Array 1 184591-181941 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAGYR010000003.1 Klebsiella pneumoniae strain 5012STDY7312685, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 184590 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 184529 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 184468 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 184407 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 184345 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 184284 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 184223 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 184162 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 184101 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 184040 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 183979 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 183918 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 183857 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 183796 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 183735 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 183674 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 183613 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 183552 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 183491 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 183430 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 183369 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 183308 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 183247 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 183186 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 183125 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 183064 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 183003 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 182942 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 182881 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 182820 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 182759 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 182698 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 182637 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 182576 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 182515 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 182454 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 182393 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 182332 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 182271 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 182210 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 182149 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 182088 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 182027 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 181969 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1803-1408 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAGYR010000035.1 Klebsiella pneumoniae strain 5012STDY7312685, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1802 29 93.1 32 ............TG............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG 1741 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT CC [1735] 1678 29 100.0 32 ............................. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 1617 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 1557 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 1496 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 1435 28 86.2 0 ........T.A............-....A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 93.1 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGAAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //