGTCTAATGGAGATGAAGCCTTTGTTGATGTTCCGGCAAGTGTTGCAGTTAATGTATTGTTGTTAAATACAATGCTGCAAACAAAAACAAATAATGCAGAGCTAGCGAGAAAAATAGGAACGTTTCCGCAAGATGTTCAACGTATAGTCTCATTGCGTCACAACACGAAGATTGACACGGTAGAAAGCGCGTTAAATGTTCTTGGTAAAAGATTGAATCTCGCTATTAGTTAACAACTTATTACACACGTTCAAAGGCTGCGCATTGCGTGGCCTTTTTTATTGATAGATAAAATTTTCTTTTCCATCGGTTCTACGAATAGAGAGAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGCATGTTTTCAATTCTAAAATATTTAATTACTTATTGCCGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACCGGCGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 36094-35827 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSCN01000028.1 Photorhabdus sp. HUG-39 HU2_39_scf0028, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36093 28 100.0 32 ............................ CCTGATCGCCAGTCACTCCCGTGTTTTTACAT 36033 28 100.0 31 ............................ ATTGCGGCTAAGTAAGAGAGCGATCACAAAC 35974 28 100.0 32 ............................ TGCTCATTACAACGAAACAATGCAGAAGCAAT 35914 28 100.0 32 ............................ TGGATAACTTGCATATAAACCACTGCTTGAAT 35854 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCCGGTGCGATAACAAATGGTTACCATCTGGCAACAAAAGGGGCTTGTTATGCTAGTGCAACTTTTGGCGTGGCTACAGATGGTAATCCCAAATCGGTAGGTCATTTTACCCCGGATACTGTATACACTGCATACGGTTTTGGGTTCGATACGTCAAGGGTTGTTCCTGTCGCTTCGGAGAACCGCCCCCGCAACGTAGCATTTAATTACATAGTGAGAGCGGCGTAATGGCTGAACAAAAATACGCTTGATAGCCAGAATATAGAAGTACTCTAGGATATGGGAATTTTGCTTGTTGATGGACAAGCATGTTGGCTGTAAAGGGTAAAATGTAACTGAAAAAATGATATTTCCCCGGACCTAAATTTTACCCTTTTTTAACGACCAACTATAATTCATTGATTTTTAATGAAATTTAACCTGTCTCATAAAAAAGGTTTTTTTTGCTTTTGATAAATATATTCTTTGATAGTCAGTGAGTTGGAGTTAATATGTAACA # Right flank : TGAAGATAGTGGTGCCAGGCGGGAGTGGACGACCCGCATTTGGGAAGGTCATCCCCCCTCATTTCATGAACAAAGGTCTTTATCTGAAGCTATACAGAGAGCATCAAGTAAACACGCAGCGACTACGCGGACATAAGTCATTTTGATTATCGGCATTCAGCGGTGTTTTATAACACCTGTCGTTGACTTAAATGGCCCCGCGTCTCCGGGACATGAATGTGAAGACGGAATACCCGAAAATAAATCATCGTATCCATCATCAATCATTGCATTTTCCCCGGACTTCGGCTCCCTATTTCAGGAACACCCCCTTCAATAACTTTCATGCCATTAAAAATAGTCCAAAAAAATATCCCGGACTATCGCATAGAATAGGACTTCCTCATTTCCAGCCGCATTATCCTATAAAAGCTATAATGAATAAGCGAGTTATTTCATAATATCATCAATATGACGCCACTTAATTAAATTTATTCTCATTCGCATAATCTGACTGATAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //