Array 1 527481-528572 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQYJ010000001.1 Listeria cossartiae strain UTK_C1-0005-E1 NODE_1_length_533976_cov_82.390385, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 527481 36 100.0 30 .................................... CGCTCCCCTTCGCTGAATACGTTTCTTTGC 527547 36 100.0 30 .................................... AAGTACTTTTTATAGAAAACTCCAAAATGG 527613 36 100.0 30 .................................... CAGCGATGCAGTGAGGAAGCTGAAAGGCGG 527679 36 100.0 30 .................................... CCACTCCGTTTCCTTTATGCTGTTACTGTA 527745 36 100.0 30 .................................... TAATCCACCACGATCTATGACAAATAAGCG 527811 36 100.0 30 .................................... AAATTGGAATACTTAAGGAATCGCAAGGGT 527877 36 100.0 30 .................................... AAAGAAAATCTTGAGAGTACGGTTACTATT 527943 36 100.0 30 .................................... AGTCAAACGGAGATCAGTTATACATTGCGA 528009 36 100.0 30 .................................... CTTTTAGATGCAGATGGTTTTATCACAGCA 528075 36 100.0 30 .................................... TAGGAAAGTTATTGCTTGACATTACCGTTA 528141 36 100.0 30 .................................... TTAATGTGTCTATTAGTTGTCATGTTGTAA 528207 36 100.0 30 .................................... TTGAGAATCCGATGGTTGTTGATGATCTTT 528273 36 100.0 31 .................................... CATGTGTATGTGTGGCGTGCACACCTGTAGA 528340 36 100.0 30 .................................... TTTTCTCCGTCCATTACAATCGTCGACAGC 528406 36 100.0 30 .................................... ATGTTTCTCTAACAAGTCCCTTCCACACCA 528472 36 97.2 29 ..................................C. ATCTGATGAAGATAACTACGCTGAAAAAA 528537 36 77.8 0 ......A......A......A..G....G...T.TA | ========== ====== ====== ====== ==================================== =============================== ================== 17 36 98.5 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGTTAACTGCGACAATTAGCGAGTTAATAGGTTACGAGCTATTGGAGCATGAACTAGATTTAGAAGAAGATGAAATCACGGTTATTGAATTATTTAAAGCTTTAGGAATAAAAATAGAAACTAAAAGTGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAGAAGTTGCTAGTTTTTATAAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTATATCAAGTGAAAGTTTTGTTTATTGAACCTAGAAAAACAGACGGCTTTTCGCAGGTTATTCTGGATTCGGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGACCGGACGTTCTTTGAAAATAAAATATAGTTTAATTAATTTATTAAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTTGGAGGATAAAAAATTCTACGAG # Right flank : AAGAAATAAAATCTTTCACATCAAAAGTTCTCGGTAGCTTTTAACAAGGACTATAAAAATTCAAAAAGGAGCTAAACCAACCACATGACACAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTGGCTTCCCCTTTCTTCTATATAAATGATCTAGATTTCTTAATCTTAAATTTCGAGGCAAACATCGACTGTGATACAAAAGATTTATTCTCCTATTCAATACACTTCAATCAAGCTTGCGAATTTCAAGTTGGTATAAGTGAAGGGGAATTACCATTAAAAGGCGAAGTGCAAAATAACAAATATGAATCTAAAAGTTTGAAAATATTATATGATTACATTATAAAAGCGAGTAAAGAAAGCGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAGAATCTTCCTTTAACAAATAAAACAGAACTATCCATAGAGAATTTAACTCCTGAGAGCTTGATTTTAAGCGATAGAGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 256742-257618 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQYJ010000004.1 Listeria cossartiae strain UTK_C1-0005-E1 NODE_4_length_399572_cov_74.067963, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 256742 29 96.6 37 ..........T.................. AAGCTAGTTATAACTCGGTCATCTGTGAATTGGAACG 256808 29 100.0 37 ............................. CAAAGAACAGGTGAAATACCAACACTACCTAAAGTTT 256874 29 100.0 37 ............................. GTTGTAACTAAATTAGGTATTAAAGGTAATGGATCAG 256940 29 100.0 36 ............................. AGCGCTACAAAGTCAGCAGCATTAGCAGTAAGTAGC 257005 29 100.0 35 ............................. GCGAAAGAATCGAAAAAATTAGGTGGAGACTTCGG 257069 29 100.0 37 ............................. GACAAACGTAGCATAGTGTCTGATTCTCGAATCCCTT 257135 29 96.6 35 ..............G.............. GAAATCGCCGGACACGTCCAGTTTGCGCGATTTGT 257199 29 96.6 34 ..............G.............. TCGATAGTACTATTTAACGCTGCCGCTGCACCGG 257262 29 93.1 36 ......A.......G.............. TTTATCGATTTAAGCGATTGTAATTGCGCTATTGCT 257327 29 96.6 36 ..............G.............. GCAATTACAGATATAAACGACACGAAAATCATTACT 257392 29 100.0 38 ............................. ATGCCAATAAACTCACCATATTTCTTGATGTGTTCACA 257459 29 96.6 36 ..............A.............. AGAGCAACCTGGTCTAAAGCAATAGGTGTCACTTCG 257524 29 96.6 37 ..............A.............. TTCGATGGCTATAACGCACGTTTGCATAAAGGCGAAA 257590 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 97.8 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : GCTACCACGTCAGCTGATATATTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGTTTACAAAATTCCAATATCAAAGAAGTAATCACATCCGACTCCATCGATCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATTTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAAGGGTTAATGAAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGCGTTTGGTTGTTTGTCGACCTTTGGTAGTGTGAAAAAGGCTGGGGATCGACAGAAAGGTGAGAATGGTTGGAGTGAGGGGAGTTTGGTGGTTTTTGGTTTTGAAAACCATGTAGAGAAGGATGGATTTTCATTGATTTTTAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCATTTCCAATGCCTATACAAAAAAGCCAACCAACAGGATTTAGGCTTATTTTTTATCCCCCCCGTTAACAATTCCGCAACAAACACATCAAAAACCCCCAATTTCCTCCGAACCTCCAACTACACCACACGCCCAACCTATGCTAAACTTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATCCTGGCAAGCTGCTCCTCTCCAAGCGGAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAATATCCCGAAAAACATGAAAGAAGTAGCAAATAATAGCAATAACATAGTCAAAGTAAAGCTTCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGATATTTCAGAACCATGGTACTT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGATACTTAGTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 272553-273227 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQYJ010000004.1 Listeria cossartiae strain UTK_C1-0005-E1 NODE_4_length_399572_cov_74.067963, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 272553 29 100.0 36 ............................. GACTCTGATTTTAAAGAGTACGTAGACGAGATAAAC 272618 29 96.6 37 .............T............... TTCACATGGTATTGATTATAGTAAAATTAATGAAAAG 272684 29 100.0 34 ............................. TAAACTTGCTTGCAATCACTATTATATCATTAGT 272747 29 100.0 34 ............................. TGTCTAAACTTACACAAATGAATAAACAAATATT 272810 29 100.0 36 ............................. GCTTGATACTGAACAAGTGTGATACTGTTGTCATAT 272875 29 100.0 34 ............................. AGTGTAGCGCGAATAATTTTCTTGTATTCTTCAT 272938 29 100.0 37 ............................. TACCCAGAATTAAATTTTTATGATCCGCTTGACTTTC 273004 29 100.0 37 ............................. CACGAATCAATTCGATTAACATGATACGGACGCCCCG 273070 29 100.0 35 ............................. ATATCCGCAGAGAGTTCTAACATGTGCGGATAATT 273134 29 100.0 35 ............................. GTGTACATCCAGTTAGTGGCTTGGTAGATATATCC 273198 29 82.8 0 ...............C.C....CA....C | C [273220] ========== ====== ====== ====== ============================= ===================================== ================== 11 29 98.1 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCGGCGCTTTTAGTTAAGTTAAGGATGGAGGTAGATAAGTATATTCGAGATGATCAAGATTCAGTGATTGTATTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGATCTTTAGTAGTGCGAAAAATATTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGTGTAAAATAGAGCGG # Right flank : CTTCCTCTCAACATCCAAATTCCAAAAATAAAAAAGACCTGGATCCCAATCCAAGTCTTTTCCCCTACCACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAACCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAATCCTGCACCTGCAAAAAACAACCCCCACACAAGCCCTGCCGCAAGAAACCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCTACGCCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGTTCGATCATCACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //